Wall clock time and date at job start Mon Mar 30 2020 05:51:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42901 * 114.00267 * 2 1
4 4 H 1.09003 * 110.28592 * 27.87168 * 3 2 1
5 5 C 1.54377 * 110.32156 * 265.63906 * 3 2 1
6 6 N 1.48561 * 104.59459 * 217.24756 * 5 3 2
7 7 C 1.48566 * 104.21934 * 39.48610 * 6 5 3
8 8 H 1.09001 * 110.40876 * 79.29400 * 7 6 5
9 9 C 1.52995 * 110.41082 * 201.73860 * 7 6 5
10 10 O 1.42902 * 109.47158 * 290.17236 * 9 7 6
11 11 C 1.42904 * 114.00106 * 180.02562 * 10 9 7
12 12 C 1.53000 * 109.46815 * 179.97438 * 11 10 9
13 13 O 1.42896 * 109.47041 * 65.00521 * 12 11 10
14 14 C 1.42897 * 113.99888 * 179.97438 * 13 12 11
15 15 C 1.50698 * 109.47310 * 179.97438 * 14 13 12
16 16 H 1.08005 * 120.00249 * 0.02562 * 15 14 13
17 17 C 1.37875 * 120.00359 * 179.97438 * 15 14 13
18 18 N 1.31519 * 120.00469 * 180.02562 * 17 15 14
19 19 Si 1.86800 * 119.99933 * 0.02562 * 17 15 14
20 20 H 1.48505 * 109.47489 * 89.99617 * 19 17 15
21 21 H 1.48503 * 109.47285 * 209.99647 * 19 17 15
22 22 H 1.48506 * 109.47201 * 329.99673 * 19 17 15
23 23 C 1.54251 * 110.32262 * 150.00165 * 3 2 1
24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3
26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3
27 27 H 1.08999 * 110.41586 * 336.02966 * 5 3 2
28 28 H 1.09005 * 110.41510 * 98.47254 * 5 3 2
29 29 H 1.00901 * 111.00447 * 279.93288 * 6 5 3
30 30 H 1.09003 * 109.47415 * 50.17073 * 9 7 6
31 31 H 1.08997 * 109.47038 * 170.17198 * 9 7 6
32 32 H 1.08998 * 109.46768 * 300.00085 * 11 10 9
33 33 H 1.08997 * 109.47083 * 59.99648 * 11 10 9
34 34 H 1.09005 * 109.46387 * 184.99798 * 12 11 10
35 35 H 1.08996 * 109.47450 * 304.99301 * 12 11 10
36 36 H 1.08997 * 109.47521 * 299.99484 * 14 13 12
37 37 H 1.09001 * 109.47428 * 59.99650 * 14 13 12
38 38 H 0.96993 * 120.00207 * 180.02562 * 18 17 15
39 39 H 1.09006 * 110.32386 * 237.79072 * 23 3 2
40 40 H 1.09001 * 110.32935 * 359.90109 * 23 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3384 2.0183 0.4780
5 6 2.3290 1.7504 -1.4435
6 7 3.6078 2.4981 -1.3311
7 6 4.3999 1.7199 -0.3441
8 1 4.8470 0.8466 -0.8193
9 6 5.4824 2.5998 0.2842
10 8 6.4832 2.8942 -0.6924
11 6 7.5470 3.7148 -0.2054
12 6 8.5547 3.9635 -1.3295
13 8 7.9334 4.7259 -2.3661
14 6 8.7935 5.0154 -3.4699
15 6 8.0388 5.8182 -4.4979
16 1 7.0056 6.0816 -4.3254
17 6 8.6673 6.2176 -5.6582
18 7 8.0088 6.9187 -6.5551
19 14 10.4544 5.7628 -5.9564
20 1 10.5221 4.4583 -6.6628
21 1 11.0996 6.8102 -6.7883
22 1 11.1624 5.6584 -4.6552
23 6 3.3726 1.2853 0.7232
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3633 0.5139 0.8900
27 1 2.4519 0.8820 -2.0907
28 1 1.5409 2.4004 -1.8237
29 1 3.4488 3.4397 -1.0052
30 1 5.0354 3.5290 0.6377
31 1 5.9371 2.0731 1.1231
32 1 7.1431 4.6670 0.1383
33 1 8.0445 3.2108 0.6232
34 1 9.4093 4.5140 -0.9360
35 1 8.8921 3.0088 -1.7329
36 1 9.6528 5.5878 -3.1207
37 1 9.1362 4.0826 -3.9179
38 1 8.4509 7.1993 -7.3716
39 1 3.3701 1.9896 1.5551
40 1 3.5972 0.2800 1.0798
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724350840.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:51:53
Heat of formation + Delta-G solvation = -160.417349 kcal
Electronic energy + Delta-G solvation = -19336.536014 eV
Core-core repulsion = 16150.646205 eV
Total energy + Delta-G solvation = -3185.889809 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.52189 -39.20967 -38.21225 -37.19258 -34.86740 -32.04070 -30.88489 -30.31832
-29.17583 -27.17167 -25.71849 -24.01533 -23.37444 -22.56899 -21.36469 -19.06756
-18.17845 -17.67308 -17.62581 -17.16763 -16.81312 -16.45039 -16.11247 -16.01747
-15.67024 -15.17448 -14.76707 -14.63107 -14.41461 -14.04465 -13.66806 -13.39642
-13.17639 -12.84544 -12.75249 -12.60621 -12.55487 -12.25695 -11.95188 -11.88314
-11.79655 -11.60190 -11.35333 -10.92110 -10.80444 -10.51021 -10.34266 -9.52461
-8.36405 -6.44384 1.33406 1.37457 1.48116 2.30490 2.57147 2.85442
2.95807 3.10656 3.26217 3.62210 3.80442 3.91368 4.14188 4.17013
4.28665 4.34090 4.35262 4.43501 4.49941 4.52150 4.53826 4.56119
4.62442 4.65407 4.76154 4.84381 4.85528 4.89038 4.97320 5.01312
5.09747 5.44369 5.68256 5.94833 6.22845 6.34055 6.41757 6.59655
6.77995 7.19934 8.81135
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.028426 B = 0.003435 C = 0.003150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.768751 B = 8149.125147 C = 8887.595170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.402 6.402
3 C 0.058 3.942
4 H 0.086 0.914
5 C 0.019 3.981
6 N -0.677 5.677
7 C 0.075 3.925
8 H 0.077 0.923
9 C 0.063 3.937
10 O -0.401 6.401
11 C 0.070 3.930
12 C 0.046 3.954
13 O -0.404 6.404
14 C 0.179 3.821
15 C -0.546 4.546
16 H 0.027 0.973
17 C 0.011 3.989
18 N -0.943 5.943
19 Si 0.959 3.041
20 H -0.261 1.261
21 H -0.271 1.271
22 H -0.242 1.242
23 C -0.140 4.140
24 H 0.096 0.904
25 H 0.046 0.954
26 H 0.054 0.946
27 H 0.071 0.929
28 H 0.085 0.915
29 H 0.342 0.658
30 H 0.058 0.942
31 H 0.080 0.920
32 H 0.054 0.946
33 H 0.098 0.902
34 H 0.078 0.922
35 H 0.049 0.951
36 H 0.017 0.983
37 H 0.006 0.994
38 H 0.273 0.727
39 H 0.098 0.902
40 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.042 -13.059 19.904 25.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.321 6.321
3 C -0.002 4.002
4 H 0.104 0.896
5 C -0.111 4.111
6 N -0.306 5.306
7 C -0.035 4.035
8 H 0.095 0.905
9 C -0.014 4.014
10 O -0.321 6.321
11 C -0.006 4.006
12 C -0.030 4.030
13 O -0.324 6.324
14 C 0.103 3.897
15 C -0.584 4.584
16 H 0.045 0.955
17 C -0.187 4.187
18 N -0.583 5.583
19 Si 0.780 3.220
20 H -0.186 1.186
21 H -0.196 1.196
22 H -0.166 1.166
23 C -0.179 4.179
24 H 0.114 0.886
25 H 0.065 0.935
26 H 0.072 0.928
27 H 0.089 0.911
28 H 0.104 0.896
29 H 0.159 0.841
30 H 0.076 0.924
31 H 0.098 0.902
32 H 0.072 0.928
33 H 0.115 0.885
34 H 0.096 0.904
35 H 0.067 0.933
36 H 0.035 0.965
37 H 0.024 0.976
38 H 0.082 0.918
39 H 0.117 0.883
40 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -8.799 -13.373 18.922 24.785
hybrid contribution -0.088 0.520 0.325 0.620
sum -8.887 -12.853 19.247 24.792
Atomic orbital electron populations
1.22983 0.79603 1.03849 1.00816 1.87918 1.21386 1.27700 1.95050
1.23634 0.95292 0.85196 0.96049 0.89605 1.23556 0.91697 0.98948
0.96896 1.63250 1.14221 1.05371 1.47757 1.22569 0.93220 0.96417
0.91267 0.90483 1.22748 0.89018 0.98399 0.91195 1.88071 1.35042
1.70412 1.38550 1.22608 0.88201 0.94684 0.95148 1.22765 0.95726
0.95371 0.89149 1.87938 1.40279 1.73534 1.30602 1.20315 0.90400
0.94109 0.84840 1.21181 0.99000 1.34823 1.03412 0.95500 1.25892
1.04261 0.93999 0.94543 1.70040 1.39708 1.38514 1.10023 0.85565
0.77714 0.78921 0.79849 1.18621 1.19566 1.16579 1.22875 0.92690
1.04144 0.98196 0.88564 0.93538 0.92761 0.91058 0.89617 0.84101
0.92431 0.90184 0.92760 0.88465 0.90365 0.93286 0.96517 0.97582
0.91773 0.88325 0.89219
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 10.85 113.37 1.23 1.53 16
2 O -0.40 -7.84 10.31 -148.98 -1.54 -9.37 16
3 C 0.06 1.03 3.54 31.49 0.11 1.14 16
4 H 0.09 1.19 7.81 -2.39 -0.02 1.17 16
5 C 0.02 0.43 7.21 86.45 0.62 1.05 16
6 N -0.68 -18.54 7.42 -478.97 -3.56 -22.09 16
7 C 0.08 1.77 3.51 45.06 0.16 1.93 16
8 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
9 C 0.06 1.43 5.34 71.98 0.38 1.82 16
10 O -0.40 -13.22 10.31 -144.34 -1.49 -14.71 16
11 C 0.07 1.98 6.32 71.98 0.45 2.43 16
12 C 0.05 1.64 6.32 71.98 0.45 2.09 16
13 O -0.40 -20.16 10.29 -144.34 -1.49 -21.64 16
14 C 0.18 9.48 4.76 71.24 0.34 9.81 16
15 C -0.55 -34.94 9.99 25.60 0.26 -34.69 16
16 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16
17 C 0.01 0.65 5.47 84.65 0.46 1.12 16
18 N -0.94 -61.19 13.96 21.45 0.30 -60.89 16
19 Si 0.96 44.67 27.47 68.60 1.88 46.55 16
20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16
21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
22 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16
23 C -0.14 -2.37 6.36 31.49 0.20 -2.17 16
24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16
25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
26 H 0.05 0.53 8.10 -2.38 -0.02 0.51 16
27 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16
28 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16
29 H 0.34 8.72 8.54 -89.69 -0.77 7.95 16
30 H 0.06 1.18 8.00 -2.39 -0.02 1.16 16
31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16
35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
36 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16
37 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16
38 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16
39 H 0.10 1.23 7.86 -2.38 -0.02 1.21 16
40 H 0.09 1.51 7.98 -2.39 -0.02 1.49 16
Total: -1.00 -79.28 330.96 -1.03 -80.30
By element:
Atomic # 1 Polarization: 15.61 SS G_CDS: 0.18 Total: 15.79 kcal
Atomic # 6 Polarization: -18.60 SS G_CDS: 4.67 Total: -13.93 kcal
Atomic # 7 Polarization: -79.73 SS G_CDS: -3.26 Total: -82.99 kcal
Atomic # 8 Polarization: -41.22 SS G_CDS: -4.51 Total: -45.73 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal
Total: -79.28 -1.03 -80.30 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724350840.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -80.113 kcal
(2) G-P(sol) polarization free energy of solvation -79.279 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.392 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) -160.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds