Wall clock time and date at job start Mon Mar 30 2020 04:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47076 * 2 1 4 4 C 1.53005 * 109.47233 * 239.99991 * 2 1 3 5 5 C 1.50695 * 109.47088 * 175.00020 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 O 1.42899 * 109.47014 * 120.00450 * 2 1 3 14 14 C 1.42907 * 113.99662 * 269.99627 * 13 2 1 15 15 C 1.53005 * 109.46878 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.46559 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.63240 * 304.99454 * 16 15 14 18 18 C 1.53250 * 109.62496 * 184.60634 * 16 15 14 19 19 N 1.46468 * 109.85790 * 178.28992 * 18 16 15 20 20 C 1.46468 * 112.55695 * 72.65994 * 19 18 16 21 21 C 1.53249 * 109.85928 * 287.34160 * 20 19 18 22 22 S 1.81895 * 109.63152 * 65.39636 * 16 15 14 23 23 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47028 * 299.99847 * 1 2 3 25 25 H 1.09000 * 109.47484 * 59.99824 * 1 2 3 26 26 H 1.09002 * 109.46935 * 54.99986 * 4 2 1 27 27 H 1.08998 * 109.47061 * 295.00779 * 4 2 1 28 28 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 29 29 H 1.09000 * 109.47190 * 299.99954 * 14 13 2 30 30 H 1.08994 * 109.46731 * 60.00084 * 14 13 2 31 31 H 1.08995 * 109.47269 * 300.00439 * 15 14 13 32 32 H 1.09000 * 109.46700 * 60.00428 * 15 14 13 33 33 H 1.08999 * 109.40980 * 298.41182 * 18 16 15 34 34 H 1.09002 * 109.41069 * 58.25647 * 18 16 15 35 35 H 1.00896 * 111.00160 * 307.55148 * 19 18 16 36 36 H 1.09001 * 109.40932 * 47.46054 * 20 19 18 37 37 H 1.09003 * 109.41043 * 167.21915 * 20 19 18 38 38 H 1.09000 * 109.62797 * 181.70539 * 21 20 19 39 39 H 1.08995 * 109.63093 * 302.09767 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8361 -3.3006 9 14 6.0920 -1.0615 -2.4367 10 1 6.6837 -1.6885 -1.2276 11 1 6.4854 0.3692 -2.4952 12 1 6.5870 -1.7614 -3.6493 13 8 2.0062 -0.6737 1.1667 14 6 2.2000 0.1829 2.2941 15 6 2.7078 -0.6410 3.4792 16 6 2.9147 0.2761 4.6863 17 1 3.5781 1.0967 4.4134 18 6 3.5313 -0.5226 5.8398 19 7 3.7692 0.3597 6.9845 20 6 2.5301 0.7453 7.6637 21 6 1.7537 1.7464 6.8014 22 16 1.3115 0.9413 5.2303 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6054 -0.2617 -2.1370 27 1 1.7515 -1.7715 -1.2057 28 1 2.6094 -1.9045 -3.2597 29 1 2.9320 0.9512 2.0450 30 1 1.2538 0.6546 2.5588 31 1 1.9757 -1.4091 3.7280 32 1 3.6540 -1.1130 3.2146 33 1 2.8492 -1.3206 6.1331 34 1 4.4774 -0.9559 5.5153 35 1 4.2994 1.1731 6.7101 36 1 1.9175 -0.1407 7.8303 37 1 2.7704 1.2036 8.6230 38 1 0.8476 2.0538 7.3235 39 1 2.3760 2.6189 6.6032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719971670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:34 Heat of formation + Delta-G solvation = -92.340547 kcal Electronic energy + Delta-G solvation = -17525.568311 eV Core-core repulsion = 14785.383405 eV Total energy + Delta-G solvation = -2740.184906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54663 -38.64045 -35.99079 -34.89207 -32.86407 -30.88484 -28.98048 -28.20345 -25.19404 -24.30884 -22.94718 -22.63275 -22.02745 -18.98150 -18.42854 -17.82733 -17.02469 -16.09840 -15.83588 -15.80854 -15.58579 -15.40837 -15.29943 -14.76047 -14.58472 -14.18957 -13.59670 -13.50773 -13.39383 -13.12036 -13.00323 -12.70390 -12.63589 -12.49486 -12.23195 -12.08582 -11.92745 -11.64051 -11.42327 -11.05792 -10.80698 -10.55054 -10.29047 -9.73140 -8.69469 -8.67546 -6.35745 0.61057 1.46198 1.51034 1.60367 1.79730 2.57356 2.67150 3.13838 3.19229 3.58971 3.77649 3.84980 4.00911 4.03047 4.10200 4.16682 4.28212 4.32439 4.40819 4.42616 4.43576 4.55970 4.70048 4.71696 4.87401 4.92222 4.93273 4.97713 5.02675 5.08330 5.19471 5.30883 5.86321 5.98986 6.17900 6.26369 6.43850 6.60467 7.43773 8.73725 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.026497 B = 0.004387 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.473529 B = 6380.373321 C = 7202.768129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 H 0.047 0.953 4 C 0.010 3.990 5 C -0.602 4.602 6 H 0.046 0.954 7 C -0.041 4.041 8 N -0.940 5.940 9 Si 1.117 2.883 10 H -0.271 1.271 11 H -0.267 1.267 12 H -0.282 1.282 13 O -0.394 6.394 14 C 0.063 3.937 15 C -0.090 4.090 16 C -0.066 4.066 17 H 0.093 0.907 18 C 0.069 3.931 19 N -0.692 5.692 20 C 0.060 3.940 21 C -0.111 4.111 22 S -0.310 6.310 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.009 0.991 27 H -0.011 1.011 28 H 0.254 0.746 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.351 0.649 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 7.784 23.047 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.065 0.935 4 C -0.027 4.027 5 C -0.640 4.640 6 H 0.064 0.936 7 C -0.237 4.237 8 N -0.578 5.578 9 Si 0.938 3.062 10 H -0.196 1.196 11 H -0.192 1.192 12 H -0.207 1.207 13 O -0.314 6.314 14 C -0.014 4.014 15 C -0.128 4.128 16 C -0.197 4.197 17 H 0.111 0.889 18 C -0.063 4.063 19 N -0.320 5.320 20 C -0.071 4.071 21 C -0.261 4.261 22 S -0.084 6.084 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.008 0.992 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.170 0.830 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.318 6.600 22.116 23.117 hybrid contribution -1.080 1.333 0.254 1.735 sum -2.398 7.933 22.370 23.856 Atomic orbital electron populations 1.22224 0.95189 1.02187 1.02413 1.21975 0.93130 0.94847 0.85394 0.93506 1.19291 0.96414 0.94543 0.92447 1.22298 0.93100 1.37925 1.10671 0.93607 1.27426 1.11443 0.92652 0.92217 1.70919 1.09624 1.41910 1.35374 0.82951 0.69053 0.77528 0.76686 1.19645 1.19218 1.20735 1.87910 1.87045 1.36026 1.20410 1.22557 0.99235 0.93059 0.86565 1.21214 1.02950 0.97653 0.91033 1.23936 0.95292 1.01390 0.99040 0.88918 1.22258 1.01788 0.95239 0.86996 1.60092 1.20480 1.23116 1.28362 1.22279 0.89644 0.97867 0.97294 1.24373 1.06072 1.01247 0.94407 1.87507 1.18610 1.72520 1.29811 0.92834 0.91479 0.91079 0.97336 0.99225 0.93643 0.94388 0.93019 0.90698 0.89638 0.89897 0.88469 0.82963 0.90218 0.87279 0.86056 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.91 9.53 71.98 0.69 -5.22 16 2 C 0.10 4.64 2.67 30.59 0.08 4.73 16 3 H 0.05 2.06 7.79 -2.39 -0.02 2.04 16 4 C 0.01 0.55 4.00 29.85 0.12 0.67 16 5 C -0.60 -35.83 8.88 25.60 0.23 -35.60 16 6 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 7 C -0.04 -2.44 5.46 84.66 0.46 -1.98 16 8 N -0.94 -60.09 13.65 21.45 0.29 -59.79 16 9 Si 1.12 51.65 29.90 68.60 2.05 53.70 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 O -0.39 -17.38 9.74 -148.98 -1.45 -18.83 16 14 C 0.06 2.13 5.58 71.98 0.40 2.54 16 15 C -0.09 -2.46 5.07 30.60 0.16 -2.30 16 16 C -0.07 -1.38 2.66 30.68 0.08 -1.30 16 17 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 18 C 0.07 1.18 5.72 86.47 0.49 1.67 16 19 N -0.69 -9.85 6.70 -515.03 -3.45 -13.30 16 20 C 0.06 0.72 6.42 86.47 0.56 1.27 16 21 C -0.11 -1.49 6.59 72.07 0.47 -1.02 16 22 S -0.31 -6.79 20.64 -56.49 -1.17 -7.96 16 23 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.07 2.11 7.87 -2.38 -0.02 2.09 16 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.01 0.48 8.01 -2.39 -0.02 0.46 16 27 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 28 H 0.25 16.44 7.22 -92.70 -0.67 15.77 16 29 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.05 1.68 6.89 -2.39 -0.02 1.67 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 1.52 7.91 -2.39 -0.02 1.50 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.35 4.31 8.65 -89.70 -0.78 3.53 16 36 H 0.08 1.09 7.92 -2.39 -0.02 1.07 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.02 323.89 0.34 -69.68 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.33 Total: 13.05 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 3.74 Total: -36.54 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -3.16 Total: -73.09 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.45 Total: -18.83 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -1.17 Total: -7.96 kcal Total: -70.02 0.34 -69.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719971670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.661 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds