Wall clock time and date at job start Mon Mar 30 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99695 * 2 1 4 4 C 1.50693 * 109.47548 * 66.04376 * 3 2 1 5 5 H 1.08004 * 119.99950 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00320 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00504 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48507 * 109.47293 * 89.99253 * 8 6 4 10 10 H 1.48504 * 109.47365 * 209.99524 * 8 6 4 11 11 H 1.48507 * 109.46878 * 329.99488 * 8 6 4 12 12 C 1.46894 * 110.99767 * 236.04491 * 2 1 3 13 13 C 1.53009 * 109.46804 * 199.94799 * 12 2 1 14 14 O 1.42895 * 109.46862 * 65.00132 * 13 12 2 15 15 C 1.42901 * 113.99590 * 179.97438 * 14 13 12 16 16 C 1.52582 * 109.22729 * 88.76571 * 15 14 13 17 17 C 1.53098 * 109.95579 * 190.99574 * 16 15 14 18 18 S 1.81743 * 108.84091 * 296.97038 * 17 16 15 19 19 C 1.81744 * 102.22156 * 53.26482 * 18 17 16 20 20 C 1.52586 * 109.22637 * 209.99456 * 15 14 13 21 21 H 1.08992 * 109.47125 * 188.43147 * 1 2 3 22 22 H 1.09004 * 109.46693 * 308.42911 * 1 2 3 23 23 H 1.08998 * 109.46764 * 68.42507 * 1 2 3 24 24 H 1.08999 * 109.46442 * 186.04879 * 3 2 1 25 25 H 1.09003 * 109.47091 * 306.04192 * 3 2 1 26 26 H 0.96996 * 120.00586 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46922 * 79.95195 * 12 2 1 28 28 H 1.08998 * 109.47554 * 319.94649 * 12 2 1 29 29 H 1.08995 * 109.47048 * 304.99819 * 13 12 2 30 30 H 1.08996 * 109.46787 * 185.00284 * 13 12 2 31 31 H 1.08998 * 109.19191 * 329.38340 * 15 14 13 32 32 H 1.09008 * 109.38528 * 311.14244 * 16 15 14 33 33 H 1.08997 * 109.39430 * 70.84100 * 16 15 14 34 34 H 1.09009 * 109.57444 * 177.16121 * 17 16 15 35 35 H 1.08998 * 109.57730 * 56.78053 * 17 16 15 36 36 H 1.08994 * 109.58129 * 186.92296 * 19 18 17 37 37 H 1.09010 * 109.57164 * 66.54209 * 19 18 17 38 38 H 1.08996 * 109.39508 * 289.15617 * 20 15 14 39 39 H 1.09001 * 109.38443 * 48.86016 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0746 1.5114 2.0487 6 6 2.0276 3.3493 1.5288 7 7 1.7151 3.9389 2.6620 8 14 3.0008 4.2759 0.2312 9 1 2.0641 4.9803 -0.6809 10 1 3.8879 5.2670 0.8916 11 1 3.8240 3.3170 -0.5487 12 6 1.9954 -0.7660 -1.1375 13 6 3.4442 -1.1687 -0.8545 14 8 3.4804 -2.0676 0.2557 15 6 4.7944 -2.5078 0.6045 16 6 5.4036 -1.5288 1.6038 17 6 6.8954 -1.8238 1.7811 18 16 7.0849 -3.4892 2.4835 19 6 6.1167 -4.5060 1.3294 20 6 4.7126 -3.9091 1.2029 21 1 -0.3633 -1.0165 0.1507 22 1 -0.3633 0.6388 0.8051 23 1 -0.3633 0.3779 -0.9557 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9274 -0.8310 26 1 1.9897 4.8550 2.8240 27 1 1.9582 -0.1520 -2.0374 28 1 1.3913 -1.6614 -1.2834 29 1 4.0295 -0.2794 -0.6212 30 1 3.8631 -1.6593 -1.7330 31 1 5.4127 -2.5361 -0.2927 32 1 5.2773 -0.5106 1.2357 33 1 4.8979 -1.6302 2.5640 34 1 7.3349 -1.0901 2.4571 35 1 7.3946 -1.7766 0.8134 36 1 6.0474 -5.5250 1.7100 37 1 6.6008 -4.5111 0.3527 38 1 4.2521 -3.8551 2.1893 39 1 4.1065 -4.5437 0.5564 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929808601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:08 Heat of formation + Delta-G solvation = -49.029545 kcal Electronic energy + Delta-G solvation = -18051.887500 eV Core-core repulsion = 15313.580700 eV Total energy + Delta-G solvation = -2738.306800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.74106 -36.74499 -34.64852 -32.45505 -31.63027 -29.56152 -27.88496 -26.18734 -24.27217 -23.19918 -22.19974 -20.75790 -19.84904 -17.05717 -16.89117 -16.70966 -15.44988 -14.96688 -14.65449 -14.47602 -13.95989 -13.81950 -13.69635 -13.43335 -12.93512 -12.88235 -12.68772 -12.34246 -12.16273 -11.74403 -11.61241 -11.45506 -11.15102 -10.88464 -10.73171 -10.68341 -10.38155 -10.11905 -9.84177 -9.80268 -9.27203 -9.19285 -8.57707 -7.79429 -7.32099 -6.04802 -4.01408 1.65597 2.41487 3.25353 3.33316 3.33746 3.74013 4.40518 4.63862 4.73527 4.80333 4.82816 4.96342 5.09630 5.18208 5.26841 5.31733 5.38214 5.50069 5.53976 5.61123 5.73110 5.85128 5.94634 5.96420 6.08991 6.15180 6.21772 6.27710 6.34907 6.70298 6.84959 6.97734 7.49267 7.62200 7.94684 8.07079 8.67892 9.05403 9.56973 11.08495 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.005496 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.336557 B = 5093.323660 C = 5852.873756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.522 5.522 3 C 0.160 3.840 4 C -0.505 4.505 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.873 3.127 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.054 3.946 13 C 0.070 3.930 14 O -0.355 6.355 15 C 0.086 3.914 16 C -0.146 4.146 17 C -0.075 4.075 18 S -0.275 6.275 19 C -0.075 4.075 20 C -0.119 4.119 21 H 0.049 0.951 22 H 0.081 0.919 23 H 0.008 0.992 24 H 0.026 0.974 25 H -0.019 1.019 26 H 0.263 0.737 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.354 -14.572 -6.937 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.246 5.246 3 C 0.034 3.966 4 C -0.543 4.543 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.075 4.075 13 C -0.007 4.007 14 O -0.273 6.273 15 C 0.028 3.972 16 C -0.185 4.185 17 C -0.223 4.223 18 S -0.049 6.049 19 C -0.224 4.224 20 C -0.158 4.158 21 H 0.067 0.933 22 H 0.100 0.900 23 H 0.026 0.974 24 H 0.043 0.957 25 H -0.001 1.001 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.945 -15.004 -5.397 18.283 hybrid contribution -0.085 1.607 -2.605 3.062 sum 8.860 -13.397 -8.002 17.945 Atomic orbital electron populations 1.22249 0.88117 1.00556 1.00194 1.61894 1.07215 1.15985 1.39511 1.20236 0.95074 0.84328 0.96964 1.21038 1.35324 0.97062 1.00918 0.90041 1.24895 0.95830 0.97365 0.95242 1.69890 1.46982 1.13209 1.23850 0.86903 0.80691 0.80080 0.82260 1.20357 1.21136 1.19403 1.22069 0.94542 0.98053 0.92829 1.22598 0.97940 0.92645 0.87508 1.88058 1.25201 1.63611 1.50451 1.21911 0.85806 0.93242 0.96283 1.22245 0.92888 1.01103 1.02288 1.23450 0.99944 0.95078 1.03816 1.86856 1.68917 1.06210 1.42959 1.23399 0.97040 1.01135 1.00803 1.21747 0.95374 0.95124 1.03535 0.93252 0.90000 0.97373 0.95650 1.00139 0.92701 0.94275 0.91127 0.92961 0.94200 0.93141 0.89711 0.89355 0.87410 0.90108 0.87451 0.90006 0.89586 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.36 60.07 0.56 1.29 16 2 N -0.52 -11.11 4.63 -244.37 -1.13 -12.24 16 3 C 0.16 3.89 3.61 -4.98 -0.02 3.87 16 4 C -0.51 -14.39 8.95 -34.44 -0.31 -14.70 16 5 H 0.08 2.55 7.41 -52.48 -0.39 2.16 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 8 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 12 C 0.05 0.92 5.38 -3.82 -0.02 0.90 16 13 C 0.07 1.11 5.90 37.16 0.22 1.33 16 14 O -0.35 -5.86 9.91 -35.23 -0.35 -6.21 16 15 C 0.09 1.14 2.35 -27.16 -0.06 1.08 16 16 C -0.15 -2.04 5.35 -26.89 -0.14 -2.18 16 17 C -0.07 -0.87 6.45 37.21 0.24 -0.63 16 18 S -0.28 -3.26 22.33 -107.50 -2.40 -5.66 16 19 C -0.08 -0.73 6.45 37.21 0.24 -0.49 16 20 C -0.12 -1.34 5.39 -26.89 -0.14 -1.48 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.08 1.78 6.67 -51.93 -0.35 1.44 16 23 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 24 H 0.03 0.62 5.64 -51.93 -0.29 0.33 16 25 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.04 0.63 8.00 -51.93 -0.42 0.22 16 28 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 29 H 0.05 0.90 6.13 -51.93 -0.32 0.58 16 30 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.05 0.60 7.71 -51.93 -0.40 0.20 16 32 H 0.08 1.32 7.56 -51.92 -0.39 0.93 16 33 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 34 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -30.99 317.80 -9.26 -40.26 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.74 Total: -1.71 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 0.47 Total: -9.14 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.36 Total: -39.07 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.35 Total: -6.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.40 Total: -5.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.99 -9.26 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929808601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.773 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds