Wall clock time and date at job start Mon Mar 30 2020 04:13:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53000 * 109.47082 * 2 1
4 4 C 1.53001 * 109.46989 * 239.99571 * 2 1 3
5 5 N 1.46900 * 109.46868 * 119.99785 * 2 1 3
6 6 C 1.47851 * 110.99874 * 298.07451 * 5 2 1
7 7 C 1.55118 * 104.90324 * 146.24271 * 6 5 2
8 8 C 1.55142 * 101.55678 * 323.15723 * 7 6 5
9 9 F 1.39896 * 110.70641 * 276.96628 * 8 7 6
10 10 C 1.50703 * 110.70110 * 153.90857 * 8 7 6
11 11 O 1.21208 * 119.99879 * 253.79973 * 10 8 7
12 12 O 1.34311 * 120.00135 * 73.80743 * 10 8 7
13 13 C 1.34917 * 117.00198 * 179.97438 * 12 10 8
14 14 H 1.08002 * 119.99649 * 359.97438 * 13 12 10
15 15 C 1.38756 * 120.00048 * 179.97438 * 13 12 10
16 16 N 1.31431 * 120.00032 * 359.97438 * 15 13 12
17 17 Si 1.86807 * 119.99644 * 180.02562 * 15 13 12
18 18 H 1.48504 * 109.46978 * 90.00383 * 17 15 13
19 19 H 1.48499 * 109.46731 * 209.99852 * 17 15 13
20 20 H 1.48493 * 109.47215 * 329.99789 * 17 15 13
21 21 C 1.47442 * 111.00155 * 58.91724 * 5 2 1
22 22 H 1.08999 * 109.47348 * 306.01820 * 1 2 3
23 23 H 1.09001 * 109.46604 * 66.01310 * 1 2 3
24 24 H 1.08997 * 109.47231 * 186.01249 * 1 2 3
25 25 H 1.08994 * 109.46744 * 180.02562 * 3 2 1
26 26 H 1.09008 * 109.46877 * 299.99688 * 3 2 1
27 27 H 1.08999 * 109.47249 * 59.99790 * 3 2 1
28 28 H 1.09000 * 109.47199 * 300.00072 * 4 2 1
29 29 H 1.09002 * 109.46785 * 60.00287 * 4 2 1
30 30 H 1.09002 * 109.46616 * 179.97438 * 4 2 1
31 31 H 1.09005 * 110.37041 * 265.19116 * 6 5 2
32 32 H 1.08999 * 110.37410 * 27.53611 * 6 5 2
33 33 H 1.08996 * 111.14200 * 205.04736 * 7 6 5
34 34 H 1.08997 * 110.92378 * 81.16694 * 7 6 5
35 35 H 0.96999 * 119.99967 * 179.97438 * 16 15 13
36 36 H 1.08992 * 109.89101 * 117.33606 * 21 5 2
37 37 H 1.09002 * 110.02300 * 356.22359 * 21 5 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7214 -1.2492
5 7 2.0197 -0.6925 1.1995
6 6 1.5838 0.0043 2.4285
7 6 1.3592 -1.1243 3.4686
8 6 0.7699 -2.2522 2.5811
9 9 -0.6049 -2.0700 2.3978
10 6 1.0507 -3.6051 3.1827
11 8 1.8902 -4.3259 2.6880
12 8 0.3706 -4.0122 4.2670
13 6 0.6701 -5.2338 4.7550
14 1 1.4271 -5.8363 4.2749
15 6 0.0057 -5.7162 5.8735
16 7 -0.9152 -4.9827 6.4580
17 14 0.4210 -7.4074 6.5495
18 1 1.5075 -7.2856 7.5545
19 1 -0.7833 -7.9933 7.1910
20 1 0.8688 -8.2875 5.4405
21 6 1.5258 -2.0809 1.2467
22 1 -0.3634 0.6043 0.8312
23 1 -0.3632 0.4178 -0.9389
24 1 -0.3633 -1.0220 0.1076
25 1 3.1300 1.4424 -0.0005
26 1 1.6767 1.9563 -0.8901
27 1 1.6767 1.9564 0.8899
28 1 1.6767 -1.7490 -1.2491
29 1 1.6767 -0.2075 -2.1392
30 1 3.1301 -0.7209 -1.2494
31 1 2.3593 0.6891 2.7718
32 1 0.6530 0.5425 2.2498
33 1 0.6467 -0.8173 4.2342
34 1 2.3031 -1.4336 3.9174
35 1 -1.3799 -5.3201 7.2397
36 1 2.3653 -2.7747 1.2043
37 1 0.8501 -2.2653 0.4115
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000811445361.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:47
Heat of formation + Delta-G solvation = -141.049772 kcal
Electronic energy + Delta-G solvation = -20687.977623 eV
Core-core repulsion = 17379.467350 eV
Total energy + Delta-G solvation = -3308.510273 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.137 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-49.07977 -41.34466 -40.44222 -37.54475 -35.72247 -34.41018 -30.72347 -30.69016
-28.25128 -28.03351 -27.50411 -24.55805 -23.05332 -21.43859 -20.04328 -19.78664
-19.28225 -17.71100 -17.38831 -16.92917 -16.44436 -16.19111 -15.99539 -15.57179
-15.28522 -14.99111 -14.81796 -14.11169 -13.96542 -13.73847 -13.35817 -13.27476
-13.11561 -12.96454 -12.71473 -12.63245 -12.48534 -12.32010 -12.31293 -12.29133
-12.12505 -12.03973 -11.81073 -11.49547 -11.07508 -10.78026 -9.37861 -8.62355
-6.44269 1.08271 1.31022 1.47851 1.50886 1.93151 2.37101 2.79768
2.87071 3.06122 3.09198 3.54226 3.82620 3.93019 4.02318 4.14278
4.24050 4.31033 4.44394 4.64787 4.68691 4.72881 4.79892 4.86197
4.89861 4.92449 4.96262 5.01988 5.04782 5.07078 5.24988 5.34008
5.45441 5.70741 5.81296 6.08307 6.41852 6.80591 7.56198 8.57544
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.045823 B = 0.005090 C = 0.004940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 610.905161 B = 5499.851604 C = 5666.146816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.087 3.913
3 C -0.132 4.132
4 C -0.140 4.140
5 N -0.511 5.511
6 C 0.048 3.952
7 C -0.138 4.138
8 C 0.117 3.883
9 F -0.193 7.193
10 C 0.379 3.621
11 O -0.559 6.559
12 O -0.228 6.228
13 C -0.428 4.428
14 H 0.087 0.913
15 C 0.000 4.000
16 N -0.896 5.896
17 Si 1.022 2.978
18 H -0.256 1.256
19 H -0.258 1.258
20 H -0.262 1.262
21 C 0.045 3.955
22 H 0.059 0.941
23 H 0.081 0.919
24 H 0.041 0.959
25 H 0.065 0.935
26 H 0.077 0.923
27 H 0.060 0.940
28 H 0.042 0.958
29 H 0.080 0.920
30 H 0.064 0.936
31 H 0.115 0.885
32 H 0.071 0.929
33 H 0.097 0.903
34 H 0.091 0.909
35 H 0.282 0.718
36 H 0.096 0.904
37 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.763 12.301 -10.309 16.485
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.002 4.002
3 C -0.189 4.189
4 C -0.197 4.197
5 N -0.235 5.235
6 C -0.079 4.079
7 C -0.177 4.177
8 C 0.097 3.903
9 F -0.174 7.174
10 C 0.225 3.775
11 O -0.457 6.457
12 O -0.135 6.135
13 C -0.503 4.503
14 H 0.104 0.896
15 C -0.202 4.202
16 N -0.533 5.533
17 Si 0.840 3.160
18 H -0.180 1.180
19 H -0.182 1.182
20 H -0.186 1.186
21 C -0.084 4.084
22 H 0.078 0.922
23 H 0.100 0.900
24 H 0.060 0.940
25 H 0.084 0.916
26 H 0.096 0.904
27 H 0.079 0.921
28 H 0.061 0.939
29 H 0.099 0.901
30 H 0.083 0.917
31 H 0.133 0.867
32 H 0.089 0.911
33 H 0.116 0.884
34 H 0.110 0.890
35 H 0.091 0.909
36 H 0.114 0.886
37 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 4.321 12.147 -10.296 16.499
hybrid contribution -1.102 -1.084 0.510 1.627
sum 3.220 11.063 -9.786 15.117
Atomic orbital electron populations
1.22566 0.96699 1.01670 1.03304 1.21477 0.92719 0.95910 0.90099
1.21826 1.01906 0.92363 1.02837 1.21910 1.01963 0.99658 0.96167
1.64093 1.56542 0.99853 1.03057 1.23251 1.01667 0.95388 0.87611
1.23362 1.02476 0.93383 0.98450 1.21944 0.77762 0.91091 0.99549
1.92866 1.32292 1.95916 1.96306 1.24068 0.82008 0.89902 0.81515
1.90524 1.35668 1.56400 1.63075 1.83930 1.55860 1.35038 1.38701
1.21572 1.24322 0.91302 1.13147 0.89561 1.26658 0.94317 1.04477
0.94711 1.70082 1.23091 1.39484 1.20612 0.84578 0.78963 0.73898
0.78605 1.18033 1.18240 1.18623 1.23241 0.99158 0.93428 0.92537
0.92177 0.90032 0.94030 0.91638 0.90406 0.92105 0.93858 0.90083
0.91684 0.86704 0.91110 0.88445 0.89045 0.90851 0.88617 0.89953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.00 7.88 71.98 0.57 -3.43 16
2 C 0.09 1.83 0.67 3.53 0.00 1.83 16
3 C -0.13 -2.09 8.34 71.98 0.60 -1.49 16
4 C -0.14 -2.74 8.36 71.98 0.60 -2.14 16
5 N -0.51 -13.72 5.00 -835.70 -4.18 -17.90 16
6 C 0.05 1.19 5.14 86.85 0.45 1.63 16
7 C -0.14 -4.62 6.33 32.05 0.20 -4.42 16
8 C 0.12 4.77 1.52 -10.36 -0.02 4.75 16
9 F -0.19 -8.20 16.38 44.97 0.74 -7.46 16
10 C 0.38 20.07 6.96 71.24 0.50 20.56 16
11 O -0.56 -31.19 14.64 20.78 0.30 -30.89 16
12 O -0.23 -13.98 9.75 14.90 0.15 -13.83 16
13 C -0.43 -26.45 9.65 67.94 0.66 -25.79 16
14 H 0.09 5.35 6.86 -2.91 -0.02 5.33 16
15 C 0.00 -0.01 5.49 84.88 0.47 0.45 16
16 N -0.90 -53.46 13.67 21.62 0.30 -53.16 16
17 Si 1.02 43.34 29.55 68.60 2.03 45.37 16
18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16
19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16
20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
21 C 0.04 1.53 4.80 86.65 0.42 1.94 16
22 H 0.06 1.30 6.31 -2.39 -0.02 1.29 16
23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
24 H 0.04 1.10 5.54 -2.39 -0.01 1.09 16
25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
26 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16
27 H 0.06 0.92 6.97 -2.39 -0.02 0.90 16
28 H 0.04 0.97 6.57 -2.39 -0.02 0.95 16
29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16
32 H 0.07 1.63 5.48 -2.39 -0.01 1.62 16
33 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16
34 H 0.09 3.13 8.04 -2.39 -0.02 3.11 16
35 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16
36 H 0.10 3.66 6.73 -2.39 -0.02 3.64 16
37 H 0.08 2.68 4.77 -2.39 -0.01 2.67 16
Total: -1.00 -71.58 298.02 4.84 -66.74
By element:
Atomic # 1 Polarization: 16.15 SS G_CDS: 1.07 Total: 17.22 kcal
Atomic # 6 Polarization: -10.52 SS G_CDS: 4.44 Total: -6.09 kcal
Atomic # 7 Polarization: -67.18 SS G_CDS: -3.88 Total: -71.06 kcal
Atomic # 8 Polarization: -45.17 SS G_CDS: 0.45 Total: -44.72 kcal
Atomic # 9 Polarization: -8.20 SS G_CDS: 0.74 Total: -7.46 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -71.58 4.84 -66.74 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000811445361.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.314 kcal
(2) G-P(sol) polarization free energy of solvation -71.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.895 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.050 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds