Wall clock time and date at job start Mon Mar 30 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 C 1.53001 * 109.46989 * 239.99571 * 2 1 3 5 5 N 1.46900 * 109.46868 * 119.99785 * 2 1 3 6 6 C 1.47851 * 110.99874 * 298.07451 * 5 2 1 7 7 C 1.55118 * 104.90324 * 146.24271 * 6 5 2 8 8 C 1.55142 * 101.55678 * 323.15723 * 7 6 5 9 9 F 1.39896 * 110.70641 * 276.96628 * 8 7 6 10 10 C 1.50703 * 110.70110 * 153.90857 * 8 7 6 11 11 O 1.21208 * 119.99879 * 253.79973 * 10 8 7 12 12 O 1.34311 * 120.00135 * 73.80743 * 10 8 7 13 13 C 1.34917 * 117.00198 * 179.97438 * 12 10 8 14 14 H 1.08002 * 119.99649 * 359.97438 * 13 12 10 15 15 C 1.38756 * 120.00048 * 179.97438 * 13 12 10 16 16 N 1.31431 * 120.00032 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99644 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46978 * 90.00383 * 17 15 13 19 19 H 1.48499 * 109.46731 * 209.99852 * 17 15 13 20 20 H 1.48493 * 109.47215 * 329.99789 * 17 15 13 21 21 C 1.47442 * 111.00155 * 58.91724 * 5 2 1 22 22 H 1.08999 * 109.47348 * 306.01820 * 1 2 3 23 23 H 1.09001 * 109.46604 * 66.01310 * 1 2 3 24 24 H 1.08997 * 109.47231 * 186.01249 * 1 2 3 25 25 H 1.08994 * 109.46744 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.46877 * 299.99688 * 3 2 1 27 27 H 1.08999 * 109.47249 * 59.99790 * 3 2 1 28 28 H 1.09000 * 109.47199 * 300.00072 * 4 2 1 29 29 H 1.09002 * 109.46785 * 60.00287 * 4 2 1 30 30 H 1.09002 * 109.46616 * 179.97438 * 4 2 1 31 31 H 1.09005 * 110.37041 * 265.19116 * 6 5 2 32 32 H 1.08999 * 110.37410 * 27.53611 * 6 5 2 33 33 H 1.08996 * 111.14200 * 205.04736 * 7 6 5 34 34 H 1.08997 * 110.92378 * 81.16694 * 7 6 5 35 35 H 0.96999 * 119.99967 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.89101 * 117.33606 * 21 5 2 37 37 H 1.09002 * 110.02300 * 356.22359 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0197 -0.6925 1.1995 6 6 1.5838 0.0043 2.4285 7 6 1.3592 -1.1243 3.4686 8 6 0.7699 -2.2522 2.5811 9 9 -0.6049 -2.0700 2.3978 10 6 1.0507 -3.6051 3.1827 11 8 1.8902 -4.3259 2.6880 12 8 0.3706 -4.0122 4.2670 13 6 0.6701 -5.2338 4.7550 14 1 1.4271 -5.8363 4.2749 15 6 0.0057 -5.7162 5.8735 16 7 -0.9152 -4.9827 6.4580 17 14 0.4210 -7.4074 6.5495 18 1 1.5075 -7.2856 7.5545 19 1 -0.7833 -7.9933 7.1910 20 1 0.8688 -8.2875 5.4405 21 6 1.5258 -2.0809 1.2467 22 1 -0.3634 0.6043 0.8312 23 1 -0.3632 0.4178 -0.9389 24 1 -0.3633 -1.0220 0.1076 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6767 -1.7490 -1.2491 29 1 1.6767 -0.2075 -2.1392 30 1 3.1301 -0.7209 -1.2494 31 1 2.3593 0.6891 2.7718 32 1 0.6530 0.5425 2.2498 33 1 0.6467 -0.8173 4.2342 34 1 2.3031 -1.4336 3.9174 35 1 -1.3799 -5.3201 7.2397 36 1 2.3653 -2.7747 1.2043 37 1 0.8501 -2.2653 0.4115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811445361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:47 Heat of formation + Delta-G solvation = -119.707195 kcal Electronic energy + Delta-G solvation = -20687.052140 eV Core-core repulsion = 17379.467350 eV Total energy + Delta-G solvation = -3307.584789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.40176 -39.75020 -38.78986 -35.53140 -34.41994 -32.22951 -29.50235 -29.32138 -27.34484 -26.92920 -25.55984 -22.89830 -21.78027 -19.67907 -18.72135 -17.86864 -17.39231 -16.44663 -15.50923 -15.22983 -14.95821 -14.45149 -14.36832 -14.27102 -13.95724 -13.61794 -13.11875 -12.94921 -12.51694 -12.30529 -12.15427 -11.89464 -11.81902 -11.69839 -11.29762 -11.26505 -11.19354 -11.14933 -11.02825 -10.70692 -10.51412 -10.47749 -10.37735 -9.87432 -9.09386 -8.64979 -8.21279 -6.48066 -4.16460 3.00691 3.15101 3.21315 3.32106 3.69930 3.93605 4.29201 4.49024 4.53861 4.82050 4.87625 4.98499 5.09269 5.14896 5.28692 5.36621 5.52558 5.53683 5.62474 5.71890 5.79753 5.81073 5.83397 5.95094 6.01963 6.07517 6.16818 6.24738 6.29061 6.35409 6.65257 6.96118 7.14142 7.31441 7.85174 8.54765 8.99214 9.71613 10.68868 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.045823 B = 0.005090 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.905161 B = 5499.851604 C = 5666.146816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.092 3.908 3 C -0.136 4.136 4 C -0.140 4.140 5 N -0.511 5.511 6 C 0.038 3.962 7 C -0.140 4.140 8 C 0.121 3.879 9 F -0.188 7.188 10 C 0.383 3.617 11 O -0.540 6.540 12 O -0.197 6.197 13 C -0.386 4.386 14 H 0.098 0.902 15 C 0.045 3.955 16 N -0.857 5.857 17 Si 0.946 3.054 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.265 1.265 21 C 0.031 3.969 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.272 0.728 36 H 0.116 0.884 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 11.189 -9.818 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.003 3.997 3 C -0.194 4.194 4 C -0.197 4.197 5 N -0.235 5.235 6 C -0.090 4.090 7 C -0.178 4.178 8 C 0.100 3.900 9 F -0.169 7.169 10 C 0.228 3.772 11 O -0.438 6.438 12 O -0.102 6.102 13 C -0.462 4.462 14 H 0.116 0.884 15 C -0.161 4.161 16 N -0.493 5.493 17 Si 0.770 3.230 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.097 4.097 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.902 11.001 -9.786 15.232 hybrid contribution -0.974 -0.802 0.439 1.336 sum 2.928 10.199 -9.347 14.141 Atomic orbital electron populations 1.22585 0.96644 1.03078 1.02149 1.21268 0.92720 0.94665 0.91088 1.21847 1.01816 0.94151 1.01594 1.21894 1.01949 1.00308 0.95589 1.64019 1.56598 1.01195 1.01675 1.23199 1.00032 0.96561 0.89173 1.23307 1.03116 0.93503 0.97859 1.21684 0.77598 0.93337 0.97375 1.92884 1.31665 1.96130 1.96183 1.22883 0.83264 0.88296 0.82801 1.90561 1.35087 1.55192 1.62922 1.83904 1.54495 1.34800 1.37028 1.21317 1.22890 0.90479 1.11470 0.88409 1.25394 0.95233 0.99991 0.95438 1.70002 1.22261 1.37157 1.19919 0.85641 0.78183 0.80000 0.79197 1.19720 1.20204 1.18959 1.23433 1.00407 0.91624 0.94234 0.92124 0.92139 0.91636 0.91783 0.92343 0.92569 0.92355 0.92331 0.91690 0.89477 0.92333 0.88478 0.88496 0.91860 0.86607 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 7.88 37.16 0.29 -1.93 16 2 C 0.09 1.08 0.67 -131.60 -0.09 1.00 16 3 C -0.14 -1.33 8.34 37.16 0.31 -1.02 16 4 C -0.14 -1.52 8.36 37.16 0.31 -1.21 16 5 N -0.51 -7.26 5.00 -215.50 -1.08 -8.34 16 6 C 0.04 0.51 5.14 -2.18 -0.01 0.50 16 7 C -0.14 -2.35 6.33 -24.48 -0.16 -2.50 16 8 C 0.12 2.41 1.52 -89.95 -0.14 2.28 16 9 F -0.19 -3.92 16.38 2.25 0.04 -3.89 16 10 C 0.38 9.73 6.96 36.01 0.25 9.98 16 11 O -0.54 -14.47 14.64 -19.05 -0.28 -14.75 16 12 O -0.20 -5.76 9.75 -20.69 -0.20 -5.97 16 13 C -0.39 -11.48 9.65 30.92 0.30 -11.19 16 14 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 15 C 0.04 1.26 5.49 -17.53 -0.10 1.16 16 16 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 17 Si 0.95 21.19 29.55 -169.99 -5.02 16.17 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C 0.03 0.52 4.80 -2.84 -0.01 0.51 16 22 H 0.06 0.73 6.31 -51.93 -0.33 0.40 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.91 5.54 -51.93 -0.29 0.62 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 27 H 0.06 0.53 6.97 -51.93 -0.36 0.17 16 28 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.76 5.48 -51.93 -0.28 0.47 16 33 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 34 H 0.10 1.65 8.04 -51.93 -0.42 1.23 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 2.16 6.73 -51.93 -0.35 1.81 16 37 H 0.08 1.23 4.77 -51.93 -0.25 0.99 16 LS Contribution 298.02 15.07 4.49 4.49 Total: -1.00 -32.09 298.02 -5.40 -37.49 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.07 Total: 1.64 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 0.96 Total: -2.42 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: -0.32 Total: -32.76 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.48 Total: -20.72 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.09 -5.40 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811445361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.216 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds