Wall clock time and date at job start Mon Mar 30 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81400 * 109.47011 * 2 1 4 4 C 1.81399 * 103.00457 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.05444 * 53.57637 * 4 3 2 6 6 C 1.54378 * 110.04420 * 292.11367 * 4 3 2 7 7 C 1.54895 * 104.19604 * 217.08878 * 6 4 3 8 8 C 1.54896 * 102.74736 * 37.96667 * 7 6 4 9 9 C 1.53867 * 110.03691 * 175.00198 * 4 3 2 10 10 H 1.09006 * 110.03086 * 238.61906 * 9 4 3 11 11 N 1.46895 * 110.03088 * 359.97438 * 9 4 3 12 12 C 1.46906 * 111.00089 * 204.30892 * 11 9 4 13 13 C 1.53002 * 109.46937 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47070 * 60.00391 * 13 12 11 15 15 O 1.42898 * 109.47113 * 300.00260 * 13 12 11 16 16 C 1.50703 * 109.46966 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99742 * 0.02562 * 16 13 12 18 18 C 1.37873 * 119.99873 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00433 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99975 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47061 * 59.99778 * 20 18 16 22 22 H 1.48494 * 109.47452 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46988 * 300.00348 * 20 18 16 24 24 H 1.08998 * 109.46369 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47092 * 300.00085 * 1 2 3 26 26 H 1.09000 * 109.46809 * 60.00025 * 1 2 3 27 27 H 1.08997 * 109.47505 * 240.00252 * 2 1 3 28 28 H 1.08999 * 109.47216 * 119.99625 * 2 1 3 29 29 H 1.08996 * 110.46320 * 98.41637 * 6 4 3 30 30 H 1.09007 * 110.61863 * 335.82853 * 6 4 3 31 31 H 1.09001 * 110.75325 * 279.65047 * 7 6 4 32 32 H 1.09000 * 110.75281 * 156.28082 * 7 6 4 33 33 H 1.08997 * 110.47848 * 203.38434 * 8 7 6 34 34 H 1.08998 * 110.59948 * 80.79213 * 8 7 6 35 35 H 1.00900 * 110.99739 * 80.36384 * 11 9 4 36 36 H 1.09002 * 109.46463 * 60.00817 * 12 11 9 37 37 H 1.08996 * 109.47065 * 300.00445 * 12 11 9 38 38 H 0.96698 * 113.99898 * 299.99778 * 15 13 12 39 39 H 0.97001 * 120.00323 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5060 -0.0008 5 1 4.2397 0.8599 -0.8249 6 6 4.4020 0.9037 1.3425 7 6 5.7464 1.6160 1.6332 8 6 5.4808 3.0609 1.1422 9 6 4.6231 2.8775 -0.1268 10 1 5.2579 2.8975 -1.0127 11 7 3.6121 3.9401 -0.2092 12 6 4.1509 5.1282 -0.8846 13 6 3.0716 6.2107 -0.9506 14 1 2.7614 6.4765 0.0600 15 8 1.9462 5.7173 -1.6800 16 6 3.6241 7.4293 -1.6439 17 1 4.6430 7.4313 -2.0021 18 6 2.8288 8.5416 -1.8210 19 7 1.5880 8.5390 -1.3854 20 14 3.5139 10.0524 -2.6799 21 1 3.9361 9.6903 -4.0568 22 1 2.4668 11.1034 -2.7429 23 1 4.6838 10.5647 -1.9221 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.5528 -0.1714 1.2462 30 1 3.6790 1.1176 2.1298 31 1 6.5567 1.1580 1.0659 32 1 5.9663 1.6051 2.7007 33 1 6.4190 3.5598 0.8997 34 1 4.9321 3.6270 1.8950 35 1 3.2580 4.1740 0.7062 36 1 4.4614 4.8622 -1.8950 37 1 5.0090 5.5047 -0.3279 38 1 2.1490 5.4609 -2.5900 39 1 1.0286 9.3216 -1.5096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930444387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:03 Heat of formation + Delta-G solvation = -65.973080 kcal Electronic energy + Delta-G solvation = -17801.496486 eV Core-core repulsion = 15062.454959 eV Total energy + Delta-G solvation = -2739.041527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.54418 -35.86063 -33.29955 -32.53618 -31.98672 -28.87106 -28.54362 -26.27341 -23.78232 -23.26057 -20.85177 -20.62731 -19.83103 -16.94549 -16.13980 -15.99295 -15.21615 -14.64878 -14.55028 -14.41843 -13.93496 -13.86997 -13.62172 -13.07864 -12.75111 -12.43464 -12.25937 -11.97967 -11.49466 -11.38035 -11.15837 -11.09558 -10.98176 -10.85947 -10.75211 -10.70760 -10.64881 -10.49580 -9.99018 -9.25732 -8.92030 -8.51841 -7.98430 -7.64327 -7.09175 -5.94190 -4.12749 2.00603 3.01240 3.31973 3.37408 3.38835 4.40652 4.50043 4.58411 4.77300 5.01448 5.05293 5.12646 5.33273 5.35638 5.43387 5.46677 5.49104 5.59233 5.63500 5.76705 5.78579 5.88746 5.91479 6.02853 6.15667 6.16984 6.26502 6.27438 6.31709 6.61153 6.91516 7.64713 7.76678 7.91149 8.01230 8.27606 8.91035 9.54133 9.71896 11.09791 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.005093 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.259246 B = 5496.830485 C = 6408.480101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 S -0.156 6.156 4 C -0.066 4.066 5 H 0.080 0.920 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.152 4.152 9 C 0.102 3.898 10 H 0.081 0.919 11 N -0.661 5.661 12 C 0.037 3.963 13 C 0.237 3.763 14 H 0.050 0.950 15 O -0.551 6.551 16 C -0.574 4.574 17 H 0.053 0.947 18 C 0.080 3.920 19 N -0.858 5.858 20 Si 0.888 3.112 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.342 0.658 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.342 0.658 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -16.745 4.843 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.279 4.279 3 S 0.072 5.928 4 C -0.196 4.196 5 H 0.099 0.901 6 C -0.160 4.160 7 C -0.157 4.157 8 C -0.191 4.191 9 C -0.010 4.010 10 H 0.100 0.900 11 N -0.291 5.291 12 C -0.092 4.092 13 C 0.178 3.822 14 H 0.068 0.932 15 O -0.352 6.352 16 C -0.613 4.613 17 H 0.071 0.929 18 C -0.126 4.126 19 N -0.493 5.493 20 Si 0.715 3.285 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.185 0.815 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.461 -15.812 4.839 16.894 hybrid contribution 2.209 -0.041 -0.343 2.235 sum 5.670 -15.853 4.496 17.426 Atomic orbital electron populations 1.21418 0.92773 1.01568 1.03249 1.23510 1.00236 1.00690 1.03478 1.88011 1.02136 1.05110 1.97555 1.24004 0.95932 1.00071 0.99606 0.90135 1.22842 0.97717 0.99025 0.96453 1.22404 0.96899 0.95685 1.00755 1.23151 1.00673 0.96933 0.98385 1.21985 0.91606 0.90224 0.97180 0.90031 1.60338 1.33422 1.09646 1.25744 1.22920 0.98330 0.90677 0.97262 1.19256 0.82271 0.87336 0.93317 0.93247 1.86569 1.36927 1.85611 1.26113 1.21615 0.98807 0.99727 1.41121 0.92907 1.25013 0.94619 0.98180 0.94769 1.70074 1.06341 1.29015 1.43912 0.86761 0.78670 0.82763 0.80277 1.20183 1.21206 1.20290 0.92166 0.91931 0.91635 0.91234 0.91428 0.92023 0.90326 0.91643 0.91576 0.91550 0.91092 0.83911 0.92275 0.96097 0.81462 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.92 37.16 0.37 -1.06 16 2 C -0.13 -1.51 6.55 37.16 0.24 -1.27 16 3 S -0.16 -2.33 19.25 -107.50 -2.07 -4.40 16 4 C -0.07 -0.86 3.42 -25.56 -0.09 -0.94 16 5 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 6 C -0.12 -1.30 6.26 -25.01 -0.16 -1.45 16 7 C -0.12 -1.20 6.91 -24.73 -0.17 -1.37 16 8 C -0.15 -1.89 6.43 -25.07 -0.16 -2.05 16 9 C 0.10 1.47 3.21 -66.60 -0.21 1.25 16 10 H 0.08 1.19 7.82 -51.93 -0.41 0.79 16 11 N -0.66 -11.81 4.29 -105.55 -0.45 -12.27 16 12 C 0.04 0.75 5.11 -3.82 -0.02 0.73 16 13 C 0.24 6.06 3.03 -27.88 -0.08 5.97 16 14 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 15 O -0.55 -14.70 12.60 -35.23 -0.44 -15.15 16 16 C -0.57 -15.93 8.76 -34.44 -0.30 -16.23 16 17 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 18 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 19 N -0.86 -25.79 12.84 55.43 0.71 -25.08 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.89 7.82 -51.93 -0.41 0.49 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.94 7.57 -51.93 -0.39 0.54 16 35 H 0.34 6.31 7.98 -39.29 -0.31 6.00 16 36 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.34 8.37 9.04 45.56 0.41 8.78 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -30.11 326.87 -9.17 -39.28 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.14 Total: 10.56 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.68 Total: -14.23 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.26 Total: -37.35 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.44 Total: -15.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.07 Total: -4.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.11 -9.17 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930444387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.696 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds