Wall clock time and date at job start Mon Mar 30 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99695 * 2 1 4 4 C 1.50693 * 109.47548 * 66.04376 * 3 2 1 5 5 H 1.08004 * 119.99950 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00320 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00504 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48507 * 109.47293 * 89.99253 * 8 6 4 10 10 H 1.48504 * 109.47365 * 209.99524 * 8 6 4 11 11 H 1.48507 * 109.46878 * 329.99488 * 8 6 4 12 12 C 1.46894 * 110.99767 * 236.04491 * 2 1 3 13 13 C 1.53009 * 109.46804 * 199.94799 * 12 2 1 14 14 O 1.42895 * 109.46862 * 65.00132 * 13 12 2 15 15 C 1.42901 * 113.99590 * 179.97438 * 14 13 12 16 16 C 1.52582 * 109.22729 * 88.76571 * 15 14 13 17 17 C 1.53098 * 109.95579 * 190.99574 * 16 15 14 18 18 S 1.81743 * 108.84091 * 296.97038 * 17 16 15 19 19 C 1.81744 * 102.22156 * 53.26482 * 18 17 16 20 20 C 1.52586 * 109.22637 * 209.99456 * 15 14 13 21 21 H 1.08992 * 109.47125 * 188.43147 * 1 2 3 22 22 H 1.09004 * 109.46693 * 308.42911 * 1 2 3 23 23 H 1.08998 * 109.46764 * 68.42507 * 1 2 3 24 24 H 1.08999 * 109.46442 * 186.04879 * 3 2 1 25 25 H 1.09003 * 109.47091 * 306.04192 * 3 2 1 26 26 H 0.96996 * 120.00586 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46922 * 79.95195 * 12 2 1 28 28 H 1.08998 * 109.47554 * 319.94649 * 12 2 1 29 29 H 1.08995 * 109.47048 * 304.99819 * 13 12 2 30 30 H 1.08996 * 109.46787 * 185.00284 * 13 12 2 31 31 H 1.08998 * 109.19191 * 329.38340 * 15 14 13 32 32 H 1.09008 * 109.38528 * 311.14244 * 16 15 14 33 33 H 1.08997 * 109.39430 * 70.84100 * 16 15 14 34 34 H 1.09009 * 109.57444 * 177.16121 * 17 16 15 35 35 H 1.08998 * 109.57730 * 56.78053 * 17 16 15 36 36 H 1.08994 * 109.58129 * 186.92296 * 19 18 17 37 37 H 1.09010 * 109.57164 * 66.54209 * 19 18 17 38 38 H 1.08996 * 109.39508 * 289.15617 * 20 15 14 39 39 H 1.09001 * 109.38443 * 48.86016 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0746 1.5114 2.0487 6 6 2.0276 3.3493 1.5288 7 7 1.7151 3.9389 2.6620 8 14 3.0008 4.2759 0.2312 9 1 2.0641 4.9803 -0.6809 10 1 3.8879 5.2670 0.8916 11 1 3.8240 3.3170 -0.5487 12 6 1.9954 -0.7660 -1.1375 13 6 3.4442 -1.1687 -0.8545 14 8 3.4804 -2.0676 0.2557 15 6 4.7944 -2.5078 0.6045 16 6 5.4036 -1.5288 1.6038 17 6 6.8954 -1.8238 1.7811 18 16 7.0849 -3.4892 2.4835 19 6 6.1167 -4.5060 1.3294 20 6 4.7126 -3.9091 1.2029 21 1 -0.3633 -1.0165 0.1507 22 1 -0.3633 0.6388 0.8051 23 1 -0.3633 0.3779 -0.9557 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9274 -0.8310 26 1 1.9897 4.8550 2.8240 27 1 1.9582 -0.1520 -2.0374 28 1 1.3913 -1.6614 -1.2834 29 1 4.0295 -0.2794 -0.6212 30 1 3.8631 -1.6593 -1.7330 31 1 5.4127 -2.5361 -0.2927 32 1 5.2773 -0.5106 1.2357 33 1 4.8979 -1.6302 2.5640 34 1 7.3349 -1.0901 2.4571 35 1 7.3946 -1.7766 0.8134 36 1 6.0474 -5.5250 1.7100 37 1 6.6008 -4.5111 0.3527 38 1 4.2521 -3.8551 2.1893 39 1 4.1065 -4.5437 0.5564 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929808601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:07 Heat of formation + Delta-G solvation = -69.739636 kcal Electronic energy + Delta-G solvation = -18052.785557 eV Core-core repulsion = 15313.580700 eV Total energy + Delta-G solvation = -2739.204857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89772 -38.27003 -35.81322 -34.59564 -32.56169 -31.02599 -29.75368 -27.20854 -25.93815 -24.27024 -23.72396 -21.77888 -21.49235 -19.02594 -17.99410 -17.88407 -16.79553 -16.58736 -16.07432 -15.77736 -15.25808 -15.20305 -14.81079 -14.73657 -14.42332 -14.11201 -13.90655 -13.74478 -13.34922 -13.29410 -13.07967 -12.82268 -12.59010 -12.46264 -12.11328 -12.04593 -11.80807 -11.65016 -11.47203 -11.36271 -10.79539 -10.72142 -10.36528 -8.95148 -8.71937 -8.28137 -6.31044 0.78473 1.31917 1.33771 1.44343 1.54880 2.33080 2.67422 3.04415 3.28615 3.67035 3.80372 3.94390 3.96455 4.17348 4.19859 4.23030 4.33323 4.40336 4.45418 4.53488 4.58687 4.67625 4.73930 4.77381 4.85393 4.90988 4.93262 4.95551 5.04344 5.18066 5.20149 5.20763 5.55358 6.00024 6.38237 6.40307 6.71158 6.75561 7.32121 8.88881 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.005496 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.336557 B = 5093.323660 C = 5852.873756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.545 5.545 3 C 0.173 3.827 4 C -0.513 4.513 5 H 0.034 0.966 6 C 0.007 3.993 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.248 1.248 12 C 0.052 3.948 13 C 0.070 3.930 14 O -0.381 6.381 15 C 0.084 3.916 16 C -0.143 4.143 17 C -0.065 4.065 18 S -0.308 6.308 19 C -0.062 4.062 20 C -0.114 4.114 21 H 0.073 0.927 22 H 0.045 0.955 23 H 0.024 0.976 24 H 0.028 0.972 25 H -0.015 1.015 26 H 0.266 0.734 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 -15.905 -9.871 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.269 5.269 3 C 0.046 3.954 4 C -0.552 4.552 5 H 0.052 0.948 6 C -0.190 4.190 7 N -0.590 5.590 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.171 1.171 12 C -0.076 4.076 13 C -0.007 4.007 14 O -0.300 6.300 15 C 0.026 3.974 16 C -0.183 4.183 17 C -0.213 4.213 18 S -0.082 6.082 19 C -0.209 4.209 20 C -0.153 4.153 21 H 0.092 0.908 22 H 0.064 0.936 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.003 0.997 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.355 -16.368 -8.343 21.088 hybrid contribution -0.608 1.929 -1.609 2.584 sum 9.747 -14.439 -9.952 20.063 Atomic orbital electron populations 1.22183 0.87484 1.01364 0.99647 1.61788 1.08076 1.14490 1.42575 1.19954 0.95168 0.85913 0.94347 1.21269 1.34618 0.97394 1.01901 0.94796 1.25857 0.97038 0.98421 0.97710 1.70057 1.48730 1.13837 1.26413 0.85740 0.79319 0.78761 0.79275 1.19163 1.20712 1.17133 1.22222 0.95539 0.98223 0.91639 1.22629 0.96924 0.92377 0.88755 1.88024 1.27201 1.63668 1.51085 1.22091 0.84830 0.93669 0.96851 1.22176 0.94618 1.00388 1.01109 1.23369 0.98124 0.94996 1.04834 1.87003 1.69526 1.06903 1.44807 1.23457 0.95322 1.01070 1.01097 1.21700 0.96666 0.94344 1.02559 0.90793 0.93604 0.95702 0.95391 0.99729 0.92495 0.92732 0.89200 0.94913 0.90331 0.90839 0.91914 0.92173 0.87499 0.88113 0.85583 0.87903 0.91601 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.36 127.69 1.20 2.80 16 2 N -0.55 -22.83 4.63 -927.04 -4.29 -27.12 16 3 C 0.17 8.34 3.61 85.55 0.31 8.65 16 4 C -0.51 -30.24 8.95 25.60 0.23 -30.02 16 5 H 0.03 2.25 7.41 -2.91 -0.02 2.23 16 6 C 0.01 0.39 5.47 84.65 0.46 0.86 16 7 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 8 Si 0.95 44.03 27.47 68.60 1.88 45.92 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 12 C 0.05 1.62 5.38 86.31 0.46 2.09 16 13 C 0.07 2.03 5.90 71.99 0.42 2.45 16 14 O -0.38 -11.99 9.91 -148.98 -1.48 -13.47 16 15 C 0.08 2.06 2.35 30.32 0.07 2.13 16 16 C -0.14 -4.01 5.35 30.49 0.16 -3.85 16 17 C -0.07 -1.45 6.45 72.01 0.46 -0.98 16 18 S -0.31 -6.88 22.33 -56.49 -1.26 -8.14 16 19 C -0.06 -1.01 6.45 72.01 0.46 -0.54 16 20 C -0.11 -2.33 5.39 30.49 0.16 -2.17 16 21 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 22 H 0.05 2.07 6.67 -2.38 -0.02 2.05 16 23 H 0.02 0.86 8.13 -2.39 -0.02 0.84 16 24 H 0.03 1.34 5.64 -2.39 -0.01 1.32 16 25 H -0.01 -0.70 7.55 -2.39 -0.02 -0.72 16 26 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.05 1.57 8.00 -2.39 -0.02 1.55 16 28 H 0.09 2.48 7.93 -2.39 -0.02 2.46 16 29 H 0.03 1.07 6.13 -2.39 -0.01 1.05 16 30 H 0.08 1.67 8.08 -2.39 -0.02 1.66 16 31 H 0.07 1.49 7.71 -2.39 -0.02 1.47 16 32 H 0.06 2.00 7.56 -2.38 -0.02 1.98 16 33 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 34 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.51 317.80 0.51 -69.00 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.94 Total: 12.30 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.41 Total: -18.58 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -3.99 Total: -87.02 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.48 Total: -13.47 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.26 Total: -8.14 kcal Total: -69.51 0.51 -69.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929808601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.743 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds