Wall clock time and date at job start Mon Mar 30 2020 05:51:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42901 * 114.00267 * 2 1
4 4 H 1.09003 * 110.28592 * 27.87168 * 3 2 1
5 5 C 1.54377 * 110.32156 * 265.63906 * 3 2 1
6 6 N 1.48561 * 104.59459 * 217.24756 * 5 3 2
7 7 C 1.48566 * 104.21934 * 39.48610 * 6 5 3
8 8 H 1.09001 * 110.40876 * 79.29400 * 7 6 5
9 9 C 1.52995 * 110.41082 * 201.73860 * 7 6 5
10 10 O 1.42902 * 109.47158 * 290.17236 * 9 7 6
11 11 C 1.42904 * 114.00106 * 180.02562 * 10 9 7
12 12 C 1.53000 * 109.46815 * 179.97438 * 11 10 9
13 13 O 1.42896 * 109.47041 * 65.00521 * 12 11 10
14 14 C 1.42897 * 113.99888 * 179.97438 * 13 12 11
15 15 C 1.50698 * 109.47310 * 179.97438 * 14 13 12
16 16 H 1.08005 * 120.00249 * 0.02562 * 15 14 13
17 17 C 1.37875 * 120.00359 * 179.97438 * 15 14 13
18 18 N 1.31519 * 120.00469 * 180.02562 * 17 15 14
19 19 Si 1.86800 * 119.99933 * 0.02562 * 17 15 14
20 20 H 1.48505 * 109.47489 * 89.99617 * 19 17 15
21 21 H 1.48503 * 109.47285 * 209.99647 * 19 17 15
22 22 H 1.48506 * 109.47201 * 329.99673 * 19 17 15
23 23 C 1.54251 * 110.32262 * 150.00165 * 3 2 1
24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3
26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3
27 27 H 1.08999 * 110.41586 * 336.02966 * 5 3 2
28 28 H 1.09005 * 110.41510 * 98.47254 * 5 3 2
29 29 H 1.00901 * 111.00447 * 279.93288 * 6 5 3
30 30 H 1.09003 * 109.47415 * 50.17073 * 9 7 6
31 31 H 1.08997 * 109.47038 * 170.17198 * 9 7 6
32 32 H 1.08998 * 109.46768 * 300.00085 * 11 10 9
33 33 H 1.08997 * 109.47083 * 59.99648 * 11 10 9
34 34 H 1.09005 * 109.46387 * 184.99798 * 12 11 10
35 35 H 1.08996 * 109.47450 * 304.99301 * 12 11 10
36 36 H 1.08997 * 109.47521 * 299.99484 * 14 13 12
37 37 H 1.09001 * 109.47428 * 59.99650 * 14 13 12
38 38 H 0.96993 * 120.00207 * 180.02562 * 18 17 15
39 39 H 1.09006 * 110.32386 * 237.79072 * 23 3 2
40 40 H 1.09001 * 110.32935 * 359.90109 * 23 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3384 2.0183 0.4780
5 6 2.3290 1.7504 -1.4435
6 7 3.6078 2.4981 -1.3311
7 6 4.3999 1.7199 -0.3441
8 1 4.8470 0.8466 -0.8193
9 6 5.4824 2.5998 0.2842
10 8 6.4832 2.8942 -0.6924
11 6 7.5470 3.7148 -0.2054
12 6 8.5547 3.9635 -1.3295
13 8 7.9334 4.7259 -2.3661
14 6 8.7935 5.0154 -3.4699
15 6 8.0388 5.8182 -4.4979
16 1 7.0056 6.0816 -4.3254
17 6 8.6673 6.2176 -5.6582
18 7 8.0088 6.9187 -6.5551
19 14 10.4544 5.7628 -5.9564
20 1 10.5221 4.4583 -6.6628
21 1 11.0996 6.8102 -6.7883
22 1 11.1624 5.6584 -4.6552
23 6 3.3726 1.2853 0.7232
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3633 0.5139 0.8900
27 1 2.4519 0.8820 -2.0907
28 1 1.5409 2.4004 -1.8237
29 1 3.4488 3.4397 -1.0052
30 1 5.0354 3.5290 0.6377
31 1 5.9371 2.0731 1.1231
32 1 7.1431 4.6670 0.1383
33 1 8.0445 3.2108 0.6232
34 1 9.4093 4.5140 -0.9360
35 1 8.8921 3.0088 -1.7329
36 1 9.6528 5.5878 -3.1207
37 1 9.1362 4.0826 -3.9179
38 1 8.4509 7.1993 -7.3716
39 1 3.3701 1.9896 1.5551
40 1 3.5972 0.2800 1.0798
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724350840.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:51:53
Heat of formation + Delta-G solvation = -131.556980 kcal
Electronic energy + Delta-G solvation = -19335.284534 eV
Core-core repulsion = 16150.646205 eV
Total energy + Delta-G solvation = -3184.638330 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.68026 -37.98981 -36.85046 -36.06080 -32.59773 -30.84815 -29.85435 -29.09209
-27.33668 -26.54861 -24.78220 -22.15118 -21.72754 -21.68184 -20.52558 -17.28141
-16.85636 -16.67592 -16.30945 -16.10610 -15.65875 -15.03938 -14.96439 -14.52855
-14.40331 -13.89152 -13.61130 -13.58019 -13.08508 -12.61358 -12.31081 -12.02968
-12.00885 -11.79443 -11.71461 -11.40551 -11.01901 -10.92608 -10.84700 -10.70061
-10.38187 -10.07714 -9.81461 -9.42822 -9.09536 -8.77738 -8.59765 -8.39110
-6.04161 -4.02365 3.30347 3.35504 3.36515 3.38100 3.74090 4.12769
4.39303 4.41943 4.60990 4.69605 4.75705 4.95277 5.00542 5.04762
5.14509 5.18473 5.27026 5.27627 5.32090 5.37806 5.47216 5.54954
5.57137 5.62628 5.83676 5.88938 5.93979 5.99196 6.16838 6.56303
6.67146 6.90816 7.07619 7.29873 7.43167 7.67382 8.10215 8.75088
9.08951 9.55387 11.09082
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.028426 B = 0.003435 C = 0.003150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.768751 B = 8149.125147 C = 8887.595170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.381 6.381
3 C 0.053 3.947
4 H 0.066 0.934
5 C 0.019 3.981
6 N -0.644 5.644
7 C 0.077 3.923
8 H 0.100 0.900
9 C 0.065 3.935
10 O -0.360 6.360
11 C 0.068 3.932
12 C 0.060 3.940
13 O -0.371 6.371
14 C 0.168 3.832
15 C -0.515 4.515
16 H 0.083 0.917
17 C 0.071 3.929
18 N -0.897 5.897
19 Si 0.876 3.124
20 H -0.274 1.274
21 H -0.283 1.283
22 H -0.267 1.267
23 C -0.151 4.151
24 H 0.085 0.915
25 H 0.043 0.957
26 H 0.040 0.960
27 H 0.090 0.910
28 H 0.076 0.924
29 H 0.340 0.660
30 H 0.047 0.953
31 H 0.051 0.949
32 H 0.054 0.946
33 H 0.053 0.947
34 H 0.052 0.948
35 H 0.046 0.954
36 H 0.001 0.999
37 H -0.001 1.001
38 H 0.266 0.734
39 H 0.076 0.924
40 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.532 -12.166 17.993 24.139
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.299 6.299
3 C -0.007 4.007
4 H 0.084 0.916
5 C -0.111 4.111
6 N -0.273 5.273
7 C -0.033 4.033
8 H 0.118 0.882
9 C -0.013 4.013
10 O -0.279 6.279
11 C -0.009 4.009
12 C -0.018 4.018
13 O -0.290 6.290
14 C 0.093 3.907
15 C -0.553 4.553
16 H 0.101 0.899
17 C -0.131 4.131
18 N -0.536 5.536
19 Si 0.703 3.297
20 H -0.199 1.199
21 H -0.209 1.209
22 H -0.192 1.192
23 C -0.190 4.190
24 H 0.104 0.896
25 H 0.061 0.939
26 H 0.058 0.942
27 H 0.109 0.891
28 H 0.094 0.906
29 H 0.157 0.843
30 H 0.065 0.935
31 H 0.069 0.931
32 H 0.073 0.927
33 H 0.071 0.929
34 H 0.070 0.930
35 H 0.065 0.935
36 H 0.019 0.981
37 H 0.017 0.983
38 H 0.075 0.925
39 H 0.094 0.906
40 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -10.265 -12.469 16.976 23.432
hybrid contribution 0.521 0.249 0.911 1.078
sum -9.745 -12.219 17.887 23.754
Atomic orbital electron populations
1.22795 0.81121 1.02774 0.99967 1.87946 1.19601 1.27295 1.95014
1.23684 0.94721 0.84926 0.97349 0.91580 1.23589 0.92197 0.99651
0.95697 1.63293 1.12769 1.04759 1.46443 1.22596 0.92646 0.97354
0.90741 0.88196 1.22540 0.89783 0.97598 0.91338 1.88129 1.33714
1.70042 1.35973 1.22540 0.88663 0.94117 0.95590 1.22316 0.93821
0.95783 0.89843 1.87990 1.39075 1.72246 1.29680 1.20599 0.90672
0.94518 0.84924 1.20906 1.00681 1.32853 1.00840 0.89887 1.24769
0.97990 0.94786 0.95506 1.69880 1.36861 1.37589 1.09243 0.86849
0.85483 0.78672 0.78711 1.19914 1.20862 1.19158 1.22947 0.93884
1.03588 0.98623 0.89625 0.93858 0.94185 0.89142 0.90553 0.84339
0.93474 0.93076 0.92748 0.92911 0.93009 0.93539 0.98122 0.98340
0.92452 0.90576 0.89371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 10.85 101.05 1.10 1.31 16
2 O -0.38 -3.91 10.31 -35.23 -0.36 -4.27 16
3 C 0.05 0.50 3.54 -25.35 -0.09 0.41 16
4 H 0.07 0.53 7.81 -51.93 -0.41 0.12 16
5 C 0.02 0.21 7.21 -2.18 -0.02 0.19 16
6 N -0.64 -8.62 7.42 -102.74 -0.76 -9.38 16
7 C 0.08 0.91 3.51 -66.07 -0.23 0.68 16
8 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16
9 C 0.06 0.79 5.34 37.15 0.20 0.98 16
10 O -0.36 -6.06 10.31 -40.09 -0.41 -6.47 16
11 C 0.07 1.03 6.32 37.16 0.23 1.26 16
12 C 0.06 1.11 6.32 37.16 0.23 1.34 16
13 O -0.37 -9.20 10.29 -40.09 -0.41 -9.61 16
14 C 0.17 4.48 4.76 36.00 0.17 4.65 16
15 C -0.51 -15.93 9.99 -34.44 -0.34 -16.27 16
16 H 0.08 2.81 8.06 -52.48 -0.42 2.39 16
17 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16
18 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16
19 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16
20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16
23 C -0.15 -1.40 6.36 -25.35 -0.16 -1.56 16
24 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16
25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
26 H 0.04 0.24 8.10 -51.93 -0.42 -0.18 16
27 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16
28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.34 4.25 8.54 -39.29 -0.34 3.91 16
30 H 0.05 0.52 8.00 -51.93 -0.42 0.11 16
31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16
37 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16
38 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16
39 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16
40 H 0.09 0.81 7.98 -51.93 -0.41 0.40 16
LS Contribution 330.96 15.07 4.99 4.99
Total: -1.00 -35.10 330.96 -6.84 -41.95
By element:
Atomic # 1 Polarization: 5.04 SS G_CDS: -6.98 Total: -1.95 kcal
Atomic # 6 Polarization: -5.94 SS G_CDS: 1.00 Total: -4.94 kcal
Atomic # 7 Polarization: -37.01 SS G_CDS: 0.01 Total: -37.00 kcal
Atomic # 8 Polarization: -19.17 SS G_CDS: -1.19 Total: -20.36 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -35.10 -6.84 -41.95 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724350840.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -89.611 kcal
(2) G-P(sol) polarization free energy of solvation -35.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.557 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds