Wall clock time and date at job start Mon Mar 30 2020 04:41:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09001 * 109.46539 * 2 1
4 4 C 1.53001 * 109.47026 * 119.99899 * 2 1 3
5 5 C 1.50701 * 109.46991 * 185.00159 * 4 2 1
6 6 H 1.07997 * 119.99689 * 0.02562 * 5 4 2
7 7 C 1.37881 * 119.99897 * 179.97438 * 5 4 2
8 8 N 1.31513 * 119.99782 * 359.97438 * 7 5 4
9 9 Si 1.86790 * 119.99922 * 180.02562 * 7 5 4
10 10 H 1.48506 * 109.47271 * 59.99845 * 9 7 5
11 11 H 1.48497 * 109.47255 * 179.97438 * 9 7 5
12 12 H 1.48506 * 109.47374 * 300.00108 * 9 7 5
13 13 O 1.42899 * 109.46946 * 239.99799 * 2 1 3
14 14 C 1.42905 * 113.99785 * 90.00357 * 13 2 1
15 15 C 1.52999 * 109.46735 * 179.97438 * 14 13 2
16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13
17 17 H 1.08996 * 109.63003 * 55.39185 * 16 15 14
18 18 C 1.53254 * 109.62670 * 175.98552 * 16 15 14
19 19 N 1.46468 * 109.85681 * 181.70901 * 18 16 15
20 20 C 1.46468 * 112.56014 * 287.34363 * 19 18 16
21 21 C 1.53251 * 109.86071 * 72.65564 * 20 19 18
22 22 S 1.81899 * 109.62961 * 294.99569 * 16 15 14
23 23 H 1.09001 * 109.47258 * 299.99773 * 1 2 3
24 24 H 1.08997 * 109.47405 * 60.00136 * 1 2 3
25 25 H 1.09005 * 109.46980 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.47066 * 305.00195 * 4 2 1
27 27 H 1.09001 * 109.47321 * 65.00174 * 4 2 1
28 28 H 0.97000 * 119.99929 * 179.97438 * 8 7 5
29 29 H 1.08993 * 109.47057 * 59.99308 * 14 13 2
30 30 H 1.09000 * 109.46838 * 299.99546 * 14 13 2
31 31 H 1.08993 * 109.47839 * 59.99877 * 15 14 13
32 32 H 1.09000 * 109.47160 * 299.99439 * 15 14 13
33 33 H 1.09003 * 109.40142 * 301.82201 * 18 16 15
34 34 H 1.08989 * 109.40658 * 61.58974 * 18 16 15
35 35 H 1.00902 * 110.99952 * 52.45054 * 19 18 16
36 36 H 1.09003 * 109.40228 * 312.53769 * 20 19 18
37 37 H 1.09001 * 109.40874 * 192.77989 * 20 19 18
38 38 H 1.09000 * 109.63068 * 178.29813 * 21 20 19
39 39 H 1.08995 * 109.79517 * 57.80137 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5419 -0.6149 1.3128
6 1 4.0789 -0.0854 0.5396
7 6 4.2304 -1.1926 2.3584
8 7 3.5762 -1.8360 3.3006
9 14 6.0919 -1.0601 2.4375
10 1 6.4843 0.3710 2.4967
11 1 6.5868 -1.7591 3.6506
12 1 6.6846 -1.6862 1.2283
13 8 2.0063 -0.6737 -1.1668
14 6 2.2001 0.1829 -2.2941
15 6 2.7091 -0.6407 -3.4788
16 6 2.9159 0.2764 -4.6860
17 1 3.5841 1.0937 -4.4147
18 6 3.5200 -0.5253 -5.8439
19 7 3.7580 0.3566 -6.9889
20 6 2.5181 0.7525 -7.6605
21 6 1.7540 1.7582 -6.7925
22 16 1.3139 0.9495 -5.2236
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 1.6053 -0.2617 2.1370
27 1 1.7517 -1.7715 1.2056
28 1 4.0606 -2.2427 4.0360
29 1 2.9319 0.9513 -2.0450
30 1 1.2538 0.6546 -2.5588
31 1 1.9776 -1.4093 -3.7280
32 1 3.6555 -1.1120 -3.2137
33 1 4.4640 -0.9672 -5.5248
34 1 2.8304 -1.3177 -6.1344
35 1 4.2958 1.1657 -6.7164
36 1 1.8980 -0.1288 -7.8248
37 1 2.7564 1.2103 -8.6206
38 1 0.8472 2.0731 -7.3090
39 1 2.3823 2.6263 -6.5935
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000719971675.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:41
Heat of formation + Delta-G solvation = -67.096441 kcal
Electronic energy + Delta-G solvation = -17495.992795 eV
Core-core repulsion = 14756.902555 eV
Total energy + Delta-G solvation = -2739.090240 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.18553 -37.50106 -34.36356 -32.92501 -31.21797 -29.96868 -27.33884 -27.16542
-23.60400 -22.93808 -22.17678 -21.43408 -19.99328 -17.60063 -16.31018 -16.12016
-15.89338 -15.20756 -14.82992 -14.67032 -14.57969 -14.10867 -14.00221 -13.37762
-12.98364 -12.50133 -12.27712 -12.03986 -11.99440 -11.77421 -11.54584 -11.35782
-11.19115 -10.93307 -10.68302 -10.65296 -10.56100 -10.21349 -9.98080 -9.37089
-9.13158 -8.97214 -8.56063 -8.30994 -7.79273 -5.93953 -3.94220 1.45217
2.27329 3.36609 3.40729 3.43348 3.75818 4.15667 4.43313 4.50956
4.58385 4.73013 4.80731 4.99195 5.17700 5.22524 5.30978 5.42612
5.46311 5.50438 5.64713 5.68049 5.81079 5.88661 6.01471 6.16138
6.21276 6.23854 6.43587 6.54872 6.79552 6.87600 6.98110 7.57633
7.70411 8.03723 8.22542 8.48834 9.09477 9.67670 11.17839
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.026586 B = 0.004372 C = 0.003878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1052.931599 B = 6402.266673 C = 7219.244271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.093 3.907
3 H 0.045 0.955
4 C 0.024 3.976
5 C -0.507 4.507
6 H 0.053 0.947
7 C 0.055 3.945
8 N -0.899 5.899
9 Si 0.891 3.109
10 H -0.278 1.278
11 H -0.288 1.288
12 H -0.277 1.277
13 O -0.368 6.368
14 C 0.063 3.937
15 C -0.096 4.096
16 C -0.082 4.082
17 H 0.090 0.910
18 C 0.062 3.938
19 N -0.692 5.692
20 C 0.058 3.942
21 C -0.130 4.130
22 S -0.254 6.254
23 H 0.059 0.941
24 H 0.040 0.960
25 H 0.057 0.943
26 H 0.030 0.970
27 H 0.025 0.975
28 H 0.260 0.740
29 H 0.041 0.959
30 H 0.044 0.956
31 H 0.079 0.921
32 H 0.089 0.911
33 H 0.092 0.908
34 H 0.087 0.913
35 H 0.344 0.656
36 H 0.085 0.915
37 H 0.086 0.914
38 H 0.108 0.892
39 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.733 6.330 -20.437 21.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.035 3.965
3 H 0.063 0.937
4 C -0.013 4.013
5 C -0.545 4.545
6 H 0.072 0.928
7 C -0.145 4.145
8 N -0.539 5.539
9 Si 0.720 3.280
10 H -0.204 1.204
11 H -0.213 1.213
12 H -0.203 1.203
13 O -0.287 6.287
14 C -0.015 4.015
15 C -0.135 4.135
16 C -0.213 4.213
17 H 0.108 0.892
18 C -0.069 4.069
19 N -0.320 5.320
20 C -0.073 4.073
21 C -0.280 4.280
22 S -0.028 6.028
23 H 0.078 0.922
24 H 0.059 0.941
25 H 0.076 0.924
26 H 0.048 0.952
27 H 0.044 0.956
28 H 0.070 0.930
29 H 0.059 0.941
30 H 0.062 0.938
31 H 0.098 0.902
32 H 0.108 0.892
33 H 0.110 0.890
34 H 0.106 0.894
35 H 0.163 0.837
36 H 0.104 0.896
37 H 0.104 0.896
38 H 0.126 0.874
39 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -3.562 5.456 -20.210 21.234
hybrid contribution 1.683 1.229 0.257 2.100
sum -1.879 6.685 -19.953 21.127
Atomic orbital electron populations
1.22327 0.98191 1.01880 1.00526 1.22374 0.90993 0.96030 0.87068
0.93688 1.19242 0.96215 0.96360 0.89477 1.21097 0.91951 1.33969
1.07493 0.92842 1.24990 0.98253 0.95501 0.95798 1.69948 1.35491
1.36290 1.12149 0.86669 0.85988 0.78074 0.77317 1.20400 1.21334
1.20277 1.87973 1.86735 1.34450 1.19529 1.22355 0.98755 0.93058
0.87291 1.21284 1.03569 0.97574 0.91112 1.24078 0.95665 1.01752
0.99777 0.89194 1.22340 1.02020 0.95350 0.87214 1.60068 1.19502
1.22932 1.29491 1.22231 0.90343 0.97998 0.96736 1.24303 1.05274
1.01358 0.97106 1.87348 1.17552 1.71236 1.26665 0.92219 0.94072
0.92383 0.95232 0.95633 0.93023 0.94070 0.93775 0.90204 0.89237
0.88984 0.89406 0.83732 0.89610 0.89629 0.87406 0.89970
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.18 9.53 37.16 0.35 -2.83 16
2 C 0.09 2.04 2.67 -26.73 -0.07 1.97 16
3 H 0.04 0.97 7.79 -51.93 -0.40 0.57 16
4 C 0.02 0.64 4.68 -27.88 -0.13 0.51 16
5 C -0.51 -14.68 8.88 -34.44 -0.31 -14.99 16
6 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16
7 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16
8 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16
9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16
10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
13 O -0.37 -7.97 9.74 -35.23 -0.34 -8.31 16
14 C 0.06 1.08 5.58 37.16 0.21 1.28 16
15 C -0.10 -1.34 5.07 -26.73 -0.14 -1.47 16
16 C -0.08 -0.91 2.68 -26.60 -0.07 -0.98 16
17 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
18 C 0.06 0.58 5.71 -3.93 -0.02 0.56 16
19 N -0.69 -5.81 6.70 -114.14 -0.77 -6.58 16
20 C 0.06 0.43 6.42 -3.93 -0.03 0.41 16
21 C -0.13 -1.05 6.59 37.29 0.25 -0.80 16
22 S -0.25 -2.95 20.60 -107.50 -2.21 -5.16 16
23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
24 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16
25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16
27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
29 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16
30 H 0.04 0.73 6.88 -51.93 -0.36 0.37 16
31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16
33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.09 0.86 7.91 -51.94 -0.41 0.45 16
35 H 0.34 2.60 8.65 -39.29 -0.34 2.26 16
36 H 0.09 0.69 7.92 -51.93 -0.41 0.28 16
37 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16
38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16
39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 325.15 15.07 4.90 4.90
Total: -1.00 -31.40 325.15 -9.70 -41.11
By element:
Atomic # 1 Polarization: 5.50 SS G_CDS: -6.94 Total: -1.44 kcal
Atomic # 6 Polarization: -14.78 SS G_CDS: -0.05 Total: -14.83 kcal
Atomic # 7 Polarization: -33.28 SS G_CDS: -0.03 Total: -33.30 kcal
Atomic # 8 Polarization: -7.97 SS G_CDS: -0.34 Total: -8.31 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal
Atomic # 16 Polarization: -2.95 SS G_CDS: -2.21 Total: -5.16 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -31.40 -9.70 -41.11 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719971675.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.990 kcal
(2) G-P(sol) polarization free energy of solvation -31.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds