Wall clock time and date at job start Mon Mar 30 2020 04:13:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53000 * 109.47082 * 2 1
4 4 C 1.53001 * 109.46989 * 239.99571 * 2 1 3
5 5 N 1.46900 * 109.46868 * 119.99785 * 2 1 3
6 6 C 1.47851 * 110.99874 * 298.07451 * 5 2 1
7 7 C 1.55118 * 104.90324 * 146.24271 * 6 5 2
8 8 C 1.55142 * 101.55678 * 323.15723 * 7 6 5
9 9 F 1.39896 * 110.70641 * 276.96628 * 8 7 6
10 10 C 1.50703 * 110.70110 * 153.90857 * 8 7 6
11 11 O 1.21208 * 119.99879 * 253.79973 * 10 8 7
12 12 O 1.34311 * 120.00135 * 73.80743 * 10 8 7
13 13 C 1.34917 * 117.00198 * 179.97438 * 12 10 8
14 14 H 1.08002 * 119.99649 * 359.97438 * 13 12 10
15 15 C 1.38756 * 120.00048 * 179.97438 * 13 12 10
16 16 N 1.31431 * 120.00032 * 359.97438 * 15 13 12
17 17 Si 1.86807 * 119.99644 * 180.02562 * 15 13 12
18 18 H 1.48504 * 109.46978 * 90.00383 * 17 15 13
19 19 H 1.48499 * 109.46731 * 209.99852 * 17 15 13
20 20 H 1.48493 * 109.47215 * 329.99789 * 17 15 13
21 21 C 1.47442 * 111.00155 * 58.91724 * 5 2 1
22 22 H 1.08999 * 109.47348 * 306.01820 * 1 2 3
23 23 H 1.09001 * 109.46604 * 66.01310 * 1 2 3
24 24 H 1.08997 * 109.47231 * 186.01249 * 1 2 3
25 25 H 1.08994 * 109.46744 * 180.02562 * 3 2 1
26 26 H 1.09008 * 109.46877 * 299.99688 * 3 2 1
27 27 H 1.08999 * 109.47249 * 59.99790 * 3 2 1
28 28 H 1.09000 * 109.47199 * 300.00072 * 4 2 1
29 29 H 1.09002 * 109.46785 * 60.00287 * 4 2 1
30 30 H 1.09002 * 109.46616 * 179.97438 * 4 2 1
31 31 H 1.09005 * 110.37041 * 265.19116 * 6 5 2
32 32 H 1.08999 * 110.37410 * 27.53611 * 6 5 2
33 33 H 1.08996 * 111.14200 * 205.04736 * 7 6 5
34 34 H 1.08997 * 110.92378 * 81.16694 * 7 6 5
35 35 H 0.96999 * 119.99967 * 179.97438 * 16 15 13
36 36 H 1.08992 * 109.89101 * 117.33606 * 21 5 2
37 37 H 1.09002 * 110.02300 * 356.22359 * 21 5 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7214 -1.2492
5 7 2.0197 -0.6925 1.1995
6 6 1.5838 0.0043 2.4285
7 6 1.3592 -1.1243 3.4686
8 6 0.7699 -2.2522 2.5811
9 9 -0.6049 -2.0700 2.3978
10 6 1.0507 -3.6051 3.1827
11 8 1.8902 -4.3259 2.6880
12 8 0.3706 -4.0122 4.2670
13 6 0.6701 -5.2338 4.7550
14 1 1.4271 -5.8363 4.2749
15 6 0.0057 -5.7162 5.8735
16 7 -0.9152 -4.9827 6.4580
17 14 0.4210 -7.4074 6.5495
18 1 1.5075 -7.2856 7.5545
19 1 -0.7833 -7.9933 7.1910
20 1 0.8688 -8.2875 5.4405
21 6 1.5258 -2.0809 1.2467
22 1 -0.3634 0.6043 0.8312
23 1 -0.3632 0.4178 -0.9389
24 1 -0.3633 -1.0220 0.1076
25 1 3.1300 1.4424 -0.0005
26 1 1.6767 1.9563 -0.8901
27 1 1.6767 1.9564 0.8899
28 1 1.6767 -1.7490 -1.2491
29 1 1.6767 -0.2075 -2.1392
30 1 3.1301 -0.7209 -1.2494
31 1 2.3593 0.6891 2.7718
32 1 0.6530 0.5425 2.2498
33 1 0.6467 -0.8173 4.2342
34 1 2.3031 -1.4336 3.9174
35 1 -1.3799 -5.3201 7.2397
36 1 2.3653 -2.7747 1.2043
37 1 0.8501 -2.2653 0.4115
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000811445361.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:47
Heat of formation + Delta-G solvation = -119.707195 kcal
Electronic energy + Delta-G solvation = -20687.052140 eV
Core-core repulsion = 17379.467350 eV
Total energy + Delta-G solvation = -3307.584789 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.137 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-47.40176 -39.75020 -38.78986 -35.53140 -34.41994 -32.22951 -29.50235 -29.32138
-27.34484 -26.92920 -25.55984 -22.89830 -21.78027 -19.67907 -18.72135 -17.86864
-17.39231 -16.44663 -15.50923 -15.22983 -14.95821 -14.45149 -14.36832 -14.27102
-13.95724 -13.61794 -13.11875 -12.94921 -12.51694 -12.30529 -12.15427 -11.89464
-11.81902 -11.69839 -11.29762 -11.26505 -11.19354 -11.14933 -11.02825 -10.70692
-10.51412 -10.47749 -10.37735 -9.87432 -9.09386 -8.64979 -8.21279 -6.48066
-4.16460 3.00691 3.15101 3.21315 3.32106 3.69930 3.93605 4.29201
4.49024 4.53861 4.82050 4.87625 4.98499 5.09269 5.14896 5.28692
5.36621 5.52558 5.53683 5.62474 5.71890 5.79753 5.81073 5.83397
5.95094 6.01963 6.07517 6.16818 6.24738 6.29061 6.35409 6.65257
6.96118 7.14142 7.31441 7.85174 8.54765 8.99214 9.71613 10.68868
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.045823 B = 0.005090 C = 0.004940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 610.905161 B = 5499.851604 C = 5666.146816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.092 3.908
3 C -0.136 4.136
4 C -0.140 4.140
5 N -0.511 5.511
6 C 0.038 3.962
7 C -0.140 4.140
8 C 0.121 3.879
9 F -0.188 7.188
10 C 0.383 3.617
11 O -0.540 6.540
12 O -0.197 6.197
13 C -0.386 4.386
14 H 0.098 0.902
15 C 0.045 3.955
16 N -0.857 5.857
17 Si 0.946 3.054
18 H -0.272 1.272
19 H -0.277 1.277
20 H -0.265 1.265
21 C 0.031 3.969
22 H 0.060 0.940
23 H 0.060 0.940
24 H 0.065 0.935
25 H 0.063 0.937
26 H 0.058 0.942
27 H 0.055 0.945
28 H 0.057 0.943
29 H 0.058 0.942
30 H 0.064 0.936
31 H 0.087 0.913
32 H 0.059 0.941
33 H 0.097 0.903
34 H 0.096 0.904
35 H 0.272 0.728
36 H 0.116 0.884
37 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.345 11.189 -9.818 15.257
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C 0.003 3.997
3 C -0.194 4.194
4 C -0.197 4.197
5 N -0.235 5.235
6 C -0.090 4.090
7 C -0.178 4.178
8 C 0.100 3.900
9 F -0.169 7.169
10 C 0.228 3.772
11 O -0.438 6.438
12 O -0.102 6.102
13 C -0.462 4.462
14 H 0.116 0.884
15 C -0.161 4.161
16 N -0.493 5.493
17 Si 0.770 3.230
18 H -0.197 1.197
19 H -0.202 1.202
20 H -0.190 1.190
21 C -0.097 4.097
22 H 0.079 0.921
23 H 0.079 0.921
24 H 0.084 0.916
25 H 0.082 0.918
26 H 0.077 0.923
27 H 0.074 0.926
28 H 0.076 0.924
29 H 0.077 0.923
30 H 0.083 0.917
31 H 0.105 0.895
32 H 0.077 0.923
33 H 0.115 0.885
34 H 0.115 0.885
35 H 0.081 0.919
36 H 0.134 0.866
37 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 3.902 11.001 -9.786 15.232
hybrid contribution -0.974 -0.802 0.439 1.336
sum 2.928 10.199 -9.347 14.141
Atomic orbital electron populations
1.22585 0.96644 1.03078 1.02149 1.21268 0.92720 0.94665 0.91088
1.21847 1.01816 0.94151 1.01594 1.21894 1.01949 1.00308 0.95589
1.64019 1.56598 1.01195 1.01675 1.23199 1.00032 0.96561 0.89173
1.23307 1.03116 0.93503 0.97859 1.21684 0.77598 0.93337 0.97375
1.92884 1.31665 1.96130 1.96183 1.22883 0.83264 0.88296 0.82801
1.90561 1.35087 1.55192 1.62922 1.83904 1.54495 1.34800 1.37028
1.21317 1.22890 0.90479 1.11470 0.88409 1.25394 0.95233 0.99991
0.95438 1.70002 1.22261 1.37157 1.19919 0.85641 0.78183 0.80000
0.79197 1.19720 1.20204 1.18959 1.23433 1.00407 0.91624 0.94234
0.92124 0.92139 0.91636 0.91783 0.92343 0.92569 0.92355 0.92331
0.91690 0.89477 0.92333 0.88478 0.88496 0.91860 0.86607 0.90550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.22 7.88 37.16 0.29 -1.93 16
2 C 0.09 1.08 0.67 -131.60 -0.09 1.00 16
3 C -0.14 -1.33 8.34 37.16 0.31 -1.02 16
4 C -0.14 -1.52 8.36 37.16 0.31 -1.21 16
5 N -0.51 -7.26 5.00 -215.50 -1.08 -8.34 16
6 C 0.04 0.51 5.14 -2.18 -0.01 0.50 16
7 C -0.14 -2.35 6.33 -24.48 -0.16 -2.50 16
8 C 0.12 2.41 1.52 -89.95 -0.14 2.28 16
9 F -0.19 -3.92 16.38 2.25 0.04 -3.89 16
10 C 0.38 9.73 6.96 36.01 0.25 9.98 16
11 O -0.54 -14.47 14.64 -19.05 -0.28 -14.75 16
12 O -0.20 -5.76 9.75 -20.69 -0.20 -5.97 16
13 C -0.39 -11.48 9.65 30.92 0.30 -11.19 16
14 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16
15 C 0.04 1.26 5.49 -17.53 -0.10 1.16 16
16 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16
17 Si 0.95 21.19 29.55 -169.99 -5.02 16.17 16
18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16
19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
21 C 0.03 0.52 4.80 -2.84 -0.01 0.51 16
22 H 0.06 0.73 6.31 -51.93 -0.33 0.40 16
23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
24 H 0.06 0.91 5.54 -51.93 -0.29 0.62 16
25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16
27 H 0.06 0.53 6.97 -51.93 -0.36 0.17 16
28 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16
29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.06 0.76 5.48 -51.93 -0.28 0.47 16
33 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16
34 H 0.10 1.65 8.04 -51.93 -0.42 1.23 16
35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
36 H 0.12 2.16 6.73 -51.93 -0.35 1.81 16
37 H 0.08 1.23 4.77 -51.93 -0.25 0.99 16
LS Contribution 298.02 15.07 4.49 4.49
Total: -1.00 -32.09 298.02 -5.40 -37.49
By element:
Atomic # 1 Polarization: 6.71 SS G_CDS: -5.07 Total: 1.64 kcal
Atomic # 6 Polarization: -3.38 SS G_CDS: 0.96 Total: -2.42 kcal
Atomic # 7 Polarization: -32.45 SS G_CDS: -0.32 Total: -32.76 kcal
Atomic # 8 Polarization: -20.24 SS G_CDS: -0.48 Total: -20.72 kcal
Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.89 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -32.09 -5.40 -37.49 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000811445361.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.216 kcal
(2) G-P(sol) polarization free energy of solvation -32.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds