Wall clock time and date at job start Mon Mar 30 2020 05:52:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42899 * 114.00169 * 2 1
4 4 H 1.08991 * 109.61933 * 330.22642 * 3 2 1
5 5 C 1.53182 * 109.53882 * 90.45009 * 3 2 1
6 6 C 1.53098 * 109.16017 * 176.84631 * 5 3 2
7 7 O 1.42899 * 109.41278 * 302.38708 * 6 5 3
8 8 C 1.42910 * 114.15747 * 61.12696 * 7 6 5
9 9 C 1.53087 * 109.41046 * 298.94250 * 8 7 6
10 10 H 1.09002 * 109.52309 * 297.56486 * 9 8 7
11 11 N 1.46901 * 109.52243 * 177.44638 * 9 8 7
12 12 C 1.46894 * 111.00307 * 85.12274 * 11 9 8
13 13 C 1.53001 * 109.47322 * 179.97438 * 12 11 9
14 14 O 1.42905 * 109.46715 * 64.99927 * 13 12 11
15 15 C 1.42908 * 113.99543 * 180.02562 * 14 13 12
16 16 C 1.50695 * 109.46652 * 180.02562 * 15 14 13
17 17 H 1.08004 * 120.00546 * 0.27680 * 16 15 14
18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14
19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15
21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16
22 22 H 1.48501 * 109.46793 * 120.00131 * 20 18 16
23 23 H 1.48500 * 109.47000 * 240.00224 * 20 18 16
24 24 H 1.08993 * 109.47614 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.46813 * 299.99923 * 1 2 3
26 26 H 1.08999 * 109.46761 * 59.99304 * 1 2 3
27 27 H 1.08997 * 109.51912 * 296.74866 * 5 3 2
28 28 H 1.09001 * 109.52795 * 56.87885 * 5 3 2
29 29 H 1.08995 * 109.47672 * 62.37450 * 6 5 3
30 30 H 1.08996 * 109.47771 * 182.39149 * 6 5 3
31 31 H 1.08996 * 109.53921 * 178.92135 * 8 7 6
32 32 H 1.09008 * 109.42345 * 58.88417 * 8 7 6
33 33 H 1.00900 * 110.99814 * 209.07799 * 11 9 8
34 34 H 1.09003 * 109.47473 * 59.99927 * 12 11 9
35 35 H 1.09000 * 109.47103 * 300.00105 * 12 11 9
36 36 H 1.08995 * 109.47267 * 305.00099 * 13 12 11
37 37 H 1.08995 * 109.47083 * 184.99764 * 13 12 11
38 38 H 1.08992 * 109.47346 * 60.00168 * 15 14 13
39 39 H 1.08997 * 109.47015 * 299.99630 * 15 14 13
40 40 H 0.97000 * 119.99706 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3450 2.0022 -0.5098
5 6 2.2290 1.7688 1.4436
6 6 2.9235 3.1332 1.4336
7 8 4.1579 3.0326 0.7206
8 6 4.0130 2.6480 -0.6481
9 6 3.3608 1.2650 -0.7218
10 1 4.0083 0.5309 -0.2422
11 7 3.1549 0.8936 -2.1280
12 6 4.3642 0.2802 -2.6930
13 6 4.1114 -0.0928 -4.1552
14 8 3.8976 1.0955 -4.9197
15 6 3.6504 0.8574 -6.3070
16 6 3.4409 2.1723 -7.0127
17 1 3.4959 3.0976 -6.4583
18 6 3.1851 2.1945 -8.3674
19 7 3.1235 1.0681 -9.0435
20 14 2.9247 3.8244 -9.2421
21 1 3.0435 4.9355 -8.2642
22 1 3.9518 3.9868 -10.3023
23 1 1.5724 3.8465 -9.8554
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5139 -0.8899
27 1 1.2668 1.8536 1.9486
28 1 2.8532 1.0452 1.9679
29 1 2.2801 3.8649 0.9451
30 1 3.1200 3.4485 2.4582
31 1 4.9936 2.6133 -1.1227
32 1 3.3847 3.3742 -1.1641
33 1 2.3588 0.2817 -2.2276
34 1 4.6145 -0.6174 -2.1276
35 1 5.1912 0.9880 -2.6360
36 1 3.2297 -0.7303 -4.2203
37 1 4.9761 -0.6272 -4.5485
38 1 2.7590 0.2398 -6.4164
39 1 4.5052 0.3424 -6.7452
40 1 2.9432 1.0838 -9.9965
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724903498.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:52:06
Heat of formation + Delta-G solvation = -167.537713 kcal
Electronic energy + Delta-G solvation = -19976.329360 eV
Core-core repulsion = 16790.130789 eV
Total energy + Delta-G solvation = -3186.198571 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.92408 -38.73182 -38.40247 -36.61524 -34.86754 -33.14117 -31.72564 -29.52709
-28.03103 -27.78509 -25.21113 -24.50129 -23.96500 -22.59643 -21.38622 -18.64269
-17.99809 -17.77835 -17.38757 -17.08921 -16.73879 -16.48367 -16.30244 -15.87246
-15.55296 -15.20675 -15.05163 -14.77812 -14.17745 -13.99118 -13.94303 -13.40853
-13.09821 -12.96500 -12.84391 -12.70928 -12.62526 -12.29279 -12.16446 -11.96587
-11.69080 -11.38024 -11.23655 -10.86165 -10.76428 -10.57425 -10.18261 -9.38247
-8.30790 -6.42518 1.40677 1.42152 1.57163 2.36256 2.61506 2.74639
3.03042 3.19034 3.27124 3.60177 3.81699 3.96896 4.00738 4.17627
4.24270 4.26903 4.41396 4.43414 4.48266 4.56141 4.59288 4.64721
4.72906 4.74595 4.83245 4.84823 4.86843 4.97733 4.99973 5.11471
5.20434 5.57228 5.88750 5.99084 6.14378 6.24965 6.36245 6.58283
6.87177 7.29737 8.81917
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.023809 B = 0.004009 C = 0.003869
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1175.737975 B = 6981.979165 C = 7234.533580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.403 6.403
3 C 0.085 3.915
4 H 0.070 0.930
5 C -0.166 4.166
6 C 0.056 3.944
7 O -0.396 6.396
8 C 0.077 3.923
9 C 0.064 3.936
10 H 0.053 0.947
11 N -0.682 5.682
12 C 0.075 3.925
13 C 0.057 3.943
14 O -0.395 6.395
15 C 0.207 3.793
16 C -0.544 4.544
17 H 0.060 0.940
18 C 0.006 3.994
19 N -0.932 5.932
20 Si 0.983 3.017
21 H -0.265 1.265
22 H -0.271 1.271
23 H -0.271 1.271
24 H 0.097 0.903
25 H 0.057 0.943
26 H 0.043 0.957
27 H 0.096 0.904
28 H 0.074 0.926
29 H 0.060 0.940
30 H 0.119 0.881
31 H 0.094 0.906
32 H 0.055 0.945
33 H 0.347 0.653
34 H 0.064 0.936
35 H 0.076 0.924
36 H 0.038 0.962
37 H 0.050 0.950
38 H -0.017 1.017
39 H -0.016 1.016
40 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.693 0.080 22.062 22.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.322 6.322
3 C 0.027 3.973
4 H 0.088 0.912
5 C -0.204 4.204
6 C -0.021 4.021
7 O -0.314 6.314
8 C -0.001 4.001
9 C -0.047 4.047
10 H 0.071 0.929
11 N -0.316 5.316
12 C -0.054 4.054
13 C -0.020 4.020
14 O -0.314 6.314
15 C 0.132 3.868
16 C -0.582 4.582
17 H 0.079 0.921
18 C -0.192 4.192
19 N -0.572 5.572
20 Si 0.806 3.194
21 H -0.189 1.189
22 H -0.196 1.196
23 H -0.196 1.196
24 H 0.115 0.885
25 H 0.075 0.925
26 H 0.061 0.939
27 H 0.115 0.885
28 H 0.093 0.907
29 H 0.078 0.922
30 H 0.137 0.863
31 H 0.112 0.888
32 H 0.073 0.927
33 H 0.166 0.834
34 H 0.081 0.919
35 H 0.095 0.905
36 H 0.056 0.944
37 H 0.068 0.932
38 H 0.001 0.999
39 H 0.002 0.998
40 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -3.279 0.685 21.832 22.088
hybrid contribution -0.590 -0.770 -0.664 1.175
sum -3.869 -0.085 21.169 21.519
Atomic orbital electron populations
1.22972 0.79403 1.03851 1.00835 1.87858 1.21517 1.27694 1.95107
1.22346 0.93865 0.85198 0.95926 0.91233 1.22663 1.02993 0.98536
0.96216 1.22793 0.85416 0.95456 0.98397 1.87920 1.31353 1.89012
1.23160 1.22492 1.01707 0.93585 0.82298 1.22213 0.96145 0.98094
0.88204 0.92857 1.60281 1.06438 1.49086 1.15810 1.21954 0.93269
0.98427 0.91790 1.22552 0.99134 0.88209 0.92144 1.87905 1.92098
1.30573 1.20843 1.19813 0.92774 0.96422 0.77766 1.21413 1.49602
0.93247 0.93925 0.92146 1.25957 0.94233 1.01433 0.97594 1.70080
1.49611 1.28382 1.09083 0.85138 0.78248 0.77995 0.78030 1.18876
1.19635 1.19629 0.88480 0.92456 0.93879 0.88512 0.90688 0.92203
0.86303 0.88770 0.92656 0.83374 0.91851 0.90526 0.94398 0.93234
0.99887 0.99829 0.92091
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 10.83 113.37 1.23 1.64 16
2 O -0.40 -8.95 9.66 -148.98 -1.44 -10.39 16
3 C 0.08 1.81 2.20 30.72 0.07 1.88 16
4 H 0.07 1.53 7.79 -2.39 -0.02 1.51 16
5 C -0.17 -2.74 5.76 30.69 0.18 -2.56 16
6 C 0.06 0.93 6.85 72.01 0.49 1.42 16
7 O -0.40 -9.39 10.76 -148.98 -1.60 -10.99 16
8 C 0.08 1.96 6.34 72.01 0.46 2.42 16
9 C 0.06 1.61 2.39 45.00 0.11 1.72 16
10 H 0.05 1.38 7.80 -2.39 -0.02 1.36 16
11 N -0.68 -20.59 6.26 -491.11 -3.07 -23.67 16
12 C 0.07 2.27 5.87 86.30 0.51 2.77 16
13 C 0.06 2.17 6.22 71.98 0.45 2.62 16
14 O -0.39 -19.85 10.27 -148.98 -1.53 -21.38 16
15 C 0.21 11.98 5.69 71.23 0.41 12.38 16
16 C -0.54 -33.18 9.43 25.60 0.24 -32.94 16
17 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16
18 C 0.01 0.35 5.46 84.66 0.46 0.81 16
19 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16
20 Si 0.98 45.05 29.54 68.60 2.03 47.08 16
21 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16
22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16
25 H 0.06 0.72 7.99 -2.39 -0.02 0.70 16
26 H 0.04 0.73 8.09 -2.39 -0.02 0.71 16
27 H 0.10 1.19 7.99 -2.39 -0.02 1.17 16
28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
30 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16
31 H 0.09 2.48 7.53 -2.39 -0.02 2.47 16
32 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16
33 H 0.35 10.47 7.78 -89.69 -0.70 9.77 16
34 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16
35 H 0.08 2.36 7.50 -2.39 -0.02 2.34 16
36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16
37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16
40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16
Total: -1.00 -69.41 328.06 -0.44 -69.85
By element:
Atomic # 1 Polarization: 13.56 SS G_CDS: 0.30 Total: 13.86 kcal
Atomic # 6 Polarization: -12.43 SS G_CDS: 4.59 Total: -7.84 kcal
Atomic # 7 Polarization: -77.41 SS G_CDS: -2.79 Total: -80.20 kcal
Atomic # 8 Polarization: -38.19 SS G_CDS: -4.57 Total: -42.76 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Total: -69.41 -0.44 -69.85 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724903498.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.687 kcal
(2) G-P(sol) polarization free energy of solvation -69.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds