Wall clock time and date at job start Mon Mar 30 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09003 * 110.28592 * 27.87168 * 3 2 1 5 5 C 1.54377 * 110.32156 * 265.63906 * 3 2 1 6 6 N 1.48561 * 104.59459 * 217.24756 * 5 3 2 7 7 C 1.48566 * 104.21934 * 39.48610 * 6 5 3 8 8 H 1.09001 * 110.40876 * 79.29400 * 7 6 5 9 9 C 1.52995 * 110.41082 * 201.73860 * 7 6 5 10 10 O 1.42902 * 109.47158 * 290.17236 * 9 7 6 11 11 C 1.42904 * 114.00106 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46815 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47041 * 65.00521 * 12 11 10 14 14 C 1.42897 * 113.99888 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47310 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00249 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00359 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00469 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99933 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47489 * 89.99617 * 19 17 15 21 21 H 1.48503 * 109.47285 * 209.99647 * 19 17 15 22 22 H 1.48506 * 109.47201 * 329.99673 * 19 17 15 23 23 C 1.54251 * 110.32262 * 150.00165 * 3 2 1 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 27 27 H 1.08999 * 110.41586 * 336.02966 * 5 3 2 28 28 H 1.09005 * 110.41510 * 98.47254 * 5 3 2 29 29 H 1.00901 * 111.00447 * 279.93288 * 6 5 3 30 30 H 1.09003 * 109.47415 * 50.17073 * 9 7 6 31 31 H 1.08997 * 109.47038 * 170.17198 * 9 7 6 32 32 H 1.08998 * 109.46768 * 300.00085 * 11 10 9 33 33 H 1.08997 * 109.47083 * 59.99648 * 11 10 9 34 34 H 1.09005 * 109.46387 * 184.99798 * 12 11 10 35 35 H 1.08996 * 109.47450 * 304.99301 * 12 11 10 36 36 H 1.08997 * 109.47521 * 299.99484 * 14 13 12 37 37 H 1.09001 * 109.47428 * 59.99650 * 14 13 12 38 38 H 0.96993 * 120.00207 * 180.02562 * 18 17 15 39 39 H 1.09006 * 110.32386 * 237.79072 * 23 3 2 40 40 H 1.09001 * 110.32935 * 359.90109 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3384 2.0183 0.4780 5 6 2.3290 1.7504 -1.4435 6 7 3.6078 2.4981 -1.3311 7 6 4.3999 1.7199 -0.3441 8 1 4.8470 0.8466 -0.8193 9 6 5.4824 2.5998 0.2842 10 8 6.4832 2.8942 -0.6924 11 6 7.5470 3.7148 -0.2054 12 6 8.5547 3.9635 -1.3295 13 8 7.9334 4.7259 -2.3661 14 6 8.7935 5.0154 -3.4699 15 6 8.0388 5.8182 -4.4979 16 1 7.0056 6.0816 -4.3254 17 6 8.6673 6.2176 -5.6582 18 7 8.0088 6.9187 -6.5551 19 14 10.4544 5.7628 -5.9564 20 1 10.5221 4.4583 -6.6628 21 1 11.0996 6.8102 -6.7883 22 1 11.1624 5.6584 -4.6552 23 6 3.3726 1.2853 0.7232 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 2.4519 0.8820 -2.0907 28 1 1.5409 2.4004 -1.8237 29 1 3.4488 3.4397 -1.0052 30 1 5.0354 3.5290 0.6377 31 1 5.9371 2.0731 1.1231 32 1 7.1431 4.6670 0.1383 33 1 8.0445 3.2108 0.6232 34 1 9.4093 4.5140 -0.9360 35 1 8.8921 3.0088 -1.7329 36 1 9.6528 5.5878 -3.1207 37 1 9.1362 4.0826 -3.9179 38 1 8.4509 7.1993 -7.3716 39 1 3.3701 1.9896 1.5551 40 1 3.5972 0.2800 1.0798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724350840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:53 Heat of formation + Delta-G solvation = -160.417349 kcal Electronic energy + Delta-G solvation = -19336.536014 eV Core-core repulsion = 16150.646205 eV Total energy + Delta-G solvation = -3185.889809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52189 -39.20967 -38.21225 -37.19258 -34.86740 -32.04070 -30.88489 -30.31832 -29.17583 -27.17167 -25.71849 -24.01533 -23.37444 -22.56899 -21.36469 -19.06756 -18.17845 -17.67308 -17.62581 -17.16763 -16.81312 -16.45039 -16.11247 -16.01747 -15.67024 -15.17448 -14.76707 -14.63107 -14.41461 -14.04465 -13.66806 -13.39642 -13.17639 -12.84544 -12.75249 -12.60621 -12.55487 -12.25695 -11.95188 -11.88314 -11.79655 -11.60190 -11.35333 -10.92110 -10.80444 -10.51021 -10.34266 -9.52461 -8.36405 -6.44384 1.33406 1.37457 1.48116 2.30490 2.57147 2.85442 2.95807 3.10656 3.26217 3.62210 3.80442 3.91368 4.14188 4.17013 4.28665 4.34090 4.35262 4.43501 4.49941 4.52150 4.53826 4.56119 4.62442 4.65407 4.76154 4.84381 4.85528 4.89038 4.97320 5.01312 5.09747 5.44369 5.68256 5.94833 6.22845 6.34055 6.41757 6.59655 6.77995 7.19934 8.81135 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.003435 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.768751 B = 8149.125147 C = 8887.595170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.058 3.942 4 H 0.086 0.914 5 C 0.019 3.981 6 N -0.677 5.677 7 C 0.075 3.925 8 H 0.077 0.923 9 C 0.063 3.937 10 O -0.401 6.401 11 C 0.070 3.930 12 C 0.046 3.954 13 O -0.404 6.404 14 C 0.179 3.821 15 C -0.546 4.546 16 H 0.027 0.973 17 C 0.011 3.989 18 N -0.943 5.943 19 Si 0.959 3.041 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.242 1.242 23 C -0.140 4.140 24 H 0.096 0.904 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.342 0.658 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.006 0.994 38 H 0.273 0.727 39 H 0.098 0.902 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 -13.059 19.904 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C -0.002 4.002 4 H 0.104 0.896 5 C -0.111 4.111 6 N -0.306 5.306 7 C -0.035 4.035 8 H 0.095 0.905 9 C -0.014 4.014 10 O -0.321 6.321 11 C -0.006 4.006 12 C -0.030 4.030 13 O -0.324 6.324 14 C 0.103 3.897 15 C -0.584 4.584 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.583 5.583 19 Si 0.780 3.220 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.166 1.166 23 C -0.179 4.179 24 H 0.114 0.886 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.159 0.841 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.024 0.976 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.799 -13.373 18.922 24.785 hybrid contribution -0.088 0.520 0.325 0.620 sum -8.887 -12.853 19.247 24.792 Atomic orbital electron populations 1.22983 0.79603 1.03849 1.00816 1.87918 1.21386 1.27700 1.95050 1.23634 0.95292 0.85196 0.96049 0.89605 1.23556 0.91697 0.98948 0.96896 1.63250 1.14221 1.05371 1.47757 1.22569 0.93220 0.96417 0.91267 0.90483 1.22748 0.89018 0.98399 0.91195 1.88071 1.35042 1.70412 1.38550 1.22608 0.88201 0.94684 0.95148 1.22765 0.95726 0.95371 0.89149 1.87938 1.40279 1.73534 1.30602 1.20315 0.90400 0.94109 0.84840 1.21181 0.99000 1.34823 1.03412 0.95500 1.25892 1.04261 0.93999 0.94543 1.70040 1.39708 1.38514 1.10023 0.85565 0.77714 0.78921 0.79849 1.18621 1.19566 1.16579 1.22875 0.92690 1.04144 0.98196 0.88564 0.93538 0.92761 0.91058 0.89617 0.84101 0.92431 0.90184 0.92760 0.88465 0.90365 0.93286 0.96517 0.97582 0.91773 0.88325 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.40 -7.84 10.31 -148.98 -1.54 -9.37 16 3 C 0.06 1.03 3.54 31.49 0.11 1.14 16 4 H 0.09 1.19 7.81 -2.39 -0.02 1.17 16 5 C 0.02 0.43 7.21 86.45 0.62 1.05 16 6 N -0.68 -18.54 7.42 -478.97 -3.56 -22.09 16 7 C 0.08 1.77 3.51 45.06 0.16 1.93 16 8 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 9 C 0.06 1.43 5.34 71.98 0.38 1.82 16 10 O -0.40 -13.22 10.31 -144.34 -1.49 -14.71 16 11 C 0.07 1.98 6.32 71.98 0.45 2.43 16 12 C 0.05 1.64 6.32 71.98 0.45 2.09 16 13 O -0.40 -20.16 10.29 -144.34 -1.49 -21.64 16 14 C 0.18 9.48 4.76 71.24 0.34 9.81 16 15 C -0.55 -34.94 9.99 25.60 0.26 -34.69 16 16 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 17 C 0.01 0.65 5.47 84.65 0.46 1.12 16 18 N -0.94 -61.19 13.96 21.45 0.30 -60.89 16 19 Si 0.96 44.67 27.47 68.60 1.88 46.55 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 23 C -0.14 -2.37 6.36 31.49 0.20 -2.17 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.53 8.10 -2.38 -0.02 0.51 16 27 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 28 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.34 8.72 8.54 -89.69 -0.77 7.95 16 30 H 0.06 1.18 8.00 -2.39 -0.02 1.16 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 37 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 38 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 39 H 0.10 1.23 7.86 -2.38 -0.02 1.21 16 40 H 0.09 1.51 7.98 -2.39 -0.02 1.49 16 Total: -1.00 -79.28 330.96 -1.03 -80.30 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.18 Total: 15.79 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.67 Total: -13.93 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.26 Total: -82.99 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -4.51 Total: -45.73 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -79.28 -1.03 -80.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724350840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.113 kcal (2) G-P(sol) polarization free energy of solvation -79.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds