Wall clock time and date at job start Mon Mar 30 2020 05:09:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46904 * 110.99695 * 2 1
4 4 C 1.50693 * 109.47548 * 66.04376 * 3 2 1
5 5 H 1.08004 * 119.99950 * 0.02562 * 4 3 2
6 6 C 1.37876 * 120.00320 * 179.97438 * 4 3 2
7 7 N 1.31512 * 120.00504 * 180.02562 * 6 4 3
8 8 Si 1.86801 * 119.99875 * 0.02562 * 6 4 3
9 9 H 1.48507 * 109.47293 * 89.99253 * 8 6 4
10 10 H 1.48504 * 109.47365 * 209.99524 * 8 6 4
11 11 H 1.48507 * 109.46878 * 329.99488 * 8 6 4
12 12 C 1.46894 * 110.99767 * 236.04491 * 2 1 3
13 13 C 1.53009 * 109.46804 * 199.94799 * 12 2 1
14 14 O 1.42895 * 109.46862 * 65.00132 * 13 12 2
15 15 C 1.42901 * 113.99590 * 179.97438 * 14 13 12
16 16 C 1.52582 * 109.22729 * 88.76571 * 15 14 13
17 17 C 1.53098 * 109.95579 * 190.99574 * 16 15 14
18 18 S 1.81743 * 108.84091 * 296.97038 * 17 16 15
19 19 C 1.81744 * 102.22156 * 53.26482 * 18 17 16
20 20 C 1.52586 * 109.22637 * 209.99456 * 15 14 13
21 21 H 1.08992 * 109.47125 * 188.43147 * 1 2 3
22 22 H 1.09004 * 109.46693 * 308.42911 * 1 2 3
23 23 H 1.08998 * 109.46764 * 68.42507 * 1 2 3
24 24 H 1.08999 * 109.46442 * 186.04879 * 3 2 1
25 25 H 1.09003 * 109.47091 * 306.04192 * 3 2 1
26 26 H 0.96996 * 120.00586 * 180.02562 * 7 6 4
27 27 H 1.09000 * 109.46922 * 79.95195 * 12 2 1
28 28 H 1.08998 * 109.47554 * 319.94649 * 12 2 1
29 29 H 1.08995 * 109.47048 * 304.99819 * 13 12 2
30 30 H 1.08996 * 109.46787 * 185.00284 * 13 12 2
31 31 H 1.08998 * 109.19191 * 329.38340 * 15 14 13
32 32 H 1.09008 * 109.38528 * 311.14244 * 16 15 14
33 33 H 1.08997 * 109.39430 * 70.84100 * 16 15 14
34 34 H 1.09009 * 109.57444 * 177.16121 * 17 16 15
35 35 H 1.08998 * 109.57730 * 56.78053 * 17 16 15
36 36 H 1.08994 * 109.58129 * 186.92296 * 19 18 17
37 37 H 1.09010 * 109.57164 * 66.54209 * 19 18 17
38 38 H 1.08996 * 109.39508 * 289.15617 * 20 15 14
39 39 H 1.09001 * 109.38443 * 48.86016 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6369 2.0473 1.2983
5 1 1.0746 1.5114 2.0487
6 6 2.0276 3.3493 1.5288
7 7 1.7151 3.9389 2.6620
8 14 3.0008 4.2759 0.2312
9 1 2.0641 4.9803 -0.6809
10 1 3.8879 5.2670 0.8916
11 1 3.8240 3.3170 -0.5487
12 6 1.9954 -0.7660 -1.1375
13 6 3.4442 -1.1687 -0.8545
14 8 3.4804 -2.0676 0.2557
15 6 4.7944 -2.5078 0.6045
16 6 5.4036 -1.5288 1.6038
17 6 6.8954 -1.8238 1.7811
18 16 7.0849 -3.4892 2.4835
19 6 6.1167 -4.5060 1.3294
20 6 4.7126 -3.9091 1.2029
21 1 -0.3633 -1.0165 0.1507
22 1 -0.3633 0.6388 0.8051
23 1 -0.3633 0.3779 -0.9557
24 1 3.0797 1.3444 -0.1083
25 1 1.5611 1.9274 -0.8310
26 1 1.9897 4.8550 2.8240
27 1 1.9582 -0.1520 -2.0374
28 1 1.3913 -1.6614 -1.2834
29 1 4.0295 -0.2794 -0.6212
30 1 3.8631 -1.6593 -1.7330
31 1 5.4127 -2.5361 -0.2927
32 1 5.2773 -0.5106 1.2357
33 1 4.8979 -1.6302 2.5640
34 1 7.3349 -1.0901 2.4571
35 1 7.3946 -1.7766 0.8134
36 1 6.0474 -5.5250 1.7100
37 1 6.6008 -4.5111 0.3527
38 1 4.2521 -3.8551 2.1893
39 1 4.1065 -4.5437 0.5564
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000929808601.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:09:08
Heat of formation + Delta-G solvation = -49.029545 kcal
Electronic energy + Delta-G solvation = -18051.887500 eV
Core-core repulsion = 15313.580700 eV
Total energy + Delta-G solvation = -2738.306800 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-38.74106 -36.74499 -34.64852 -32.45505 -31.63027 -29.56152 -27.88496 -26.18734
-24.27217 -23.19918 -22.19974 -20.75790 -19.84904 -17.05717 -16.89117 -16.70966
-15.44988 -14.96688 -14.65449 -14.47602 -13.95989 -13.81950 -13.69635 -13.43335
-12.93512 -12.88235 -12.68772 -12.34246 -12.16273 -11.74403 -11.61241 -11.45506
-11.15102 -10.88464 -10.73171 -10.68341 -10.38155 -10.11905 -9.84177 -9.80268
-9.27203 -9.19285 -8.57707 -7.79429 -7.32099 -6.04802 -4.01408 1.65597
2.41487 3.25353 3.33316 3.33746 3.74013 4.40518 4.63862 4.73527
4.80333 4.82816 4.96342 5.09630 5.18208 5.26841 5.31733 5.38214
5.50069 5.53976 5.61123 5.73110 5.85128 5.94634 5.96420 6.08991
6.15180 6.21772 6.27710 6.34907 6.70298 6.84959 6.97734 7.49267
7.62200 7.94684 8.07079 8.67892 9.05403 9.56973 11.08495
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.020823 B = 0.005496 C = 0.004783
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1344.336557 B = 5093.323660 C = 5852.873756
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.522 5.522
3 C 0.160 3.840
4 C -0.505 4.505
5 H 0.082 0.918
6 C 0.068 3.932
7 N -0.900 5.900
8 Si 0.873 3.127
9 H -0.278 1.278
10 H -0.285 1.285
11 H -0.269 1.269
12 C 0.054 3.946
13 C 0.070 3.930
14 O -0.355 6.355
15 C 0.086 3.914
16 C -0.146 4.146
17 C -0.075 4.075
18 S -0.275 6.275
19 C -0.075 4.075
20 C -0.119 4.119
21 H 0.049 0.951
22 H 0.081 0.919
23 H 0.008 0.992
24 H 0.026 0.974
25 H -0.019 1.019
26 H 0.263 0.737
27 H 0.039 0.961
28 H 0.070 0.930
29 H 0.052 0.948
30 H 0.040 0.960
31 H 0.051 0.949
32 H 0.084 0.916
33 H 0.088 0.912
34 H 0.108 0.892
35 H 0.080 0.920
36 H 0.107 0.893
37 H 0.081 0.919
38 H 0.085 0.915
39 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.354 -14.572 -6.937 18.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 N -0.246 5.246
3 C 0.034 3.966
4 C -0.543 4.543
5 H 0.100 0.900
6 C -0.133 4.133
7 N -0.539 5.539
8 Si 0.701 3.299
9 H -0.204 1.204
10 H -0.211 1.211
11 H -0.194 1.194
12 C -0.075 4.075
13 C -0.007 4.007
14 O -0.273 6.273
15 C 0.028 3.972
16 C -0.185 4.185
17 C -0.223 4.223
18 S -0.049 6.049
19 C -0.224 4.224
20 C -0.158 4.158
21 H 0.067 0.933
22 H 0.100 0.900
23 H 0.026 0.974
24 H 0.043 0.957
25 H -0.001 1.001
26 H 0.073 0.927
27 H 0.057 0.943
28 H 0.089 0.911
29 H 0.070 0.930
30 H 0.058 0.942
31 H 0.069 0.931
32 H 0.103 0.897
33 H 0.106 0.894
34 H 0.126 0.874
35 H 0.099 0.901
36 H 0.125 0.875
37 H 0.100 0.900
38 H 0.104 0.896
39 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 8.945 -15.004 -5.397 18.283
hybrid contribution -0.085 1.607 -2.605 3.062
sum 8.860 -13.397 -8.002 17.945
Atomic orbital electron populations
1.22249 0.88117 1.00556 1.00194 1.61894 1.07215 1.15985 1.39511
1.20236 0.95074 0.84328 0.96964 1.21038 1.35324 0.97062 1.00918
0.90041 1.24895 0.95830 0.97365 0.95242 1.69890 1.46982 1.13209
1.23850 0.86903 0.80691 0.80080 0.82260 1.20357 1.21136 1.19403
1.22069 0.94542 0.98053 0.92829 1.22598 0.97940 0.92645 0.87508
1.88058 1.25201 1.63611 1.50451 1.21911 0.85806 0.93242 0.96283
1.22245 0.92888 1.01103 1.02288 1.23450 0.99944 0.95078 1.03816
1.86856 1.68917 1.06210 1.42959 1.23399 0.97040 1.01135 1.00803
1.21747 0.95374 0.95124 1.03535 0.93252 0.90000 0.97373 0.95650
1.00139 0.92701 0.94275 0.91127 0.92961 0.94200 0.93141 0.89711
0.89355 0.87410 0.90108 0.87451 0.90006 0.89586 0.90097
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.73 9.36 60.07 0.56 1.29 16
2 N -0.52 -11.11 4.63 -244.37 -1.13 -12.24 16
3 C 0.16 3.89 3.61 -4.98 -0.02 3.87 16
4 C -0.51 -14.39 8.95 -34.44 -0.31 -14.70 16
5 H 0.08 2.55 7.41 -52.48 -0.39 2.16 16
6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16
7 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16
8 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16
9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
11 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16
12 C 0.05 0.92 5.38 -3.82 -0.02 0.90 16
13 C 0.07 1.11 5.90 37.16 0.22 1.33 16
14 O -0.35 -5.86 9.91 -35.23 -0.35 -6.21 16
15 C 0.09 1.14 2.35 -27.16 -0.06 1.08 16
16 C -0.15 -2.04 5.35 -26.89 -0.14 -2.18 16
17 C -0.07 -0.87 6.45 37.21 0.24 -0.63 16
18 S -0.28 -3.26 22.33 -107.50 -2.40 -5.66 16
19 C -0.08 -0.73 6.45 37.21 0.24 -0.49 16
20 C -0.12 -1.34 5.39 -26.89 -0.14 -1.48 16
21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
22 H 0.08 1.78 6.67 -51.93 -0.35 1.44 16
23 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16
24 H 0.03 0.62 5.64 -51.93 -0.29 0.33 16
25 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16
26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
27 H 0.04 0.63 8.00 -51.93 -0.42 0.22 16
28 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16
29 H 0.05 0.90 6.13 -51.93 -0.32 0.58 16
30 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16
31 H 0.05 0.60 7.71 -51.93 -0.40 0.20 16
32 H 0.08 1.32 7.56 -51.92 -0.39 0.93 16
33 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16
34 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16
35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16
37 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16
38 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16
39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 317.80 15.07 4.79 4.79
Total: -1.00 -30.99 317.80 -9.26 -40.26
By element:
Atomic # 1 Polarization: 5.03 SS G_CDS: -6.74 Total: -1.71 kcal
Atomic # 6 Polarization: -9.61 SS G_CDS: 0.47 Total: -9.14 kcal
Atomic # 7 Polarization: -38.71 SS G_CDS: -0.36 Total: -39.07 kcal
Atomic # 8 Polarization: -5.86 SS G_CDS: -0.35 Total: -6.21 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal
Atomic # 16 Polarization: -3.26 SS G_CDS: -2.40 Total: -5.66 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -30.99 -9.26 -40.26 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000929808601.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.773 kcal
(2) G-P(sol) polarization free energy of solvation -30.994 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.030 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds