Wall clock time and date at job start Mon Mar 30 2020 04:41:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09001 * 109.46539 * 2 1
4 4 C 1.53001 * 109.47026 * 119.99899 * 2 1 3
5 5 C 1.50701 * 109.46991 * 185.00159 * 4 2 1
6 6 H 1.07997 * 119.99689 * 0.02562 * 5 4 2
7 7 C 1.37881 * 119.99897 * 179.97438 * 5 4 2
8 8 N 1.31513 * 119.99782 * 359.97438 * 7 5 4
9 9 Si 1.86790 * 119.99922 * 180.02562 * 7 5 4
10 10 H 1.48506 * 109.47271 * 59.99845 * 9 7 5
11 11 H 1.48497 * 109.47255 * 179.97438 * 9 7 5
12 12 H 1.48506 * 109.47374 * 300.00108 * 9 7 5
13 13 O 1.42899 * 109.46946 * 239.99799 * 2 1 3
14 14 C 1.42905 * 113.99785 * 90.00357 * 13 2 1
15 15 C 1.52999 * 109.46735 * 179.97438 * 14 13 2
16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13
17 17 H 1.08996 * 109.63003 * 55.39185 * 16 15 14
18 18 C 1.53254 * 109.62670 * 175.98552 * 16 15 14
19 19 N 1.46468 * 109.85681 * 181.70901 * 18 16 15
20 20 C 1.46468 * 112.56014 * 287.34363 * 19 18 16
21 21 C 1.53251 * 109.86071 * 72.65564 * 20 19 18
22 22 S 1.81899 * 109.62961 * 294.99569 * 16 15 14
23 23 H 1.09001 * 109.47258 * 299.99773 * 1 2 3
24 24 H 1.08997 * 109.47405 * 60.00136 * 1 2 3
25 25 H 1.09005 * 109.46980 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.47066 * 305.00195 * 4 2 1
27 27 H 1.09001 * 109.47321 * 65.00174 * 4 2 1
28 28 H 0.97000 * 119.99929 * 179.97438 * 8 7 5
29 29 H 1.08993 * 109.47057 * 59.99308 * 14 13 2
30 30 H 1.09000 * 109.46838 * 299.99546 * 14 13 2
31 31 H 1.08993 * 109.47839 * 59.99877 * 15 14 13
32 32 H 1.09000 * 109.47160 * 299.99439 * 15 14 13
33 33 H 1.09003 * 109.40142 * 301.82201 * 18 16 15
34 34 H 1.08989 * 109.40658 * 61.58974 * 18 16 15
35 35 H 1.00902 * 110.99952 * 52.45054 * 19 18 16
36 36 H 1.09003 * 109.40228 * 312.53769 * 20 19 18
37 37 H 1.09001 * 109.40874 * 192.77989 * 20 19 18
38 38 H 1.09000 * 109.63068 * 178.29813 * 21 20 19
39 39 H 1.08995 * 109.79517 * 57.80137 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5419 -0.6149 1.3128
6 1 4.0789 -0.0854 0.5396
7 6 4.2304 -1.1926 2.3584
8 7 3.5762 -1.8360 3.3006
9 14 6.0919 -1.0601 2.4375
10 1 6.4843 0.3710 2.4967
11 1 6.5868 -1.7591 3.6506
12 1 6.6846 -1.6862 1.2283
13 8 2.0063 -0.6737 -1.1668
14 6 2.2001 0.1829 -2.2941
15 6 2.7091 -0.6407 -3.4788
16 6 2.9159 0.2764 -4.6860
17 1 3.5841 1.0937 -4.4147
18 6 3.5200 -0.5253 -5.8439
19 7 3.7580 0.3566 -6.9889
20 6 2.5181 0.7525 -7.6605
21 6 1.7540 1.7582 -6.7925
22 16 1.3139 0.9495 -5.2236
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 1.6053 -0.2617 2.1370
27 1 1.7517 -1.7715 1.2056
28 1 4.0606 -2.2427 4.0360
29 1 2.9319 0.9513 -2.0450
30 1 1.2538 0.6546 -2.5588
31 1 1.9776 -1.4093 -3.7280
32 1 3.6555 -1.1120 -3.2137
33 1 4.4640 -0.9672 -5.5248
34 1 2.8304 -1.3177 -6.1344
35 1 4.2958 1.1657 -6.7164
36 1 1.8980 -0.1288 -7.8248
37 1 2.7564 1.2103 -8.6206
38 1 0.8472 2.0731 -7.3090
39 1 2.3823 2.6263 -6.5935
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000719971675.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:40
Heat of formation + Delta-G solvation = -87.637159 kcal
Electronic energy + Delta-G solvation = -17496.883507 eV
Core-core repulsion = 14756.902555 eV
Total energy + Delta-G solvation = -2739.980952 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.44397 -38.60023 -35.73729 -34.74401 -32.88916 -30.86255 -29.30678 -28.17745
-25.25774 -24.24761 -22.91959 -22.57185 -21.76560 -18.52882 -18.38385 -17.70621
-16.96969 -16.59651 -16.02506 -15.76946 -15.50573 -15.30323 -15.18189 -14.64687
-14.17605 -13.97105 -13.76989 -13.41062 -13.35070 -13.22969 -12.79502 -12.66587
-12.62006 -12.57184 -12.38277 -12.14954 -11.86504 -11.61483 -11.29858 -11.21884
-10.98445 -10.56295 -10.23866 -9.71092 -8.66501 -8.17921 -6.27097 0.63756
1.39056 1.42690 1.49157 1.50478 2.42175 2.75724 3.14580 3.18867
3.63133 3.80558 3.88288 4.07654 4.11291 4.15139 4.21525 4.38688
4.39545 4.45815 4.49026 4.53166 4.60589 4.72515 4.81472 4.90376
4.95103 4.98860 5.08466 5.16237 5.22533 5.42928 5.51878 5.80101
5.88101 6.23829 6.27928 6.57659 6.85140 7.39868 8.94190
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.026586 B = 0.004372 C = 0.003878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1052.931599 B = 6402.266673 C = 7219.244271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.098 3.902
3 H 0.048 0.952
4 C 0.027 3.973
5 C -0.527 4.527
6 H 0.054 0.946
7 C -0.001 4.001
8 N -0.935 5.935
9 Si 0.963 3.037
10 H -0.266 1.266
11 H -0.282 1.282
12 H -0.269 1.269
13 O -0.394 6.394
14 C 0.062 3.938
15 C -0.090 4.090
16 C -0.066 4.066
17 H 0.093 0.907
18 C 0.069 3.931
19 N -0.692 5.692
20 C 0.060 3.940
21 C -0.112 4.112
22 S -0.309 6.309
23 H 0.070 0.930
24 H 0.064 0.936
25 H 0.051 0.949
26 H 0.012 0.988
27 H -0.007 1.007
28 H 0.263 0.737
29 H 0.038 0.962
30 H 0.051 0.949
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.097 0.903
34 H 0.082 0.918
35 H 0.351 0.649
36 H 0.079 0.921
37 H 0.108 0.892
38 H 0.121 0.879
39 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.696 7.446 -22.382 23.649
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.041 3.959
3 H 0.066 0.934
4 C -0.010 4.010
5 C -0.565 4.565
6 H 0.072 0.928
7 C -0.198 4.198
8 N -0.576 5.576
9 Si 0.788 3.212
10 H -0.191 1.191
11 H -0.207 1.207
12 H -0.194 1.194
13 O -0.314 6.314
14 C -0.015 4.015
15 C -0.129 4.129
16 C -0.197 4.197
17 H 0.111 0.889
18 C -0.063 4.063
19 N -0.321 5.321
20 C -0.071 4.071
21 C -0.262 4.262
22 S -0.084 6.084
23 H 0.089 0.911
24 H 0.083 0.917
25 H 0.071 0.929
26 H 0.031 0.969
27 H 0.011 0.989
28 H 0.072 0.928
29 H 0.057 0.943
30 H 0.069 0.931
31 H 0.093 0.907
32 H 0.104 0.896
33 H 0.115 0.885
34 H 0.101 0.899
35 H 0.170 0.830
36 H 0.098 0.902
37 H 0.126 0.874
38 H 0.139 0.861
39 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -2.530 6.588 -22.176 23.272
hybrid contribution 1.323 0.903 0.808 1.794
sum -1.207 7.491 -21.368 22.675
Atomic orbital electron populations
1.22213 0.95454 1.02081 1.02211 1.22129 0.93096 0.95046 0.85654
0.93397 1.19118 0.95607 0.94764 0.91528 1.21453 0.93210 1.34159
1.07695 0.92768 1.25933 1.03737 0.94891 0.95255 1.70082 1.37680
1.37045 1.12799 0.85531 0.79364 0.78713 0.77627 1.19056 1.20694
1.19427 1.87918 1.87031 1.35999 1.20408 1.22543 0.99202 0.93071
0.86656 1.21217 1.02955 0.97653 0.91077 1.23947 0.95289 1.01348
0.99087 0.88903 1.22255 1.01880 0.95215 0.86947 1.60090 1.20029
1.23269 1.28694 1.22277 0.89743 0.97748 0.97301 1.24364 1.06098
1.01214 0.94502 1.87502 1.18771 1.72115 1.29968 0.91139 0.91714
0.92942 0.96945 0.98886 0.92789 0.94333 0.93091 0.90707 0.89632
0.88515 0.89904 0.82987 0.90216 0.87353 0.86087 0.89055
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.93 9.53 71.98 0.69 -5.24 16
2 C 0.10 4.36 2.67 30.60 0.08 4.44 16
3 H 0.05 2.07 7.79 -2.39 -0.02 2.05 16
4 C 0.03 1.48 4.68 29.85 0.14 1.62 16
5 C -0.53 -31.04 8.88 25.60 0.23 -30.81 16
6 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16
7 C 0.00 -0.06 5.46 84.66 0.46 0.41 16
8 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16
9 Si 0.96 45.25 29.54 68.60 2.03 47.27 16
10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16
12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
13 O -0.39 -17.23 9.74 -148.98 -1.45 -18.68 16
14 C 0.06 2.10 5.58 71.98 0.40 2.50 16
15 C -0.09 -2.46 5.07 30.60 0.16 -2.31 16
16 C -0.07 -1.38 2.68 30.68 0.08 -1.30 16
17 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
18 C 0.07 1.18 5.71 86.47 0.49 1.68 16
19 N -0.69 -9.94 6.70 -515.03 -3.45 -13.39 16
20 C 0.06 0.73 6.42 86.47 0.56 1.28 16
21 C -0.11 -1.51 6.59 72.07 0.47 -1.04 16
22 S -0.31 -6.78 20.60 -56.49 -1.16 -7.95 16
23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
24 H 0.06 2.05 7.87 -2.39 -0.02 2.03 16
25 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16
26 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16
27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16
28 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16
29 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16
30 H 0.05 1.65 6.88 -2.39 -0.02 1.64 16
31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16
33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.08 1.53 7.91 -2.39 -0.02 1.51 16
35 H 0.35 4.35 8.65 -89.69 -0.78 3.57 16
36 H 0.08 1.10 7.92 -2.39 -0.02 1.08 16
37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16
38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16
39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
Total: -1.00 -67.90 325.15 0.23 -67.67
By element:
Atomic # 1 Polarization: 11.49 SS G_CDS: 0.23 Total: 11.72 kcal
Atomic # 6 Polarization: -32.53 SS G_CDS: 3.76 Total: -28.77 kcal
Atomic # 7 Polarization: -68.10 SS G_CDS: -3.17 Total: -71.26 kcal
Atomic # 8 Polarization: -17.23 SS G_CDS: -1.45 Total: -18.68 kcal
Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal
Atomic # 16 Polarization: -6.78 SS G_CDS: -1.16 Total: -7.95 kcal
Total: -67.90 0.23 -67.67 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719971675.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.967 kcal
(2) G-P(sol) polarization free energy of solvation -67.902 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds