Wall clock time and date at job start Mon Mar 30 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 C 1.53001 * 109.46989 * 239.99571 * 2 1 3 5 5 N 1.46900 * 109.46868 * 119.99785 * 2 1 3 6 6 C 1.47851 * 110.99874 * 298.07451 * 5 2 1 7 7 C 1.55118 * 104.90324 * 146.24271 * 6 5 2 8 8 C 1.55142 * 101.55678 * 323.15723 * 7 6 5 9 9 F 1.39896 * 110.70641 * 276.96628 * 8 7 6 10 10 C 1.50703 * 110.70110 * 153.90857 * 8 7 6 11 11 O 1.21208 * 119.99879 * 253.79973 * 10 8 7 12 12 O 1.34311 * 120.00135 * 73.80743 * 10 8 7 13 13 C 1.34917 * 117.00198 * 179.97438 * 12 10 8 14 14 H 1.08002 * 119.99649 * 359.97438 * 13 12 10 15 15 C 1.38756 * 120.00048 * 179.97438 * 13 12 10 16 16 N 1.31431 * 120.00032 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99644 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46978 * 90.00383 * 17 15 13 19 19 H 1.48499 * 109.46731 * 209.99852 * 17 15 13 20 20 H 1.48493 * 109.47215 * 329.99789 * 17 15 13 21 21 C 1.47442 * 111.00155 * 58.91724 * 5 2 1 22 22 H 1.08999 * 109.47348 * 306.01820 * 1 2 3 23 23 H 1.09001 * 109.46604 * 66.01310 * 1 2 3 24 24 H 1.08997 * 109.47231 * 186.01249 * 1 2 3 25 25 H 1.08994 * 109.46744 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.46877 * 299.99688 * 3 2 1 27 27 H 1.08999 * 109.47249 * 59.99790 * 3 2 1 28 28 H 1.09000 * 109.47199 * 300.00072 * 4 2 1 29 29 H 1.09002 * 109.46785 * 60.00287 * 4 2 1 30 30 H 1.09002 * 109.46616 * 179.97438 * 4 2 1 31 31 H 1.09005 * 110.37041 * 265.19116 * 6 5 2 32 32 H 1.08999 * 110.37410 * 27.53611 * 6 5 2 33 33 H 1.08996 * 111.14200 * 205.04736 * 7 6 5 34 34 H 1.08997 * 110.92378 * 81.16694 * 7 6 5 35 35 H 0.96999 * 119.99967 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.89101 * 117.33606 * 21 5 2 37 37 H 1.09002 * 110.02300 * 356.22359 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0197 -0.6925 1.1995 6 6 1.5838 0.0043 2.4285 7 6 1.3592 -1.1243 3.4686 8 6 0.7699 -2.2522 2.5811 9 9 -0.6049 -2.0700 2.3978 10 6 1.0507 -3.6051 3.1827 11 8 1.8902 -4.3259 2.6880 12 8 0.3706 -4.0122 4.2670 13 6 0.6701 -5.2338 4.7550 14 1 1.4271 -5.8363 4.2749 15 6 0.0057 -5.7162 5.8735 16 7 -0.9152 -4.9827 6.4580 17 14 0.4210 -7.4074 6.5495 18 1 1.5075 -7.2856 7.5545 19 1 -0.7833 -7.9933 7.1910 20 1 0.8688 -8.2875 5.4405 21 6 1.5258 -2.0809 1.2467 22 1 -0.3634 0.6043 0.8312 23 1 -0.3632 0.4178 -0.9389 24 1 -0.3633 -1.0220 0.1076 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6767 -1.7490 -1.2491 29 1 1.6767 -0.2075 -2.1392 30 1 3.1301 -0.7209 -1.2494 31 1 2.3593 0.6891 2.7718 32 1 0.6530 0.5425 2.2498 33 1 0.6467 -0.8173 4.2342 34 1 2.3031 -1.4336 3.9174 35 1 -1.3799 -5.3201 7.2397 36 1 2.3653 -2.7747 1.2043 37 1 0.8501 -2.2653 0.4115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811445361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:47 Heat of formation + Delta-G solvation = -141.049772 kcal Electronic energy + Delta-G solvation = -20687.977623 eV Core-core repulsion = 17379.467350 eV Total energy + Delta-G solvation = -3308.510273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.07977 -41.34466 -40.44222 -37.54475 -35.72247 -34.41018 -30.72347 -30.69016 -28.25128 -28.03351 -27.50411 -24.55805 -23.05332 -21.43859 -20.04328 -19.78664 -19.28225 -17.71100 -17.38831 -16.92917 -16.44436 -16.19111 -15.99539 -15.57179 -15.28522 -14.99111 -14.81796 -14.11169 -13.96542 -13.73847 -13.35817 -13.27476 -13.11561 -12.96454 -12.71473 -12.63245 -12.48534 -12.32010 -12.31293 -12.29133 -12.12505 -12.03973 -11.81073 -11.49547 -11.07508 -10.78026 -9.37861 -8.62355 -6.44269 1.08271 1.31022 1.47851 1.50886 1.93151 2.37101 2.79768 2.87071 3.06122 3.09198 3.54226 3.82620 3.93019 4.02318 4.14278 4.24050 4.31033 4.44394 4.64787 4.68691 4.72881 4.79892 4.86197 4.89861 4.92449 4.96262 5.01988 5.04782 5.07078 5.24988 5.34008 5.45441 5.70741 5.81296 6.08307 6.41852 6.80591 7.56198 8.57544 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.045823 B = 0.005090 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.905161 B = 5499.851604 C = 5666.146816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 C -0.132 4.132 4 C -0.140 4.140 5 N -0.511 5.511 6 C 0.048 3.952 7 C -0.138 4.138 8 C 0.117 3.883 9 F -0.193 7.193 10 C 0.379 3.621 11 O -0.559 6.559 12 O -0.228 6.228 13 C -0.428 4.428 14 H 0.087 0.913 15 C 0.000 4.000 16 N -0.896 5.896 17 Si 1.022 2.978 18 H -0.256 1.256 19 H -0.258 1.258 20 H -0.262 1.262 21 C 0.045 3.955 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.282 0.718 36 H 0.096 0.904 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 12.301 -10.309 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.002 4.002 3 C -0.189 4.189 4 C -0.197 4.197 5 N -0.235 5.235 6 C -0.079 4.079 7 C -0.177 4.177 8 C 0.097 3.903 9 F -0.174 7.174 10 C 0.225 3.775 11 O -0.457 6.457 12 O -0.135 6.135 13 C -0.503 4.503 14 H 0.104 0.896 15 C -0.202 4.202 16 N -0.533 5.533 17 Si 0.840 3.160 18 H -0.180 1.180 19 H -0.182 1.182 20 H -0.186 1.186 21 C -0.084 4.084 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.321 12.147 -10.296 16.499 hybrid contribution -1.102 -1.084 0.510 1.627 sum 3.220 11.063 -9.786 15.117 Atomic orbital electron populations 1.22566 0.96699 1.01670 1.03304 1.21477 0.92719 0.95910 0.90099 1.21826 1.01906 0.92363 1.02837 1.21910 1.01963 0.99658 0.96167 1.64093 1.56542 0.99853 1.03057 1.23251 1.01667 0.95388 0.87611 1.23362 1.02476 0.93383 0.98450 1.21944 0.77762 0.91091 0.99549 1.92866 1.32292 1.95916 1.96306 1.24068 0.82008 0.89902 0.81515 1.90524 1.35668 1.56400 1.63075 1.83930 1.55860 1.35038 1.38701 1.21572 1.24322 0.91302 1.13147 0.89561 1.26658 0.94317 1.04477 0.94711 1.70082 1.23091 1.39484 1.20612 0.84578 0.78963 0.73898 0.78605 1.18033 1.18240 1.18623 1.23241 0.99158 0.93428 0.92537 0.92177 0.90032 0.94030 0.91638 0.90406 0.92105 0.93858 0.90083 0.91684 0.86704 0.91110 0.88445 0.89045 0.90851 0.88617 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 7.88 71.98 0.57 -3.43 16 2 C 0.09 1.83 0.67 3.53 0.00 1.83 16 3 C -0.13 -2.09 8.34 71.98 0.60 -1.49 16 4 C -0.14 -2.74 8.36 71.98 0.60 -2.14 16 5 N -0.51 -13.72 5.00 -835.70 -4.18 -17.90 16 6 C 0.05 1.19 5.14 86.85 0.45 1.63 16 7 C -0.14 -4.62 6.33 32.05 0.20 -4.42 16 8 C 0.12 4.77 1.52 -10.36 -0.02 4.75 16 9 F -0.19 -8.20 16.38 44.97 0.74 -7.46 16 10 C 0.38 20.07 6.96 71.24 0.50 20.56 16 11 O -0.56 -31.19 14.64 20.78 0.30 -30.89 16 12 O -0.23 -13.98 9.75 14.90 0.15 -13.83 16 13 C -0.43 -26.45 9.65 67.94 0.66 -25.79 16 14 H 0.09 5.35 6.86 -2.91 -0.02 5.33 16 15 C 0.00 -0.01 5.49 84.88 0.47 0.45 16 16 N -0.90 -53.46 13.67 21.62 0.30 -53.16 16 17 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 C 0.04 1.53 4.80 86.65 0.42 1.94 16 22 H 0.06 1.30 6.31 -2.39 -0.02 1.29 16 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.04 1.10 5.54 -2.39 -0.01 1.09 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.06 0.92 6.97 -2.39 -0.02 0.90 16 28 H 0.04 0.97 6.57 -2.39 -0.02 0.95 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.07 1.63 5.48 -2.39 -0.01 1.62 16 33 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.09 3.13 8.04 -2.39 -0.02 3.11 16 35 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.10 3.66 6.73 -2.39 -0.02 3.64 16 37 H 0.08 2.68 4.77 -2.39 -0.01 2.67 16 Total: -1.00 -71.58 298.02 4.84 -66.74 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.07 Total: 17.22 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 4.44 Total: -6.09 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -3.88 Total: -71.06 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: 0.45 Total: -44.72 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.74 Total: -7.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.58 4.84 -66.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811445361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.314 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds