Wall clock time and date at job start Mon Mar 30 2020 05:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00169 * 2 1 4 4 H 1.08991 * 109.61933 * 330.22642 * 3 2 1 5 5 C 1.53182 * 109.53882 * 90.45009 * 3 2 1 6 6 C 1.53098 * 109.16017 * 176.84631 * 5 3 2 7 7 O 1.42899 * 109.41278 * 302.38708 * 6 5 3 8 8 C 1.42910 * 114.15747 * 61.12696 * 7 6 5 9 9 C 1.53087 * 109.41046 * 298.94250 * 8 7 6 10 10 H 1.09002 * 109.52309 * 297.56486 * 9 8 7 11 11 N 1.46901 * 109.52243 * 177.44638 * 9 8 7 12 12 C 1.46894 * 111.00307 * 85.12274 * 11 9 8 13 13 C 1.53001 * 109.47322 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.46715 * 64.99927 * 13 12 11 15 15 C 1.42908 * 113.99543 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.46652 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27680 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46793 * 120.00131 * 20 18 16 23 23 H 1.48500 * 109.47000 * 240.00224 * 20 18 16 24 24 H 1.08993 * 109.47614 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46813 * 299.99923 * 1 2 3 26 26 H 1.08999 * 109.46761 * 59.99304 * 1 2 3 27 27 H 1.08997 * 109.51912 * 296.74866 * 5 3 2 28 28 H 1.09001 * 109.52795 * 56.87885 * 5 3 2 29 29 H 1.08995 * 109.47672 * 62.37450 * 6 5 3 30 30 H 1.08996 * 109.47771 * 182.39149 * 6 5 3 31 31 H 1.08996 * 109.53921 * 178.92135 * 8 7 6 32 32 H 1.09008 * 109.42345 * 58.88417 * 8 7 6 33 33 H 1.00900 * 110.99814 * 209.07799 * 11 9 8 34 34 H 1.09003 * 109.47473 * 59.99927 * 12 11 9 35 35 H 1.09000 * 109.47103 * 300.00105 * 12 11 9 36 36 H 1.08995 * 109.47267 * 305.00099 * 13 12 11 37 37 H 1.08995 * 109.47083 * 184.99764 * 13 12 11 38 38 H 1.08992 * 109.47346 * 60.00168 * 15 14 13 39 39 H 1.08997 * 109.47015 * 299.99630 * 15 14 13 40 40 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0022 -0.5098 5 6 2.2290 1.7688 1.4436 6 6 2.9235 3.1332 1.4336 7 8 4.1579 3.0326 0.7206 8 6 4.0130 2.6480 -0.6481 9 6 3.3608 1.2650 -0.7218 10 1 4.0083 0.5309 -0.2422 11 7 3.1549 0.8936 -2.1280 12 6 4.3642 0.2802 -2.6930 13 6 4.1114 -0.0928 -4.1552 14 8 3.8976 1.0955 -4.9197 15 6 3.6504 0.8574 -6.3070 16 6 3.4409 2.1723 -7.0127 17 1 3.4959 3.0976 -6.4583 18 6 3.1851 2.1945 -8.3674 19 7 3.1235 1.0681 -9.0435 20 14 2.9247 3.8244 -9.2421 21 1 3.0435 4.9355 -8.2642 22 1 3.9518 3.9868 -10.3023 23 1 1.5724 3.8465 -9.8554 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.2668 1.8536 1.9486 28 1 2.8532 1.0452 1.9679 29 1 2.2801 3.8649 0.9451 30 1 3.1200 3.4485 2.4582 31 1 4.9936 2.6133 -1.1227 32 1 3.3847 3.3742 -1.1641 33 1 2.3588 0.2817 -2.2276 34 1 4.6145 -0.6174 -2.1276 35 1 5.1912 0.9880 -2.6360 36 1 3.2297 -0.7303 -4.2203 37 1 4.9761 -0.6272 -4.5485 38 1 2.7590 0.2398 -6.4164 39 1 4.5052 0.3424 -6.7452 40 1 2.9432 1.0838 -9.9965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724903498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:06 Heat of formation + Delta-G solvation = -167.537713 kcal Electronic energy + Delta-G solvation = -19976.329360 eV Core-core repulsion = 16790.130789 eV Total energy + Delta-G solvation = -3186.198571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92408 -38.73182 -38.40247 -36.61524 -34.86754 -33.14117 -31.72564 -29.52709 -28.03103 -27.78509 -25.21113 -24.50129 -23.96500 -22.59643 -21.38622 -18.64269 -17.99809 -17.77835 -17.38757 -17.08921 -16.73879 -16.48367 -16.30244 -15.87246 -15.55296 -15.20675 -15.05163 -14.77812 -14.17745 -13.99118 -13.94303 -13.40853 -13.09821 -12.96500 -12.84391 -12.70928 -12.62526 -12.29279 -12.16446 -11.96587 -11.69080 -11.38024 -11.23655 -10.86165 -10.76428 -10.57425 -10.18261 -9.38247 -8.30790 -6.42518 1.40677 1.42152 1.57163 2.36256 2.61506 2.74639 3.03042 3.19034 3.27124 3.60177 3.81699 3.96896 4.00738 4.17627 4.24270 4.26903 4.41396 4.43414 4.48266 4.56141 4.59288 4.64721 4.72906 4.74595 4.83245 4.84823 4.86843 4.97733 4.99973 5.11471 5.20434 5.57228 5.88750 5.99084 6.14378 6.24965 6.36245 6.58283 6.87177 7.29737 8.81917 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.004009 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.737975 B = 6981.979165 C = 7234.533580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.085 3.915 4 H 0.070 0.930 5 C -0.166 4.166 6 C 0.056 3.944 7 O -0.396 6.396 8 C 0.077 3.923 9 C 0.064 3.936 10 H 0.053 0.947 11 N -0.682 5.682 12 C 0.075 3.925 13 C 0.057 3.943 14 O -0.395 6.395 15 C 0.207 3.793 16 C -0.544 4.544 17 H 0.060 0.940 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.983 3.017 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.347 0.653 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.050 0.950 38 H -0.017 1.017 39 H -0.016 1.016 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 0.080 22.062 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.027 3.973 4 H 0.088 0.912 5 C -0.204 4.204 6 C -0.021 4.021 7 O -0.314 6.314 8 C -0.001 4.001 9 C -0.047 4.047 10 H 0.071 0.929 11 N -0.316 5.316 12 C -0.054 4.054 13 C -0.020 4.020 14 O -0.314 6.314 15 C 0.132 3.868 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.572 5.572 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.279 0.685 21.832 22.088 hybrid contribution -0.590 -0.770 -0.664 1.175 sum -3.869 -0.085 21.169 21.519 Atomic orbital electron populations 1.22972 0.79403 1.03851 1.00835 1.87858 1.21517 1.27694 1.95107 1.22346 0.93865 0.85198 0.95926 0.91233 1.22663 1.02993 0.98536 0.96216 1.22793 0.85416 0.95456 0.98397 1.87920 1.31353 1.89012 1.23160 1.22492 1.01707 0.93585 0.82298 1.22213 0.96145 0.98094 0.88204 0.92857 1.60281 1.06438 1.49086 1.15810 1.21954 0.93269 0.98427 0.91790 1.22552 0.99134 0.88209 0.92144 1.87905 1.92098 1.30573 1.20843 1.19813 0.92774 0.96422 0.77766 1.21413 1.49602 0.93247 0.93925 0.92146 1.25957 0.94233 1.01433 0.97594 1.70080 1.49611 1.28382 1.09083 0.85138 0.78248 0.77995 0.78030 1.18876 1.19635 1.19629 0.88480 0.92456 0.93879 0.88512 0.90688 0.92203 0.86303 0.88770 0.92656 0.83374 0.91851 0.90526 0.94398 0.93234 0.99887 0.99829 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.83 113.37 1.23 1.64 16 2 O -0.40 -8.95 9.66 -148.98 -1.44 -10.39 16 3 C 0.08 1.81 2.20 30.72 0.07 1.88 16 4 H 0.07 1.53 7.79 -2.39 -0.02 1.51 16 5 C -0.17 -2.74 5.76 30.69 0.18 -2.56 16 6 C 0.06 0.93 6.85 72.01 0.49 1.42 16 7 O -0.40 -9.39 10.76 -148.98 -1.60 -10.99 16 8 C 0.08 1.96 6.34 72.01 0.46 2.42 16 9 C 0.06 1.61 2.39 45.00 0.11 1.72 16 10 H 0.05 1.38 7.80 -2.39 -0.02 1.36 16 11 N -0.68 -20.59 6.26 -491.11 -3.07 -23.67 16 12 C 0.07 2.27 5.87 86.30 0.51 2.77 16 13 C 0.06 2.17 6.22 71.98 0.45 2.62 16 14 O -0.39 -19.85 10.27 -148.98 -1.53 -21.38 16 15 C 0.21 11.98 5.69 71.23 0.41 12.38 16 16 C -0.54 -33.18 9.43 25.60 0.24 -32.94 16 17 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 18 C 0.01 0.35 5.46 84.66 0.46 0.81 16 19 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 20 Si 0.98 45.05 29.54 68.60 2.03 47.08 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 0.72 7.99 -2.39 -0.02 0.70 16 26 H 0.04 0.73 8.09 -2.39 -0.02 0.71 16 27 H 0.10 1.19 7.99 -2.39 -0.02 1.17 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 2.48 7.53 -2.39 -0.02 2.47 16 32 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.35 10.47 7.78 -89.69 -0.70 9.77 16 34 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16 35 H 0.08 2.36 7.50 -2.39 -0.02 2.34 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -69.41 328.06 -0.44 -69.85 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.30 Total: 13.86 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.59 Total: -7.84 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.79 Total: -80.20 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -4.57 Total: -42.76 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -69.41 -0.44 -69.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724903498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.687 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds