Wall clock time and date at job start Mon Mar 30 2020 04:41:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09002 * 109.47076 * 2 1
4 4 C 1.53005 * 109.47233 * 239.99991 * 2 1 3
5 5 C 1.50695 * 109.47088 * 175.00020 * 4 2 1
6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2
7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2
8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4
10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5
11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5
12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5
13 13 O 1.42899 * 109.47014 * 120.00450 * 2 1 3
14 14 C 1.42907 * 113.99662 * 269.99627 * 13 2 1
15 15 C 1.53005 * 109.46878 * 179.97438 * 14 13 2
16 16 C 1.53001 * 109.46559 * 180.02562 * 15 14 13
17 17 H 1.08998 * 109.63240 * 304.99454 * 16 15 14
18 18 C 1.53250 * 109.62496 * 184.60634 * 16 15 14
19 19 N 1.46468 * 109.85790 * 178.28992 * 18 16 15
20 20 C 1.46468 * 112.55695 * 72.65994 * 19 18 16
21 21 C 1.53249 * 109.85928 * 287.34160 * 20 19 18
22 22 S 1.81895 * 109.63152 * 65.39636 * 16 15 14
23 23 H 1.09000 * 109.47793 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.47028 * 299.99847 * 1 2 3
25 25 H 1.09000 * 109.47484 * 59.99824 * 1 2 3
26 26 H 1.09002 * 109.46935 * 54.99986 * 4 2 1
27 27 H 1.08998 * 109.47061 * 295.00779 * 4 2 1
28 28 H 0.97006 * 119.99995 * 359.97438 * 8 7 5
29 29 H 1.09000 * 109.47190 * 299.99954 * 14 13 2
30 30 H 1.08994 * 109.46731 * 60.00084 * 14 13 2
31 31 H 1.08995 * 109.47269 * 300.00439 * 15 14 13
32 32 H 1.09000 * 109.46700 * 60.00428 * 15 14 13
33 33 H 1.08999 * 109.40980 * 298.41182 * 18 16 15
34 34 H 1.09002 * 109.41069 * 58.25647 * 18 16 15
35 35 H 1.00896 * 111.00160 * 307.55148 * 19 18 16
36 36 H 1.09001 * 109.40932 * 47.46054 * 20 19 18
37 37 H 1.09003 * 109.41043 * 167.21915 * 20 19 18
38 38 H 1.09000 * 109.62797 * 181.70539 * 21 20 19
39 39 H 1.08995 * 109.63093 * 302.09767 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 3.5418 -0.6149 -1.3127
6 1 4.0790 -0.0862 -0.5392
7 6 4.2302 -1.1927 -2.3584
8 7 3.5762 -1.8361 -3.3006
9 14 6.0920 -1.0615 -2.4367
10 1 6.6837 -1.6885 -1.2276
11 1 6.4854 0.3692 -2.4952
12 1 6.5870 -1.7614 -3.6493
13 8 2.0062 -0.6737 1.1667
14 6 2.2000 0.1829 2.2941
15 6 2.7078 -0.6410 3.4792
16 6 2.9147 0.2761 4.6863
17 1 3.5781 1.0967 4.4134
18 6 3.5313 -0.5226 5.8398
19 7 3.7692 0.3597 6.9845
20 6 2.5301 0.7453 7.6637
21 6 1.7537 1.7464 6.8014
22 16 1.3115 0.9413 5.2303
23 1 -0.3635 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5138 -0.8899
26 1 1.6054 -0.2617 -2.1370
27 1 1.7515 -1.7715 -1.2057
28 1 2.6094 -1.9045 -3.2597
29 1 2.9320 0.9512 2.0450
30 1 1.2538 0.6546 2.5588
31 1 1.9757 -1.4091 3.7280
32 1 3.6540 -1.1130 3.2146
33 1 2.8492 -1.3206 6.1331
34 1 4.4774 -0.9559 5.5153
35 1 4.2994 1.1731 6.7101
36 1 1.9175 -0.1407 7.8303
37 1 2.7704 1.2036 8.6230
38 1 0.8476 2.0538 7.3235
39 1 2.3760 2.6189 6.6032
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000719971670.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:34
Heat of formation + Delta-G solvation = -92.340547 kcal
Electronic energy + Delta-G solvation = -17525.568311 eV
Core-core repulsion = 14785.383405 eV
Total energy + Delta-G solvation = -2740.184906 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.54663 -38.64045 -35.99079 -34.89207 -32.86407 -30.88484 -28.98048 -28.20345
-25.19404 -24.30884 -22.94718 -22.63275 -22.02745 -18.98150 -18.42854 -17.82733
-17.02469 -16.09840 -15.83588 -15.80854 -15.58579 -15.40837 -15.29943 -14.76047
-14.58472 -14.18957 -13.59670 -13.50773 -13.39383 -13.12036 -13.00323 -12.70390
-12.63589 -12.49486 -12.23195 -12.08582 -11.92745 -11.64051 -11.42327 -11.05792
-10.80698 -10.55054 -10.29047 -9.73140 -8.69469 -8.67546 -6.35745 0.61057
1.46198 1.51034 1.60367 1.79730 2.57356 2.67150 3.13838 3.19229
3.58971 3.77649 3.84980 4.00911 4.03047 4.10200 4.16682 4.28212
4.32439 4.40819 4.42616 4.43576 4.55970 4.70048 4.71696 4.87401
4.92222 4.93273 4.97713 5.02675 5.08330 5.19471 5.30883 5.86321
5.98986 6.17900 6.26369 6.43850 6.60467 7.43773 8.73725
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.026497 B = 0.004387 C = 0.003886
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.473529 B = 6380.373321 C = 7202.768129
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.104 3.896
3 H 0.047 0.953
4 C 0.010 3.990
5 C -0.602 4.602
6 H 0.046 0.954
7 C -0.041 4.041
8 N -0.940 5.940
9 Si 1.117 2.883
10 H -0.271 1.271
11 H -0.267 1.267
12 H -0.282 1.282
13 O -0.394 6.394
14 C 0.063 3.937
15 C -0.090 4.090
16 C -0.066 4.066
17 H 0.093 0.907
18 C 0.069 3.931
19 N -0.692 5.692
20 C 0.060 3.940
21 C -0.111 4.111
22 S -0.310 6.310
23 H 0.053 0.947
24 H 0.066 0.934
25 H 0.070 0.930
26 H 0.009 0.991
27 H -0.011 1.011
28 H 0.254 0.746
29 H 0.038 0.962
30 H 0.052 0.948
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.083 0.917
34 H 0.097 0.903
35 H 0.351 0.649
36 H 0.079 0.921
37 H 0.109 0.891
38 H 0.121 0.879
39 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.774 7.784 23.047 24.391
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.047 3.953
3 H 0.065 0.935
4 C -0.027 4.027
5 C -0.640 4.640
6 H 0.064 0.936
7 C -0.237 4.237
8 N -0.578 5.578
9 Si 0.938 3.062
10 H -0.196 1.196
11 H -0.192 1.192
12 H -0.207 1.207
13 O -0.314 6.314
14 C -0.014 4.014
15 C -0.128 4.128
16 C -0.197 4.197
17 H 0.111 0.889
18 C -0.063 4.063
19 N -0.320 5.320
20 C -0.071 4.071
21 C -0.261 4.261
22 S -0.084 6.084
23 H 0.072 0.928
24 H 0.085 0.915
25 H 0.089 0.911
26 H 0.027 0.973
27 H 0.008 0.992
28 H 0.064 0.936
29 H 0.056 0.944
30 H 0.070 0.930
31 H 0.093 0.907
32 H 0.104 0.896
33 H 0.101 0.899
34 H 0.115 0.885
35 H 0.170 0.830
36 H 0.098 0.902
37 H 0.127 0.873
38 H 0.139 0.861
39 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -1.318 6.600 22.116 23.117
hybrid contribution -1.080 1.333 0.254 1.735
sum -2.398 7.933 22.370 23.856
Atomic orbital electron populations
1.22224 0.95189 1.02187 1.02413 1.21975 0.93130 0.94847 0.85394
0.93506 1.19291 0.96414 0.94543 0.92447 1.22298 0.93100 1.37925
1.10671 0.93607 1.27426 1.11443 0.92652 0.92217 1.70919 1.09624
1.41910 1.35374 0.82951 0.69053 0.77528 0.76686 1.19645 1.19218
1.20735 1.87910 1.87045 1.36026 1.20410 1.22557 0.99235 0.93059
0.86565 1.21214 1.02950 0.97653 0.91033 1.23936 0.95292 1.01390
0.99040 0.88918 1.22258 1.01788 0.95239 0.86996 1.60092 1.20480
1.23116 1.28362 1.22279 0.89644 0.97867 0.97294 1.24373 1.06072
1.01247 0.94407 1.87507 1.18610 1.72520 1.29811 0.92834 0.91479
0.91079 0.97336 0.99225 0.93643 0.94388 0.93019 0.90698 0.89638
0.89897 0.88469 0.82963 0.90218 0.87279 0.86056 0.89047
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.91 9.53 71.98 0.69 -5.22 16
2 C 0.10 4.64 2.67 30.59 0.08 4.73 16
3 H 0.05 2.06 7.79 -2.39 -0.02 2.04 16
4 C 0.01 0.55 4.00 29.85 0.12 0.67 16
5 C -0.60 -35.83 8.88 25.60 0.23 -35.60 16
6 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16
7 C -0.04 -2.44 5.46 84.66 0.46 -1.98 16
8 N -0.94 -60.09 13.65 21.45 0.29 -59.79 16
9 Si 1.12 51.65 29.90 68.60 2.05 53.70 16
10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
13 O -0.39 -17.38 9.74 -148.98 -1.45 -18.83 16
14 C 0.06 2.13 5.58 71.98 0.40 2.54 16
15 C -0.09 -2.46 5.07 30.60 0.16 -2.30 16
16 C -0.07 -1.38 2.66 30.68 0.08 -1.30 16
17 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
18 C 0.07 1.18 5.72 86.47 0.49 1.67 16
19 N -0.69 -9.85 6.70 -515.03 -3.45 -13.30 16
20 C 0.06 0.72 6.42 86.47 0.56 1.27 16
21 C -0.11 -1.49 6.59 72.07 0.47 -1.02 16
22 S -0.31 -6.79 20.64 -56.49 -1.17 -7.96 16
23 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
24 H 0.07 2.11 7.87 -2.38 -0.02 2.09 16
25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
26 H 0.01 0.48 8.01 -2.39 -0.02 0.46 16
27 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16
28 H 0.25 16.44 7.22 -92.70 -0.67 15.77 16
29 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16
30 H 0.05 1.68 6.89 -2.39 -0.02 1.67 16
31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16
33 H 0.08 1.52 7.91 -2.39 -0.02 1.50 16
34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
35 H 0.35 4.31 8.65 -89.70 -0.78 3.53 16
36 H 0.08 1.09 7.92 -2.39 -0.02 1.07 16
37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16
38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
Total: -1.00 -70.02 323.89 0.34 -69.68
By element:
Atomic # 1 Polarization: 12.72 SS G_CDS: 0.33 Total: 13.05 kcal
Atomic # 6 Polarization: -40.28 SS G_CDS: 3.74 Total: -36.54 kcal
Atomic # 7 Polarization: -69.94 SS G_CDS: -3.16 Total: -73.09 kcal
Atomic # 8 Polarization: -17.38 SS G_CDS: -1.45 Total: -18.83 kcal
Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal
Atomic # 16 Polarization: -6.79 SS G_CDS: -1.17 Total: -7.96 kcal
Total: -70.02 0.34 -69.68 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719971670.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.661 kcal
(2) G-P(sol) polarization free energy of solvation -70.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds