Wall clock time and date at job start Mon Mar 30 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09003 * 110.28592 * 27.87168 * 3 2 1 5 5 C 1.54377 * 110.32156 * 265.63906 * 3 2 1 6 6 N 1.48561 * 104.59459 * 217.24756 * 5 3 2 7 7 C 1.48566 * 104.21934 * 39.48610 * 6 5 3 8 8 H 1.09001 * 110.40876 * 79.29400 * 7 6 5 9 9 C 1.52995 * 110.41082 * 201.73860 * 7 6 5 10 10 O 1.42902 * 109.47158 * 290.17236 * 9 7 6 11 11 C 1.42904 * 114.00106 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46815 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47041 * 65.00521 * 12 11 10 14 14 C 1.42897 * 113.99888 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47310 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00249 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00359 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00469 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99933 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47489 * 89.99617 * 19 17 15 21 21 H 1.48503 * 109.47285 * 209.99647 * 19 17 15 22 22 H 1.48506 * 109.47201 * 329.99673 * 19 17 15 23 23 C 1.54251 * 110.32262 * 150.00165 * 3 2 1 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 27 27 H 1.08999 * 110.41586 * 336.02966 * 5 3 2 28 28 H 1.09005 * 110.41510 * 98.47254 * 5 3 2 29 29 H 1.00901 * 111.00447 * 279.93288 * 6 5 3 30 30 H 1.09003 * 109.47415 * 50.17073 * 9 7 6 31 31 H 1.08997 * 109.47038 * 170.17198 * 9 7 6 32 32 H 1.08998 * 109.46768 * 300.00085 * 11 10 9 33 33 H 1.08997 * 109.47083 * 59.99648 * 11 10 9 34 34 H 1.09005 * 109.46387 * 184.99798 * 12 11 10 35 35 H 1.08996 * 109.47450 * 304.99301 * 12 11 10 36 36 H 1.08997 * 109.47521 * 299.99484 * 14 13 12 37 37 H 1.09001 * 109.47428 * 59.99650 * 14 13 12 38 38 H 0.96993 * 120.00207 * 180.02562 * 18 17 15 39 39 H 1.09006 * 110.32386 * 237.79072 * 23 3 2 40 40 H 1.09001 * 110.32935 * 359.90109 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3384 2.0183 0.4780 5 6 2.3290 1.7504 -1.4435 6 7 3.6078 2.4981 -1.3311 7 6 4.3999 1.7199 -0.3441 8 1 4.8470 0.8466 -0.8193 9 6 5.4824 2.5998 0.2842 10 8 6.4832 2.8942 -0.6924 11 6 7.5470 3.7148 -0.2054 12 6 8.5547 3.9635 -1.3295 13 8 7.9334 4.7259 -2.3661 14 6 8.7935 5.0154 -3.4699 15 6 8.0388 5.8182 -4.4979 16 1 7.0056 6.0816 -4.3254 17 6 8.6673 6.2176 -5.6582 18 7 8.0088 6.9187 -6.5551 19 14 10.4544 5.7628 -5.9564 20 1 10.5221 4.4583 -6.6628 21 1 11.0996 6.8102 -6.7883 22 1 11.1624 5.6584 -4.6552 23 6 3.3726 1.2853 0.7232 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 2.4519 0.8820 -2.0907 28 1 1.5409 2.4004 -1.8237 29 1 3.4488 3.4397 -1.0052 30 1 5.0354 3.5290 0.6377 31 1 5.9371 2.0731 1.1231 32 1 7.1431 4.6670 0.1383 33 1 8.0445 3.2108 0.6232 34 1 9.4093 4.5140 -0.9360 35 1 8.8921 3.0088 -1.7329 36 1 9.6528 5.5878 -3.1207 37 1 9.1362 4.0826 -3.9179 38 1 8.4509 7.1993 -7.3716 39 1 3.3701 1.9896 1.5551 40 1 3.5972 0.2800 1.0798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724350840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:53 Heat of formation + Delta-G solvation = -131.556980 kcal Electronic energy + Delta-G solvation = -19335.284534 eV Core-core repulsion = 16150.646205 eV Total energy + Delta-G solvation = -3184.638330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68026 -37.98981 -36.85046 -36.06080 -32.59773 -30.84815 -29.85435 -29.09209 -27.33668 -26.54861 -24.78220 -22.15118 -21.72754 -21.68184 -20.52558 -17.28141 -16.85636 -16.67592 -16.30945 -16.10610 -15.65875 -15.03938 -14.96439 -14.52855 -14.40331 -13.89152 -13.61130 -13.58019 -13.08508 -12.61358 -12.31081 -12.02968 -12.00885 -11.79443 -11.71461 -11.40551 -11.01901 -10.92608 -10.84700 -10.70061 -10.38187 -10.07714 -9.81461 -9.42822 -9.09536 -8.77738 -8.59765 -8.39110 -6.04161 -4.02365 3.30347 3.35504 3.36515 3.38100 3.74090 4.12769 4.39303 4.41943 4.60990 4.69605 4.75705 4.95277 5.00542 5.04762 5.14509 5.18473 5.27026 5.27627 5.32090 5.37806 5.47216 5.54954 5.57137 5.62628 5.83676 5.88938 5.93979 5.99196 6.16838 6.56303 6.67146 6.90816 7.07619 7.29873 7.43167 7.67382 8.10215 8.75088 9.08951 9.55387 11.09082 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.003435 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.768751 B = 8149.125147 C = 8887.595170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.053 3.947 4 H 0.066 0.934 5 C 0.019 3.981 6 N -0.644 5.644 7 C 0.077 3.923 8 H 0.100 0.900 9 C 0.065 3.935 10 O -0.360 6.360 11 C 0.068 3.932 12 C 0.060 3.940 13 O -0.371 6.371 14 C 0.168 3.832 15 C -0.515 4.515 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.876 3.124 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.267 1.267 23 C -0.151 4.151 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.340 0.660 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.001 0.999 37 H -0.001 1.001 38 H 0.266 0.734 39 H 0.076 0.924 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 -12.166 17.993 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.007 4.007 4 H 0.084 0.916 5 C -0.111 4.111 6 N -0.273 5.273 7 C -0.033 4.033 8 H 0.118 0.882 9 C -0.013 4.013 10 O -0.279 6.279 11 C -0.009 4.009 12 C -0.018 4.018 13 O -0.290 6.290 14 C 0.093 3.907 15 C -0.553 4.553 16 H 0.101 0.899 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.190 4.190 24 H 0.104 0.896 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.157 0.843 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.019 0.981 37 H 0.017 0.983 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.265 -12.469 16.976 23.432 hybrid contribution 0.521 0.249 0.911 1.078 sum -9.745 -12.219 17.887 23.754 Atomic orbital electron populations 1.22795 0.81121 1.02774 0.99967 1.87946 1.19601 1.27295 1.95014 1.23684 0.94721 0.84926 0.97349 0.91580 1.23589 0.92197 0.99651 0.95697 1.63293 1.12769 1.04759 1.46443 1.22596 0.92646 0.97354 0.90741 0.88196 1.22540 0.89783 0.97598 0.91338 1.88129 1.33714 1.70042 1.35973 1.22540 0.88663 0.94117 0.95590 1.22316 0.93821 0.95783 0.89843 1.87990 1.39075 1.72246 1.29680 1.20599 0.90672 0.94518 0.84924 1.20906 1.00681 1.32853 1.00840 0.89887 1.24769 0.97990 0.94786 0.95506 1.69880 1.36861 1.37589 1.09243 0.86849 0.85483 0.78672 0.78711 1.19914 1.20862 1.19158 1.22947 0.93884 1.03588 0.98623 0.89625 0.93858 0.94185 0.89142 0.90553 0.84339 0.93474 0.93076 0.92748 0.92911 0.93009 0.93539 0.98122 0.98340 0.92452 0.90576 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.38 -3.91 10.31 -35.23 -0.36 -4.27 16 3 C 0.05 0.50 3.54 -25.35 -0.09 0.41 16 4 H 0.07 0.53 7.81 -51.93 -0.41 0.12 16 5 C 0.02 0.21 7.21 -2.18 -0.02 0.19 16 6 N -0.64 -8.62 7.42 -102.74 -0.76 -9.38 16 7 C 0.08 0.91 3.51 -66.07 -0.23 0.68 16 8 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 9 C 0.06 0.79 5.34 37.15 0.20 0.98 16 10 O -0.36 -6.06 10.31 -40.09 -0.41 -6.47 16 11 C 0.07 1.03 6.32 37.16 0.23 1.26 16 12 C 0.06 1.11 6.32 37.16 0.23 1.34 16 13 O -0.37 -9.20 10.29 -40.09 -0.41 -9.61 16 14 C 0.17 4.48 4.76 36.00 0.17 4.65 16 15 C -0.51 -15.93 9.99 -34.44 -0.34 -16.27 16 16 H 0.08 2.81 8.06 -52.48 -0.42 2.39 16 17 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 18 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 19 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 C -0.15 -1.40 6.36 -25.35 -0.16 -1.56 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.24 8.10 -51.93 -0.42 -0.18 16 27 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.34 4.25 8.54 -39.29 -0.34 3.91 16 30 H 0.05 0.52 8.00 -51.93 -0.42 0.11 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 37 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 38 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 40 H 0.09 0.81 7.98 -51.93 -0.41 0.40 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -35.10 330.96 -6.84 -41.95 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.98 Total: -1.95 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 1.00 Total: -4.94 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.01 Total: -37.00 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.19 Total: -20.36 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.10 -6.84 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724350840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.611 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds