Wall clock time and date at job start Mon Mar 30 2020 04:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47076 * 2 1 4 4 C 1.53005 * 109.47233 * 239.99991 * 2 1 3 5 5 C 1.50695 * 109.47088 * 175.00020 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 O 1.42899 * 109.47014 * 120.00450 * 2 1 3 14 14 C 1.42907 * 113.99662 * 269.99627 * 13 2 1 15 15 C 1.53005 * 109.46878 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.46559 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.63240 * 304.99454 * 16 15 14 18 18 C 1.53250 * 109.62496 * 184.60634 * 16 15 14 19 19 N 1.46468 * 109.85790 * 178.28992 * 18 16 15 20 20 C 1.46468 * 112.55695 * 72.65994 * 19 18 16 21 21 C 1.53249 * 109.85928 * 287.34160 * 20 19 18 22 22 S 1.81895 * 109.63152 * 65.39636 * 16 15 14 23 23 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47028 * 299.99847 * 1 2 3 25 25 H 1.09000 * 109.47484 * 59.99824 * 1 2 3 26 26 H 1.09002 * 109.46935 * 54.99986 * 4 2 1 27 27 H 1.08998 * 109.47061 * 295.00779 * 4 2 1 28 28 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 29 29 H 1.09000 * 109.47190 * 299.99954 * 14 13 2 30 30 H 1.08994 * 109.46731 * 60.00084 * 14 13 2 31 31 H 1.08995 * 109.47269 * 300.00439 * 15 14 13 32 32 H 1.09000 * 109.46700 * 60.00428 * 15 14 13 33 33 H 1.08999 * 109.40980 * 298.41182 * 18 16 15 34 34 H 1.09002 * 109.41069 * 58.25647 * 18 16 15 35 35 H 1.00896 * 111.00160 * 307.55148 * 19 18 16 36 36 H 1.09001 * 109.40932 * 47.46054 * 20 19 18 37 37 H 1.09003 * 109.41043 * 167.21915 * 20 19 18 38 38 H 1.09000 * 109.62797 * 181.70539 * 21 20 19 39 39 H 1.08995 * 109.63093 * 302.09767 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8361 -3.3006 9 14 6.0920 -1.0615 -2.4367 10 1 6.6837 -1.6885 -1.2276 11 1 6.4854 0.3692 -2.4952 12 1 6.5870 -1.7614 -3.6493 13 8 2.0062 -0.6737 1.1667 14 6 2.2000 0.1829 2.2941 15 6 2.7078 -0.6410 3.4792 16 6 2.9147 0.2761 4.6863 17 1 3.5781 1.0967 4.4134 18 6 3.5313 -0.5226 5.8398 19 7 3.7692 0.3597 6.9845 20 6 2.5301 0.7453 7.6637 21 6 1.7537 1.7464 6.8014 22 16 1.3115 0.9413 5.2303 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6054 -0.2617 -2.1370 27 1 1.7515 -1.7715 -1.2057 28 1 2.6094 -1.9045 -3.2597 29 1 2.9320 0.9512 2.0450 30 1 1.2538 0.6546 2.5588 31 1 1.9757 -1.4091 3.7280 32 1 3.6540 -1.1130 3.2146 33 1 2.8492 -1.3206 6.1331 34 1 4.4774 -0.9559 5.5153 35 1 4.2994 1.1731 6.7101 36 1 1.9175 -0.1407 7.8303 37 1 2.7704 1.2036 8.6230 38 1 0.8476 2.0538 7.3235 39 1 2.3760 2.6189 6.6032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719971670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:34 Heat of formation + Delta-G solvation = -70.949613 kcal Electronic energy + Delta-G solvation = -17524.640731 eV Core-core repulsion = 14785.383405 eV Total energy + Delta-G solvation = -2739.257326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.22799 -37.57918 -34.46983 -33.18320 -31.20861 -29.98825 -27.26190 -26.92896 -23.56797 -22.86411 -22.20280 -21.47757 -20.27800 -17.63180 -16.73872 -16.25476 -15.93373 -15.23855 -14.87808 -14.66993 -14.30963 -14.14031 -13.68706 -13.43190 -13.02794 -12.98025 -12.28123 -12.24023 -12.05671 -11.76610 -11.56107 -11.39422 -11.15935 -10.96199 -10.78451 -10.65054 -10.42851 -10.17709 -10.04917 -9.55530 -9.00271 -8.88758 -8.39072 -8.27275 -7.82278 -6.28946 -3.95731 1.42592 2.24313 3.46667 3.49668 3.68055 3.73523 4.10276 4.40811 4.54852 4.60200 4.70760 4.77698 4.97058 5.13886 5.19261 5.28471 5.42156 5.47579 5.49225 5.58942 5.64650 5.75110 5.79367 5.90491 6.05198 6.15000 6.18517 6.34252 6.52819 6.66849 6.81931 6.85787 7.30017 7.42113 8.09318 8.29491 8.53490 8.95504 9.74142 11.11917 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.026497 B = 0.004387 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.473529 B = 6380.373321 C = 7202.768129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 H 0.047 0.953 4 C 0.010 3.990 5 C -0.587 4.587 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.068 2.932 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.283 1.283 13 O -0.367 6.367 14 C 0.063 3.937 15 C -0.096 4.096 16 C -0.082 4.082 17 H 0.090 0.910 18 C 0.062 3.938 19 N -0.691 5.691 20 C 0.058 3.942 21 C -0.129 4.129 22 S -0.255 6.255 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.344 0.656 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 6.619 20.969 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.043 3.957 3 H 0.065 0.935 4 C -0.027 4.027 5 C -0.626 4.626 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.897 3.103 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.208 1.208 13 O -0.286 6.286 14 C -0.014 4.014 15 C -0.135 4.135 16 C -0.213 4.213 17 H 0.108 0.892 18 C -0.069 4.069 19 N -0.320 5.320 20 C -0.073 4.073 21 C -0.280 4.280 22 S -0.029 6.029 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.205 5.417 20.011 20.848 hybrid contribution -0.749 1.665 0.830 2.006 sum -2.954 7.082 20.841 22.209 Atomic orbital electron populations 1.22344 0.98131 1.01883 1.00685 1.22178 0.90859 0.95938 0.86768 0.93536 1.19359 0.97355 0.95708 0.90241 1.21935 0.91620 1.38223 1.10783 0.93439 1.25810 1.06830 0.93657 0.92774 1.70783 1.10263 1.40177 1.34155 0.83556 0.74556 0.76128 0.76067 1.21497 1.21600 1.20811 1.87964 1.86730 1.34440 1.19508 1.22365 0.98792 0.93061 0.87198 1.21280 1.03584 0.97569 0.91076 1.24067 0.95648 1.01805 0.99743 0.89188 1.22341 1.01933 0.95371 0.87263 1.60067 1.19956 1.22780 1.29171 1.22230 0.90250 0.98112 0.96729 1.24310 1.05239 1.01383 0.97033 1.87354 1.17405 1.71642 1.26473 0.92412 0.93815 0.92251 0.96232 0.96557 0.92216 0.94006 0.93763 0.90214 0.89203 0.89412 0.88943 0.83711 0.89619 0.89580 0.87391 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.53 37.15 0.35 -2.85 16 2 C 0.10 2.22 2.67 -26.73 -0.07 2.15 16 3 H 0.05 1.02 7.79 -51.93 -0.40 0.62 16 4 C 0.01 0.27 4.00 -27.88 -0.11 0.16 16 5 C -0.59 -17.25 8.88 -34.44 -0.31 -17.55 16 6 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.77 13.65 55.43 0.76 -28.01 16 9 Si 1.07 25.94 29.90 -169.99 -5.08 20.86 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 O -0.37 -8.05 9.74 -35.23 -0.34 -8.39 16 14 C 0.06 1.09 5.58 37.16 0.21 1.30 16 15 C -0.10 -1.34 5.07 -26.73 -0.14 -1.48 16 16 C -0.08 -0.91 2.66 -26.60 -0.07 -0.98 16 17 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 18 C 0.06 0.58 5.72 -3.93 -0.02 0.56 16 19 N -0.69 -5.78 6.70 -114.14 -0.77 -6.55 16 20 C 0.06 0.43 6.42 -3.93 -0.03 0.40 16 21 C -0.13 -1.04 6.59 37.29 0.25 -0.79 16 22 S -0.26 -2.96 20.64 -107.50 -2.22 -5.18 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16 27 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 28 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 29 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.34 2.59 8.65 -39.29 -0.34 2.25 16 36 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -32.34 323.89 -9.69 -42.03 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.89 Total: -0.83 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.03 Total: -18.81 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.01 Total: -34.56 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.34 Total: -8.39 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.86 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.22 Total: -5.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.34 -9.69 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719971670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.919 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds