Wall clock time and date at job start Mon Mar 30 2020 04:41:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09002 * 109.47076 * 2 1
4 4 C 1.53005 * 109.47233 * 239.99991 * 2 1 3
5 5 C 1.50695 * 109.47088 * 175.00020 * 4 2 1
6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2
7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2
8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4
10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5
11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5
12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5
13 13 O 1.42899 * 109.47014 * 120.00450 * 2 1 3
14 14 C 1.42907 * 113.99662 * 269.99627 * 13 2 1
15 15 C 1.53005 * 109.46878 * 179.97438 * 14 13 2
16 16 C 1.53001 * 109.46559 * 180.02562 * 15 14 13
17 17 H 1.08998 * 109.63240 * 304.99454 * 16 15 14
18 18 C 1.53250 * 109.62496 * 184.60634 * 16 15 14
19 19 N 1.46468 * 109.85790 * 178.28992 * 18 16 15
20 20 C 1.46468 * 112.55695 * 72.65994 * 19 18 16
21 21 C 1.53249 * 109.85928 * 287.34160 * 20 19 18
22 22 S 1.81895 * 109.63152 * 65.39636 * 16 15 14
23 23 H 1.09000 * 109.47793 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.47028 * 299.99847 * 1 2 3
25 25 H 1.09000 * 109.47484 * 59.99824 * 1 2 3
26 26 H 1.09002 * 109.46935 * 54.99986 * 4 2 1
27 27 H 1.08998 * 109.47061 * 295.00779 * 4 2 1
28 28 H 0.97006 * 119.99995 * 359.97438 * 8 7 5
29 29 H 1.09000 * 109.47190 * 299.99954 * 14 13 2
30 30 H 1.08994 * 109.46731 * 60.00084 * 14 13 2
31 31 H 1.08995 * 109.47269 * 300.00439 * 15 14 13
32 32 H 1.09000 * 109.46700 * 60.00428 * 15 14 13
33 33 H 1.08999 * 109.40980 * 298.41182 * 18 16 15
34 34 H 1.09002 * 109.41069 * 58.25647 * 18 16 15
35 35 H 1.00896 * 111.00160 * 307.55148 * 19 18 16
36 36 H 1.09001 * 109.40932 * 47.46054 * 20 19 18
37 37 H 1.09003 * 109.41043 * 167.21915 * 20 19 18
38 38 H 1.09000 * 109.62797 * 181.70539 * 21 20 19
39 39 H 1.08995 * 109.63093 * 302.09767 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 3.5418 -0.6149 -1.3127
6 1 4.0790 -0.0862 -0.5392
7 6 4.2302 -1.1927 -2.3584
8 7 3.5762 -1.8361 -3.3006
9 14 6.0920 -1.0615 -2.4367
10 1 6.6837 -1.6885 -1.2276
11 1 6.4854 0.3692 -2.4952
12 1 6.5870 -1.7614 -3.6493
13 8 2.0062 -0.6737 1.1667
14 6 2.2000 0.1829 2.2941
15 6 2.7078 -0.6410 3.4792
16 6 2.9147 0.2761 4.6863
17 1 3.5781 1.0967 4.4134
18 6 3.5313 -0.5226 5.8398
19 7 3.7692 0.3597 6.9845
20 6 2.5301 0.7453 7.6637
21 6 1.7537 1.7464 6.8014
22 16 1.3115 0.9413 5.2303
23 1 -0.3635 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5138 -0.8899
26 1 1.6054 -0.2617 -2.1370
27 1 1.7515 -1.7715 -1.2057
28 1 2.6094 -1.9045 -3.2597
29 1 2.9320 0.9512 2.0450
30 1 1.2538 0.6546 2.5588
31 1 1.9757 -1.4091 3.7280
32 1 3.6540 -1.1130 3.2146
33 1 2.8492 -1.3206 6.1331
34 1 4.4774 -0.9559 5.5153
35 1 4.2994 1.1731 6.7101
36 1 1.9175 -0.1407 7.8303
37 1 2.7704 1.2036 8.6230
38 1 0.8476 2.0538 7.3235
39 1 2.3760 2.6189 6.6032
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000719971670.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:34
Heat of formation + Delta-G solvation = -70.949613 kcal
Electronic energy + Delta-G solvation = -17524.640731 eV
Core-core repulsion = 14785.383405 eV
Total energy + Delta-G solvation = -2739.257326 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.22799 -37.57918 -34.46983 -33.18320 -31.20861 -29.98825 -27.26190 -26.92896
-23.56797 -22.86411 -22.20280 -21.47757 -20.27800 -17.63180 -16.73872 -16.25476
-15.93373 -15.23855 -14.87808 -14.66993 -14.30963 -14.14031 -13.68706 -13.43190
-13.02794 -12.98025 -12.28123 -12.24023 -12.05671 -11.76610 -11.56107 -11.39422
-11.15935 -10.96199 -10.78451 -10.65054 -10.42851 -10.17709 -10.04917 -9.55530
-9.00271 -8.88758 -8.39072 -8.27275 -7.82278 -6.28946 -3.95731 1.42592
2.24313 3.46667 3.49668 3.68055 3.73523 4.10276 4.40811 4.54852
4.60200 4.70760 4.77698 4.97058 5.13886 5.19261 5.28471 5.42156
5.47579 5.49225 5.58942 5.64650 5.75110 5.79367 5.90491 6.05198
6.15000 6.18517 6.34252 6.52819 6.66849 6.81931 6.85787 7.30017
7.42113 8.09318 8.29491 8.53490 8.95504 9.74142 11.11917
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.026497 B = 0.004387 C = 0.003886
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.473529 B = 6380.373321 C = 7202.768129
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.100 3.900
3 H 0.047 0.953
4 C 0.010 3.990
5 C -0.587 4.587
6 H 0.047 0.953
7 C 0.012 3.988
8 N -0.917 5.917
9 Si 1.068 2.932
10 H -0.288 1.288
11 H -0.289 1.289
12 H -0.283 1.283
13 O -0.367 6.367
14 C 0.063 3.937
15 C -0.096 4.096
16 C -0.082 4.082
17 H 0.090 0.910
18 C 0.062 3.938
19 N -0.691 5.691
20 C 0.058 3.942
21 C -0.129 4.129
22 S -0.255 6.255
23 H 0.057 0.943
24 H 0.043 0.957
25 H 0.058 0.942
26 H 0.020 0.980
27 H 0.016 0.984
28 H 0.267 0.733
29 H 0.042 0.958
30 H 0.044 0.956
31 H 0.079 0.921
32 H 0.090 0.910
33 H 0.087 0.913
34 H 0.092 0.908
35 H 0.344 0.656
36 H 0.085 0.915
37 H 0.086 0.914
38 H 0.108 0.892
39 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.682 6.619 20.969 22.152
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.043 3.957
3 H 0.065 0.935
4 C -0.027 4.027
5 C -0.626 4.626
6 H 0.066 0.934
7 C -0.191 4.191
8 N -0.554 5.554
9 Si 0.897 3.103
10 H -0.215 1.215
11 H -0.216 1.216
12 H -0.208 1.208
13 O -0.286 6.286
14 C -0.014 4.014
15 C -0.135 4.135
16 C -0.213 4.213
17 H 0.108 0.892
18 C -0.069 4.069
19 N -0.320 5.320
20 C -0.073 4.073
21 C -0.280 4.280
22 S -0.029 6.029
23 H 0.076 0.924
24 H 0.062 0.938
25 H 0.077 0.923
26 H 0.038 0.962
27 H 0.034 0.966
28 H 0.078 0.922
29 H 0.060 0.940
30 H 0.062 0.938
31 H 0.098 0.902
32 H 0.108 0.892
33 H 0.106 0.894
34 H 0.111 0.889
35 H 0.163 0.837
36 H 0.104 0.896
37 H 0.104 0.896
38 H 0.126 0.874
39 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -2.205 5.417 20.011 20.848
hybrid contribution -0.749 1.665 0.830 2.006
sum -2.954 7.082 20.841 22.209
Atomic orbital electron populations
1.22344 0.98131 1.01883 1.00685 1.22178 0.90859 0.95938 0.86768
0.93536 1.19359 0.97355 0.95708 0.90241 1.21935 0.91620 1.38223
1.10783 0.93439 1.25810 1.06830 0.93657 0.92774 1.70783 1.10263
1.40177 1.34155 0.83556 0.74556 0.76128 0.76067 1.21497 1.21600
1.20811 1.87964 1.86730 1.34440 1.19508 1.22365 0.98792 0.93061
0.87198 1.21280 1.03584 0.97569 0.91076 1.24067 0.95648 1.01805
0.99743 0.89188 1.22341 1.01933 0.95371 0.87263 1.60067 1.19956
1.22780 1.29171 1.22230 0.90250 0.98112 0.96729 1.24310 1.05239
1.01383 0.97033 1.87354 1.17405 1.71642 1.26473 0.92412 0.93815
0.92251 0.96232 0.96557 0.92216 0.94006 0.93763 0.90214 0.89203
0.89412 0.88943 0.83711 0.89619 0.89580 0.87391 0.89971
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.20 9.53 37.15 0.35 -2.85 16
2 C 0.10 2.22 2.67 -26.73 -0.07 2.15 16
3 H 0.05 1.02 7.79 -51.93 -0.40 0.62 16
4 C 0.01 0.27 4.00 -27.88 -0.11 0.16 16
5 C -0.59 -17.25 8.88 -34.44 -0.31 -17.55 16
6 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16
7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16
8 N -0.92 -28.77 13.65 55.43 0.76 -28.01 16
9 Si 1.07 25.94 29.90 -169.99 -5.08 20.86 16
10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16
11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
13 O -0.37 -8.05 9.74 -35.23 -0.34 -8.39 16
14 C 0.06 1.09 5.58 37.16 0.21 1.30 16
15 C -0.10 -1.34 5.07 -26.73 -0.14 -1.48 16
16 C -0.08 -0.91 2.66 -26.60 -0.07 -0.98 16
17 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
18 C 0.06 0.58 5.72 -3.93 -0.02 0.56 16
19 N -0.69 -5.78 6.70 -114.14 -0.77 -6.55 16
20 C 0.06 0.43 6.42 -3.93 -0.03 0.40 16
21 C -0.13 -1.04 6.59 37.29 0.25 -0.79 16
22 S -0.26 -2.96 20.64 -107.50 -2.22 -5.18 16
23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
24 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16
25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
26 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16
27 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16
28 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16
29 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16
30 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16
31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16
33 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16
34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
35 H 0.34 2.59 8.65 -39.29 -0.34 2.25 16
36 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16
37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16
39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
LS Contribution 323.89 15.07 4.88 4.88
Total: -1.00 -32.34 323.89 -9.69 -42.03
By element:
Atomic # 1 Polarization: 6.05 SS G_CDS: -6.89 Total: -0.83 kcal
Atomic # 6 Polarization: -18.78 SS G_CDS: -0.03 Total: -18.81 kcal
Atomic # 7 Polarization: -34.55 SS G_CDS: -0.01 Total: -34.56 kcal
Atomic # 8 Polarization: -8.05 SS G_CDS: -0.34 Total: -8.39 kcal
Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.86 kcal
Atomic # 16 Polarization: -2.96 SS G_CDS: -2.22 Total: -5.18 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -32.34 -9.69 -42.03 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719971670.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.919 kcal
(2) G-P(sol) polarization free energy of solvation -32.340 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.950 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds