Wall clock time and date at job start Mon Mar 30 2020 05:52:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42899 * 114.00169 * 2 1
4 4 H 1.08991 * 109.61933 * 330.22642 * 3 2 1
5 5 C 1.53182 * 109.53882 * 90.45009 * 3 2 1
6 6 C 1.53098 * 109.16017 * 176.84631 * 5 3 2
7 7 O 1.42899 * 109.41278 * 302.38708 * 6 5 3
8 8 C 1.42910 * 114.15747 * 61.12696 * 7 6 5
9 9 C 1.53087 * 109.41046 * 298.94250 * 8 7 6
10 10 H 1.09002 * 109.52309 * 297.56486 * 9 8 7
11 11 N 1.46901 * 109.52243 * 177.44638 * 9 8 7
12 12 C 1.46894 * 111.00307 * 85.12274 * 11 9 8
13 13 C 1.53001 * 109.47322 * 179.97438 * 12 11 9
14 14 O 1.42905 * 109.46715 * 64.99927 * 13 12 11
15 15 C 1.42908 * 113.99543 * 180.02562 * 14 13 12
16 16 C 1.50695 * 109.46652 * 180.02562 * 15 14 13
17 17 H 1.08004 * 120.00546 * 0.27680 * 16 15 14
18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14
19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15
21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16
22 22 H 1.48501 * 109.46793 * 120.00131 * 20 18 16
23 23 H 1.48500 * 109.47000 * 240.00224 * 20 18 16
24 24 H 1.08993 * 109.47614 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.46813 * 299.99923 * 1 2 3
26 26 H 1.08999 * 109.46761 * 59.99304 * 1 2 3
27 27 H 1.08997 * 109.51912 * 296.74866 * 5 3 2
28 28 H 1.09001 * 109.52795 * 56.87885 * 5 3 2
29 29 H 1.08995 * 109.47672 * 62.37450 * 6 5 3
30 30 H 1.08996 * 109.47771 * 182.39149 * 6 5 3
31 31 H 1.08996 * 109.53921 * 178.92135 * 8 7 6
32 32 H 1.09008 * 109.42345 * 58.88417 * 8 7 6
33 33 H 1.00900 * 110.99814 * 209.07799 * 11 9 8
34 34 H 1.09003 * 109.47473 * 59.99927 * 12 11 9
35 35 H 1.09000 * 109.47103 * 300.00105 * 12 11 9
36 36 H 1.08995 * 109.47267 * 305.00099 * 13 12 11
37 37 H 1.08995 * 109.47083 * 184.99764 * 13 12 11
38 38 H 1.08992 * 109.47346 * 60.00168 * 15 14 13
39 39 H 1.08997 * 109.47015 * 299.99630 * 15 14 13
40 40 H 0.97000 * 119.99706 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3450 2.0022 -0.5098
5 6 2.2290 1.7688 1.4436
6 6 2.9235 3.1332 1.4336
7 8 4.1579 3.0326 0.7206
8 6 4.0130 2.6480 -0.6481
9 6 3.3608 1.2650 -0.7218
10 1 4.0083 0.5309 -0.2422
11 7 3.1549 0.8936 -2.1280
12 6 4.3642 0.2802 -2.6930
13 6 4.1114 -0.0928 -4.1552
14 8 3.8976 1.0955 -4.9197
15 6 3.6504 0.8574 -6.3070
16 6 3.4409 2.1723 -7.0127
17 1 3.4959 3.0976 -6.4583
18 6 3.1851 2.1945 -8.3674
19 7 3.1235 1.0681 -9.0435
20 14 2.9247 3.8244 -9.2421
21 1 3.0435 4.9355 -8.2642
22 1 3.9518 3.9868 -10.3023
23 1 1.5724 3.8465 -9.8554
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5139 -0.8899
27 1 1.2668 1.8536 1.9486
28 1 2.8532 1.0452 1.9679
29 1 2.2801 3.8649 0.9451
30 1 3.1200 3.4485 2.4582
31 1 4.9936 2.6133 -1.1227
32 1 3.3847 3.3742 -1.1641
33 1 2.3588 0.2817 -2.2276
34 1 4.6145 -0.6174 -2.1276
35 1 5.1912 0.9880 -2.6360
36 1 3.2297 -0.7303 -4.2203
37 1 4.9761 -0.6272 -4.5485
38 1 2.7590 0.2398 -6.4164
39 1 4.5052 0.3424 -6.7452
40 1 2.9432 1.0838 -9.9965
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724903498.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:52:07
Heat of formation + Delta-G solvation = -142.550983 kcal
Electronic energy + Delta-G solvation = -19975.245854 eV
Core-core repulsion = 16790.130789 eV
Total energy + Delta-G solvation = -3185.115065 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.00980 -37.54742 -37.01019 -35.26536 -32.70407 -32.23153 -30.51073 -27.75481
-27.04351 -26.35506 -24.34016 -23.00878 -22.23847 -21.28691 -20.46004 -17.14916
-16.74252 -16.32579 -16.22924 -15.66744 -15.54194 -15.36985 -14.71263 -14.52645
-14.47210 -14.00094 -13.77769 -13.30008 -13.12461 -12.76246 -12.54163 -12.10776
-11.94345 -11.69861 -11.44020 -11.23311 -11.04187 -10.76953 -10.73214 -10.48873
-10.40517 -9.97790 -9.86573 -9.71493 -9.02981 -8.76571 -8.22547 -8.09061
-6.06577 -4.07317 3.31953 3.38258 3.43905 3.45357 3.67404 4.23244
4.39258 4.49052 4.66122 4.80290 4.89873 4.95754 5.07927 5.10842
5.17983 5.27927 5.30047 5.35098 5.47078 5.50916 5.57948 5.58656
5.68952 5.76899 5.88934 5.98839 6.05958 6.13785 6.32779 6.92875
6.94533 7.15996 7.25452 7.48929 7.55706 7.85640 8.21864 8.66795
9.07852 9.57459 11.05212
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.023809 B = 0.004009 C = 0.003869
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1175.737975 B = 6981.979165 C = 7234.533580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.385 6.385
3 C 0.084 3.916
4 H 0.074 0.926
5 C -0.174 4.174
6 C 0.062 3.938
7 O -0.383 6.383
8 C 0.072 3.928
9 C 0.060 3.940
10 H 0.056 0.944
11 N -0.666 5.666
12 C 0.065 3.935
13 C 0.065 3.935
14 O -0.381 6.381
15 C 0.193 3.807
16 C -0.509 4.509
17 H 0.067 0.933
18 C 0.055 3.945
19 N -0.900 5.900
20 Si 0.906 3.094
21 H -0.270 1.270
22 H -0.283 1.283
23 H -0.283 1.283
24 H 0.086 0.914
25 H 0.039 0.961
26 H 0.047 0.953
27 H 0.074 0.926
28 H 0.079 0.921
29 H 0.053 0.947
30 H 0.095 0.905
31 H 0.102 0.898
32 H 0.065 0.935
33 H 0.348 0.652
34 H 0.036 0.964
35 H 0.078 0.922
36 H 0.034 0.966
37 H 0.041 0.959
38 H 0.003 0.997
39 H 0.002 0.998
40 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.123 -0.800 21.091 21.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.303 6.303
3 C 0.026 3.974
4 H 0.092 0.908
5 C -0.213 4.213
6 C -0.015 4.015
7 O -0.301 6.301
8 C -0.005 4.005
9 C -0.050 4.050
10 H 0.074 0.926
11 N -0.300 5.300
12 C -0.064 4.064
13 C -0.013 4.013
14 O -0.300 6.300
15 C 0.119 3.881
16 C -0.548 4.548
17 H 0.085 0.915
18 C -0.146 4.146
19 N -0.540 5.540
20 Si 0.734 3.266
21 H -0.195 1.195
22 H -0.209 1.209
23 H -0.209 1.209
24 H 0.104 0.896
25 H 0.058 0.942
26 H 0.066 0.934
27 H 0.093 0.907
28 H 0.098 0.902
29 H 0.071 0.929
30 H 0.114 0.886
31 H 0.120 0.880
32 H 0.083 0.917
33 H 0.168 0.832
34 H 0.054 0.946
35 H 0.096 0.904
36 H 0.052 0.948
37 H 0.059 0.941
38 H 0.021 0.979
39 H 0.020 0.980
40 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -2.709 -0.181 20.833 21.009
hybrid contribution -0.752 -0.417 -0.434 0.963
sum -3.462 -0.597 20.399 20.700
Atomic orbital electron populations
1.22813 0.80789 1.02839 1.00184 1.87890 1.19962 1.27535 1.94943
1.22366 0.94989 0.85213 0.94865 0.90847 1.22725 1.01964 0.98935
0.97666 1.22534 0.86298 0.95155 0.97481 1.87939 1.29523 1.89005
1.23635 1.22634 1.02348 0.93796 0.81739 1.22224 0.94939 0.98418
0.89466 0.92580 1.60314 1.06645 1.49002 1.14076 1.22055 0.93116
0.97231 0.94006 1.22223 0.98605 0.89694 0.90752 1.87948 1.92062
1.27659 1.22353 1.20188 0.94548 0.97501 0.75912 1.21111 1.47930
0.92897 0.92820 0.91466 1.24952 0.95422 0.97109 0.97115 1.69979
1.49770 1.25904 1.08358 0.86300 0.77684 0.83268 0.79358 1.19463
1.20908 1.20911 0.89588 0.94236 0.93423 0.90694 0.90222 0.92894
0.88643 0.88007 0.91692 0.83230 0.94573 0.90378 0.94761 0.94107
0.97902 0.97992 0.92809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 10.83 101.05 1.09 1.36 16
2 O -0.38 -4.52 9.66 -35.23 -0.34 -4.86 16
3 C 0.08 0.95 2.20 -26.54 -0.06 0.89 16
4 H 0.07 0.84 7.79 -51.93 -0.40 0.43 16
5 C -0.17 -1.62 5.76 -26.59 -0.15 -1.78 16
6 C 0.06 0.58 6.85 37.21 0.25 0.84 16
7 O -0.38 -4.75 10.76 -35.23 -0.38 -5.13 16
8 C 0.07 0.93 6.34 37.20 0.24 1.17 16
9 C 0.06 0.78 2.39 -67.57 -0.16 0.62 16
10 H 0.06 0.75 7.80 -51.93 -0.41 0.35 16
11 N -0.67 -10.14 6.26 -106.58 -0.67 -10.80 16
12 C 0.06 1.00 5.87 -3.83 -0.02 0.98 16
13 C 0.07 1.24 6.22 37.16 0.23 1.47 16
14 O -0.38 -9.37 10.27 -35.23 -0.36 -9.73 16
15 C 0.19 5.40 5.69 36.00 0.20 5.61 16
16 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16
17 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16
18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16
19 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16
20 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16
21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16
24 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16
25 H 0.04 0.29 7.99 -51.93 -0.42 -0.12 16
26 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16
27 H 0.07 0.57 7.99 -51.93 -0.42 0.16 16
28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.10 1.33 7.53 -51.93 -0.39 0.94 16
32 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16
33 H 0.35 5.28 7.78 -39.29 -0.31 4.97 16
34 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16
35 H 0.08 1.21 7.50 -51.93 -0.39 0.83 16
36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16
39 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16
40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
LS Contribution 328.06 15.07 4.94 4.94
Total: -1.00 -32.48 328.06 -6.80 -39.28
By element:
Atomic # 1 Polarization: 5.62 SS G_CDS: -6.91 Total: -1.30 kcal
Atomic # 6 Polarization: -4.14 SS G_CDS: 1.20 Total: -2.93 kcal
Atomic # 7 Polarization: -37.45 SS G_CDS: 0.07 Total: -37.38 kcal
Atomic # 8 Polarization: -18.64 SS G_CDS: -1.08 Total: -19.72 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -32.48 -6.80 -39.28 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724903498.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.269 kcal
(2) G-P(sol) polarization free energy of solvation -32.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds