Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46539 * 2 1 4 4 C 1.53001 * 109.47026 * 119.99899 * 2 1 3 5 5 C 1.50701 * 109.46991 * 185.00159 * 4 2 1 6 6 H 1.07997 * 119.99689 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99897 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99782 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 119.99922 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47271 * 59.99845 * 9 7 5 11 11 H 1.48497 * 109.47255 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47374 * 300.00108 * 9 7 5 13 13 O 1.42899 * 109.46946 * 239.99799 * 2 1 3 14 14 C 1.42905 * 113.99785 * 90.00357 * 13 2 1 15 15 C 1.52999 * 109.46735 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.63003 * 55.39185 * 16 15 14 18 18 C 1.53254 * 109.62670 * 175.98552 * 16 15 14 19 19 N 1.46468 * 109.85681 * 181.70901 * 18 16 15 20 20 C 1.46468 * 112.56014 * 287.34363 * 19 18 16 21 21 C 1.53251 * 109.86071 * 72.65564 * 20 19 18 22 22 S 1.81899 * 109.62961 * 294.99569 * 16 15 14 23 23 H 1.09001 * 109.47258 * 299.99773 * 1 2 3 24 24 H 1.08997 * 109.47405 * 60.00136 * 1 2 3 25 25 H 1.09005 * 109.46980 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 305.00195 * 4 2 1 27 27 H 1.09001 * 109.47321 * 65.00174 * 4 2 1 28 28 H 0.97000 * 119.99929 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.47057 * 59.99308 * 14 13 2 30 30 H 1.09000 * 109.46838 * 299.99546 * 14 13 2 31 31 H 1.08993 * 109.47839 * 59.99877 * 15 14 13 32 32 H 1.09000 * 109.47160 * 299.99439 * 15 14 13 33 33 H 1.09003 * 109.40142 * 301.82201 * 18 16 15 34 34 H 1.08989 * 109.40658 * 61.58974 * 18 16 15 35 35 H 1.00902 * 110.99952 * 52.45054 * 19 18 16 36 36 H 1.09003 * 109.40228 * 312.53769 * 20 19 18 37 37 H 1.09001 * 109.40874 * 192.77989 * 20 19 18 38 38 H 1.09000 * 109.63068 * 178.29813 * 21 20 19 39 39 H 1.08995 * 109.79517 * 57.80137 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1926 2.3584 8 7 3.5762 -1.8360 3.3006 9 14 6.0919 -1.0601 2.4375 10 1 6.4843 0.3710 2.4967 11 1 6.5868 -1.7591 3.6506 12 1 6.6846 -1.6862 1.2283 13 8 2.0063 -0.6737 -1.1668 14 6 2.2001 0.1829 -2.2941 15 6 2.7091 -0.6407 -3.4788 16 6 2.9159 0.2764 -4.6860 17 1 3.5841 1.0937 -4.4147 18 6 3.5200 -0.5253 -5.8439 19 7 3.7580 0.3566 -6.9889 20 6 2.5181 0.7525 -7.6605 21 6 1.7540 1.7582 -6.7925 22 16 1.3139 0.9495 -5.2236 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6053 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 4.0606 -2.2427 4.0360 29 1 2.9319 0.9513 -2.0450 30 1 1.2538 0.6546 -2.5588 31 1 1.9776 -1.4093 -3.7280 32 1 3.6555 -1.1120 -3.2137 33 1 4.4640 -0.9672 -5.5248 34 1 2.8304 -1.3177 -6.1344 35 1 4.2958 1.1657 -6.7164 36 1 1.8980 -0.1288 -7.8248 37 1 2.7564 1.2103 -8.6206 38 1 0.8472 2.0731 -7.3090 39 1 2.3823 2.6263 -6.5935 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719971675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = -87.637159 kcal Electronic energy + Delta-G solvation = -17496.883507 eV Core-core repulsion = 14756.902555 eV Total energy + Delta-G solvation = -2739.980952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.44397 -38.60023 -35.73729 -34.74401 -32.88916 -30.86255 -29.30678 -28.17745 -25.25774 -24.24761 -22.91959 -22.57185 -21.76560 -18.52882 -18.38385 -17.70621 -16.96969 -16.59651 -16.02506 -15.76946 -15.50573 -15.30323 -15.18189 -14.64687 -14.17605 -13.97105 -13.76989 -13.41062 -13.35070 -13.22969 -12.79502 -12.66587 -12.62006 -12.57184 -12.38277 -12.14954 -11.86504 -11.61483 -11.29858 -11.21884 -10.98445 -10.56295 -10.23866 -9.71092 -8.66501 -8.17921 -6.27097 0.63756 1.39056 1.42690 1.49157 1.50478 2.42175 2.75724 3.14580 3.18867 3.63133 3.80558 3.88288 4.07654 4.11291 4.15139 4.21525 4.38688 4.39545 4.45815 4.49026 4.53166 4.60589 4.72515 4.81472 4.90376 4.95103 4.98860 5.08466 5.16237 5.22533 5.42928 5.51878 5.80101 5.88101 6.23829 6.27928 6.57659 6.85140 7.39868 8.94190 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.026586 B = 0.004372 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.931599 B = 6402.266673 C = 7219.244271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 H 0.048 0.952 4 C 0.027 3.973 5 C -0.527 4.527 6 H 0.054 0.946 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.269 1.269 13 O -0.394 6.394 14 C 0.062 3.938 15 C -0.090 4.090 16 C -0.066 4.066 17 H 0.093 0.907 18 C 0.069 3.931 19 N -0.692 5.692 20 C 0.060 3.940 21 C -0.112 4.112 22 S -0.309 6.309 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.012 0.988 27 H -0.007 1.007 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.351 0.649 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 7.446 -22.382 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.066 0.934 4 C -0.010 4.010 5 C -0.565 4.565 6 H 0.072 0.928 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.194 1.194 13 O -0.314 6.314 14 C -0.015 4.015 15 C -0.129 4.129 16 C -0.197 4.197 17 H 0.111 0.889 18 C -0.063 4.063 19 N -0.321 5.321 20 C -0.071 4.071 21 C -0.262 4.262 22 S -0.084 6.084 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.011 0.989 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.170 0.830 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.530 6.588 -22.176 23.272 hybrid contribution 1.323 0.903 0.808 1.794 sum -1.207 7.491 -21.368 22.675 Atomic orbital electron populations 1.22213 0.95454 1.02081 1.02211 1.22129 0.93096 0.95046 0.85654 0.93397 1.19118 0.95607 0.94764 0.91528 1.21453 0.93210 1.34159 1.07695 0.92768 1.25933 1.03737 0.94891 0.95255 1.70082 1.37680 1.37045 1.12799 0.85531 0.79364 0.78713 0.77627 1.19056 1.20694 1.19427 1.87918 1.87031 1.35999 1.20408 1.22543 0.99202 0.93071 0.86656 1.21217 1.02955 0.97653 0.91077 1.23947 0.95289 1.01348 0.99087 0.88903 1.22255 1.01880 0.95215 0.86947 1.60090 1.20029 1.23269 1.28694 1.22277 0.89743 0.97748 0.97301 1.24364 1.06098 1.01214 0.94502 1.87502 1.18771 1.72115 1.29968 0.91139 0.91714 0.92942 0.96945 0.98886 0.92789 0.94333 0.93091 0.90707 0.89632 0.88515 0.89904 0.82987 0.90216 0.87353 0.86087 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.93 9.53 71.98 0.69 -5.24 16 2 C 0.10 4.36 2.67 30.60 0.08 4.44 16 3 H 0.05 2.07 7.79 -2.39 -0.02 2.05 16 4 C 0.03 1.48 4.68 29.85 0.14 1.62 16 5 C -0.53 -31.04 8.88 25.60 0.23 -30.81 16 6 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 8 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 O -0.39 -17.23 9.74 -148.98 -1.45 -18.68 16 14 C 0.06 2.10 5.58 71.98 0.40 2.50 16 15 C -0.09 -2.46 5.07 30.60 0.16 -2.31 16 16 C -0.07 -1.38 2.68 30.68 0.08 -1.30 16 17 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 18 C 0.07 1.18 5.71 86.47 0.49 1.68 16 19 N -0.69 -9.94 6.70 -515.03 -3.45 -13.39 16 20 C 0.06 0.73 6.42 86.47 0.56 1.28 16 21 C -0.11 -1.51 6.59 72.07 0.47 -1.04 16 22 S -0.31 -6.78 20.60 -56.49 -1.16 -7.95 16 23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.06 2.05 7.87 -2.39 -0.02 2.03 16 25 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.05 1.65 6.88 -2.39 -0.02 1.64 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.53 7.91 -2.39 -0.02 1.51 16 35 H 0.35 4.35 8.65 -89.69 -0.78 3.57 16 36 H 0.08 1.10 7.92 -2.39 -0.02 1.08 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -67.90 325.15 0.23 -67.67 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.23 Total: 11.72 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 3.76 Total: -28.77 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -3.17 Total: -71.26 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.45 Total: -18.68 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -1.16 Total: -7.95 kcal Total: -67.90 0.23 -67.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719971675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.967 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds