Wall clock time and date at job start Mon Mar 30 2020 05:09:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46904 * 110.99695 * 2 1
4 4 C 1.50693 * 109.47548 * 66.04376 * 3 2 1
5 5 H 1.08004 * 119.99950 * 0.02562 * 4 3 2
6 6 C 1.37876 * 120.00320 * 179.97438 * 4 3 2
7 7 N 1.31512 * 120.00504 * 180.02562 * 6 4 3
8 8 Si 1.86801 * 119.99875 * 0.02562 * 6 4 3
9 9 H 1.48507 * 109.47293 * 89.99253 * 8 6 4
10 10 H 1.48504 * 109.47365 * 209.99524 * 8 6 4
11 11 H 1.48507 * 109.46878 * 329.99488 * 8 6 4
12 12 C 1.46894 * 110.99767 * 236.04491 * 2 1 3
13 13 C 1.53009 * 109.46804 * 199.94799 * 12 2 1
14 14 O 1.42895 * 109.46862 * 65.00132 * 13 12 2
15 15 C 1.42901 * 113.99590 * 179.97438 * 14 13 12
16 16 C 1.52582 * 109.22729 * 88.76571 * 15 14 13
17 17 C 1.53098 * 109.95579 * 190.99574 * 16 15 14
18 18 S 1.81743 * 108.84091 * 296.97038 * 17 16 15
19 19 C 1.81744 * 102.22156 * 53.26482 * 18 17 16
20 20 C 1.52586 * 109.22637 * 209.99456 * 15 14 13
21 21 H 1.08992 * 109.47125 * 188.43147 * 1 2 3
22 22 H 1.09004 * 109.46693 * 308.42911 * 1 2 3
23 23 H 1.08998 * 109.46764 * 68.42507 * 1 2 3
24 24 H 1.08999 * 109.46442 * 186.04879 * 3 2 1
25 25 H 1.09003 * 109.47091 * 306.04192 * 3 2 1
26 26 H 0.96996 * 120.00586 * 180.02562 * 7 6 4
27 27 H 1.09000 * 109.46922 * 79.95195 * 12 2 1
28 28 H 1.08998 * 109.47554 * 319.94649 * 12 2 1
29 29 H 1.08995 * 109.47048 * 304.99819 * 13 12 2
30 30 H 1.08996 * 109.46787 * 185.00284 * 13 12 2
31 31 H 1.08998 * 109.19191 * 329.38340 * 15 14 13
32 32 H 1.09008 * 109.38528 * 311.14244 * 16 15 14
33 33 H 1.08997 * 109.39430 * 70.84100 * 16 15 14
34 34 H 1.09009 * 109.57444 * 177.16121 * 17 16 15
35 35 H 1.08998 * 109.57730 * 56.78053 * 17 16 15
36 36 H 1.08994 * 109.58129 * 186.92296 * 19 18 17
37 37 H 1.09010 * 109.57164 * 66.54209 * 19 18 17
38 38 H 1.08996 * 109.39508 * 289.15617 * 20 15 14
39 39 H 1.09001 * 109.38443 * 48.86016 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6369 2.0473 1.2983
5 1 1.0746 1.5114 2.0487
6 6 2.0276 3.3493 1.5288
7 7 1.7151 3.9389 2.6620
8 14 3.0008 4.2759 0.2312
9 1 2.0641 4.9803 -0.6809
10 1 3.8879 5.2670 0.8916
11 1 3.8240 3.3170 -0.5487
12 6 1.9954 -0.7660 -1.1375
13 6 3.4442 -1.1687 -0.8545
14 8 3.4804 -2.0676 0.2557
15 6 4.7944 -2.5078 0.6045
16 6 5.4036 -1.5288 1.6038
17 6 6.8954 -1.8238 1.7811
18 16 7.0849 -3.4892 2.4835
19 6 6.1167 -4.5060 1.3294
20 6 4.7126 -3.9091 1.2029
21 1 -0.3633 -1.0165 0.1507
22 1 -0.3633 0.6388 0.8051
23 1 -0.3633 0.3779 -0.9557
24 1 3.0797 1.3444 -0.1083
25 1 1.5611 1.9274 -0.8310
26 1 1.9897 4.8550 2.8240
27 1 1.9582 -0.1520 -2.0374
28 1 1.3913 -1.6614 -1.2834
29 1 4.0295 -0.2794 -0.6212
30 1 3.8631 -1.6593 -1.7330
31 1 5.4127 -2.5361 -0.2927
32 1 5.2773 -0.5106 1.2357
33 1 4.8979 -1.6302 2.5640
34 1 7.3349 -1.0901 2.4571
35 1 7.3946 -1.7766 0.8134
36 1 6.0474 -5.5250 1.7100
37 1 6.6008 -4.5111 0.3527
38 1 4.2521 -3.8551 2.1893
39 1 4.1065 -4.5437 0.5564
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000929808601.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:09:07
Heat of formation + Delta-G solvation = -69.739636 kcal
Electronic energy + Delta-G solvation = -18052.785557 eV
Core-core repulsion = 15313.580700 eV
Total energy + Delta-G solvation = -2739.204857 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.89772 -38.27003 -35.81322 -34.59564 -32.56169 -31.02599 -29.75368 -27.20854
-25.93815 -24.27024 -23.72396 -21.77888 -21.49235 -19.02594 -17.99410 -17.88407
-16.79553 -16.58736 -16.07432 -15.77736 -15.25808 -15.20305 -14.81079 -14.73657
-14.42332 -14.11201 -13.90655 -13.74478 -13.34922 -13.29410 -13.07967 -12.82268
-12.59010 -12.46264 -12.11328 -12.04593 -11.80807 -11.65016 -11.47203 -11.36271
-10.79539 -10.72142 -10.36528 -8.95148 -8.71937 -8.28137 -6.31044 0.78473
1.31917 1.33771 1.44343 1.54880 2.33080 2.67422 3.04415 3.28615
3.67035 3.80372 3.94390 3.96455 4.17348 4.19859 4.23030 4.33323
4.40336 4.45418 4.53488 4.58687 4.67625 4.73930 4.77381 4.85393
4.90988 4.93262 4.95551 5.04344 5.18066 5.20149 5.20763 5.55358
6.00024 6.38237 6.40307 6.71158 6.75561 7.32121 8.88881
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.020823 B = 0.005496 C = 0.004783
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1344.336557 B = 5093.323660 C = 5852.873756
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.545 5.545
3 C 0.173 3.827
4 C -0.513 4.513
5 H 0.034 0.966
6 C 0.007 3.993
7 N -0.949 5.949
8 Si 0.946 3.054
9 H -0.267 1.267
10 H -0.282 1.282
11 H -0.248 1.248
12 C 0.052 3.948
13 C 0.070 3.930
14 O -0.381 6.381
15 C 0.084 3.916
16 C -0.143 4.143
17 C -0.065 4.065
18 S -0.308 6.308
19 C -0.062 4.062
20 C -0.114 4.114
21 H 0.073 0.927
22 H 0.045 0.955
23 H 0.024 0.976
24 H 0.028 0.972
25 H -0.015 1.015
26 H 0.266 0.734
27 H 0.055 0.945
28 H 0.090 0.910
29 H 0.033 0.967
30 H 0.079 0.921
31 H 0.074 0.926
32 H 0.062 0.938
33 H 0.059 0.941
34 H 0.107 0.893
35 H 0.100 0.900
36 H 0.126 0.874
37 H 0.102 0.898
38 H 0.065 0.935
39 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.767 -15.905 -9.871 21.114
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 N -0.269 5.269
3 C 0.046 3.954
4 C -0.552 4.552
5 H 0.052 0.948
6 C -0.190 4.190
7 N -0.590 5.590
8 Si 0.769 3.231
9 H -0.192 1.192
10 H -0.207 1.207
11 H -0.171 1.171
12 C -0.076 4.076
13 C -0.007 4.007
14 O -0.300 6.300
15 C 0.026 3.974
16 C -0.183 4.183
17 C -0.213 4.213
18 S -0.082 6.082
19 C -0.209 4.209
20 C -0.153 4.153
21 H 0.092 0.908
22 H 0.064 0.936
23 H 0.043 0.957
24 H 0.046 0.954
25 H 0.003 0.997
26 H 0.075 0.925
27 H 0.073 0.927
28 H 0.108 0.892
29 H 0.051 0.949
30 H 0.097 0.903
31 H 0.092 0.908
32 H 0.081 0.919
33 H 0.078 0.922
34 H 0.125 0.875
35 H 0.119 0.881
36 H 0.144 0.856
37 H 0.121 0.879
38 H 0.084 0.916
39 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 10.355 -16.368 -8.343 21.088
hybrid contribution -0.608 1.929 -1.609 2.584
sum 9.747 -14.439 -9.952 20.063
Atomic orbital electron populations
1.22183 0.87484 1.01364 0.99647 1.61788 1.08076 1.14490 1.42575
1.19954 0.95168 0.85913 0.94347 1.21269 1.34618 0.97394 1.01901
0.94796 1.25857 0.97038 0.98421 0.97710 1.70057 1.48730 1.13837
1.26413 0.85740 0.79319 0.78761 0.79275 1.19163 1.20712 1.17133
1.22222 0.95539 0.98223 0.91639 1.22629 0.96924 0.92377 0.88755
1.88024 1.27201 1.63668 1.51085 1.22091 0.84830 0.93669 0.96851
1.22176 0.94618 1.00388 1.01109 1.23369 0.98124 0.94996 1.04834
1.87003 1.69526 1.06903 1.44807 1.23457 0.95322 1.01070 1.01097
1.21700 0.96666 0.94344 1.02559 0.90793 0.93604 0.95702 0.95391
0.99729 0.92495 0.92732 0.89200 0.94913 0.90331 0.90839 0.91914
0.92173 0.87499 0.88113 0.85583 0.87903 0.91601 0.88558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.60 9.36 127.69 1.20 2.80 16
2 N -0.55 -22.83 4.63 -927.04 -4.29 -27.12 16
3 C 0.17 8.34 3.61 85.55 0.31 8.65 16
4 C -0.51 -30.24 8.95 25.60 0.23 -30.02 16
5 H 0.03 2.25 7.41 -2.91 -0.02 2.23 16
6 C 0.01 0.39 5.47 84.65 0.46 0.86 16
7 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16
8 Si 0.95 44.03 27.47 68.60 1.88 45.92 16
9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
11 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16
12 C 0.05 1.62 5.38 86.31 0.46 2.09 16
13 C 0.07 2.03 5.90 71.99 0.42 2.45 16
14 O -0.38 -11.99 9.91 -148.98 -1.48 -13.47 16
15 C 0.08 2.06 2.35 30.32 0.07 2.13 16
16 C -0.14 -4.01 5.35 30.49 0.16 -3.85 16
17 C -0.07 -1.45 6.45 72.01 0.46 -0.98 16
18 S -0.31 -6.88 22.33 -56.49 -1.26 -8.14 16
19 C -0.06 -1.01 6.45 72.01 0.46 -0.54 16
20 C -0.11 -2.33 5.39 30.49 0.16 -2.17 16
21 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16
22 H 0.05 2.07 6.67 -2.38 -0.02 2.05 16
23 H 0.02 0.86 8.13 -2.39 -0.02 0.84 16
24 H 0.03 1.34 5.64 -2.39 -0.01 1.32 16
25 H -0.01 -0.70 7.55 -2.39 -0.02 -0.72 16
26 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16
27 H 0.05 1.57 8.00 -2.39 -0.02 1.55 16
28 H 0.09 2.48 7.93 -2.39 -0.02 2.46 16
29 H 0.03 1.07 6.13 -2.39 -0.01 1.05 16
30 H 0.08 1.67 8.08 -2.39 -0.02 1.66 16
31 H 0.07 1.49 7.71 -2.39 -0.02 1.47 16
32 H 0.06 2.00 7.56 -2.38 -0.02 1.98 16
33 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16
34 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16
35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16
36 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16
37 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16
38 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16
39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16
Total: -1.00 -69.51 317.80 0.51 -69.00
By element:
Atomic # 1 Polarization: 11.35 SS G_CDS: 0.94 Total: 12.30 kcal
Atomic # 6 Polarization: -22.99 SS G_CDS: 4.41 Total: -18.58 kcal
Atomic # 7 Polarization: -83.03 SS G_CDS: -3.99 Total: -87.02 kcal
Atomic # 8 Polarization: -11.99 SS G_CDS: -1.48 Total: -13.47 kcal
Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal
Atomic # 16 Polarization: -6.88 SS G_CDS: -1.26 Total: -8.14 kcal
Total: -69.51 0.51 -69.00 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000929808601.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.743 kcal
(2) G-P(sol) polarization free energy of solvation -69.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.740 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds