Wall clock time and date at job start Mon Mar 30 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00169 * 2 1 4 4 H 1.08991 * 109.61933 * 330.22642 * 3 2 1 5 5 C 1.53182 * 109.53882 * 90.45009 * 3 2 1 6 6 C 1.53098 * 109.16017 * 176.84631 * 5 3 2 7 7 O 1.42899 * 109.41278 * 302.38708 * 6 5 3 8 8 C 1.42910 * 114.15747 * 61.12696 * 7 6 5 9 9 C 1.53087 * 109.41046 * 298.94250 * 8 7 6 10 10 H 1.09002 * 109.52309 * 297.56486 * 9 8 7 11 11 N 1.46901 * 109.52243 * 177.44638 * 9 8 7 12 12 C 1.46894 * 111.00307 * 85.12274 * 11 9 8 13 13 C 1.53001 * 109.47322 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.46715 * 64.99927 * 13 12 11 15 15 C 1.42908 * 113.99543 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.46652 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27680 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46793 * 120.00131 * 20 18 16 23 23 H 1.48500 * 109.47000 * 240.00224 * 20 18 16 24 24 H 1.08993 * 109.47614 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46813 * 299.99923 * 1 2 3 26 26 H 1.08999 * 109.46761 * 59.99304 * 1 2 3 27 27 H 1.08997 * 109.51912 * 296.74866 * 5 3 2 28 28 H 1.09001 * 109.52795 * 56.87885 * 5 3 2 29 29 H 1.08995 * 109.47672 * 62.37450 * 6 5 3 30 30 H 1.08996 * 109.47771 * 182.39149 * 6 5 3 31 31 H 1.08996 * 109.53921 * 178.92135 * 8 7 6 32 32 H 1.09008 * 109.42345 * 58.88417 * 8 7 6 33 33 H 1.00900 * 110.99814 * 209.07799 * 11 9 8 34 34 H 1.09003 * 109.47473 * 59.99927 * 12 11 9 35 35 H 1.09000 * 109.47103 * 300.00105 * 12 11 9 36 36 H 1.08995 * 109.47267 * 305.00099 * 13 12 11 37 37 H 1.08995 * 109.47083 * 184.99764 * 13 12 11 38 38 H 1.08992 * 109.47346 * 60.00168 * 15 14 13 39 39 H 1.08997 * 109.47015 * 299.99630 * 15 14 13 40 40 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0022 -0.5098 5 6 2.2290 1.7688 1.4436 6 6 2.9235 3.1332 1.4336 7 8 4.1579 3.0326 0.7206 8 6 4.0130 2.6480 -0.6481 9 6 3.3608 1.2650 -0.7218 10 1 4.0083 0.5309 -0.2422 11 7 3.1549 0.8936 -2.1280 12 6 4.3642 0.2802 -2.6930 13 6 4.1114 -0.0928 -4.1552 14 8 3.8976 1.0955 -4.9197 15 6 3.6504 0.8574 -6.3070 16 6 3.4409 2.1723 -7.0127 17 1 3.4959 3.0976 -6.4583 18 6 3.1851 2.1945 -8.3674 19 7 3.1235 1.0681 -9.0435 20 14 2.9247 3.8244 -9.2421 21 1 3.0435 4.9355 -8.2642 22 1 3.9518 3.9868 -10.3023 23 1 1.5724 3.8465 -9.8554 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.2668 1.8536 1.9486 28 1 2.8532 1.0452 1.9679 29 1 2.2801 3.8649 0.9451 30 1 3.1200 3.4485 2.4582 31 1 4.9936 2.6133 -1.1227 32 1 3.3847 3.3742 -1.1641 33 1 2.3588 0.2817 -2.2276 34 1 4.6145 -0.6174 -2.1276 35 1 5.1912 0.9880 -2.6360 36 1 3.2297 -0.7303 -4.2203 37 1 4.9761 -0.6272 -4.5485 38 1 2.7590 0.2398 -6.4164 39 1 4.5052 0.3424 -6.7452 40 1 2.9432 1.0838 -9.9965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724903498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:07 Heat of formation + Delta-G solvation = -142.550983 kcal Electronic energy + Delta-G solvation = -19975.245854 eV Core-core repulsion = 16790.130789 eV Total energy + Delta-G solvation = -3185.115065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00980 -37.54742 -37.01019 -35.26536 -32.70407 -32.23153 -30.51073 -27.75481 -27.04351 -26.35506 -24.34016 -23.00878 -22.23847 -21.28691 -20.46004 -17.14916 -16.74252 -16.32579 -16.22924 -15.66744 -15.54194 -15.36985 -14.71263 -14.52645 -14.47210 -14.00094 -13.77769 -13.30008 -13.12461 -12.76246 -12.54163 -12.10776 -11.94345 -11.69861 -11.44020 -11.23311 -11.04187 -10.76953 -10.73214 -10.48873 -10.40517 -9.97790 -9.86573 -9.71493 -9.02981 -8.76571 -8.22547 -8.09061 -6.06577 -4.07317 3.31953 3.38258 3.43905 3.45357 3.67404 4.23244 4.39258 4.49052 4.66122 4.80290 4.89873 4.95754 5.07927 5.10842 5.17983 5.27927 5.30047 5.35098 5.47078 5.50916 5.57948 5.58656 5.68952 5.76899 5.88934 5.98839 6.05958 6.13785 6.32779 6.92875 6.94533 7.15996 7.25452 7.48929 7.55706 7.85640 8.21864 8.66795 9.07852 9.57459 11.05212 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.004009 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.737975 B = 6981.979165 C = 7234.533580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.084 3.916 4 H 0.074 0.926 5 C -0.174 4.174 6 C 0.062 3.938 7 O -0.383 6.383 8 C 0.072 3.928 9 C 0.060 3.940 10 H 0.056 0.944 11 N -0.666 5.666 12 C 0.065 3.935 13 C 0.065 3.935 14 O -0.381 6.381 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.067 0.933 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.906 3.094 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.348 0.652 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -0.800 21.091 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.092 0.908 5 C -0.213 4.213 6 C -0.015 4.015 7 O -0.301 6.301 8 C -0.005 4.005 9 C -0.050 4.050 10 H 0.074 0.926 11 N -0.300 5.300 12 C -0.064 4.064 13 C -0.013 4.013 14 O -0.300 6.300 15 C 0.119 3.881 16 C -0.548 4.548 17 H 0.085 0.915 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.168 0.832 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.709 -0.181 20.833 21.009 hybrid contribution -0.752 -0.417 -0.434 0.963 sum -3.462 -0.597 20.399 20.700 Atomic orbital electron populations 1.22813 0.80789 1.02839 1.00184 1.87890 1.19962 1.27535 1.94943 1.22366 0.94989 0.85213 0.94865 0.90847 1.22725 1.01964 0.98935 0.97666 1.22534 0.86298 0.95155 0.97481 1.87939 1.29523 1.89005 1.23635 1.22634 1.02348 0.93796 0.81739 1.22224 0.94939 0.98418 0.89466 0.92580 1.60314 1.06645 1.49002 1.14076 1.22055 0.93116 0.97231 0.94006 1.22223 0.98605 0.89694 0.90752 1.87948 1.92062 1.27659 1.22353 1.20188 0.94548 0.97501 0.75912 1.21111 1.47930 0.92897 0.92820 0.91466 1.24952 0.95422 0.97109 0.97115 1.69979 1.49770 1.25904 1.08358 0.86300 0.77684 0.83268 0.79358 1.19463 1.20908 1.20911 0.89588 0.94236 0.93423 0.90694 0.90222 0.92894 0.88643 0.88007 0.91692 0.83230 0.94573 0.90378 0.94761 0.94107 0.97902 0.97992 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.83 101.05 1.09 1.36 16 2 O -0.38 -4.52 9.66 -35.23 -0.34 -4.86 16 3 C 0.08 0.95 2.20 -26.54 -0.06 0.89 16 4 H 0.07 0.84 7.79 -51.93 -0.40 0.43 16 5 C -0.17 -1.62 5.76 -26.59 -0.15 -1.78 16 6 C 0.06 0.58 6.85 37.21 0.25 0.84 16 7 O -0.38 -4.75 10.76 -35.23 -0.38 -5.13 16 8 C 0.07 0.93 6.34 37.20 0.24 1.17 16 9 C 0.06 0.78 2.39 -67.57 -0.16 0.62 16 10 H 0.06 0.75 7.80 -51.93 -0.41 0.35 16 11 N -0.67 -10.14 6.26 -106.58 -0.67 -10.80 16 12 C 0.06 1.00 5.87 -3.83 -0.02 0.98 16 13 C 0.07 1.24 6.22 37.16 0.23 1.47 16 14 O -0.38 -9.37 10.27 -35.23 -0.36 -9.73 16 15 C 0.19 5.40 5.69 36.00 0.20 5.61 16 16 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 17 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 20 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.29 7.99 -51.93 -0.42 -0.12 16 26 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.57 7.99 -51.93 -0.42 0.16 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.33 7.53 -51.93 -0.39 0.94 16 32 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.35 5.28 7.78 -39.29 -0.31 4.97 16 34 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.08 1.21 7.50 -51.93 -0.39 0.83 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -32.48 328.06 -6.80 -39.28 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.91 Total: -1.30 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 1.20 Total: -2.93 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.07 Total: -37.38 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -1.08 Total: -19.72 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.48 -6.80 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724903498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.269 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds