Wall clock time and date at job start Mon Mar 30 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81400 * 109.47011 * 2 1 4 4 C 1.81399 * 103.00457 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.05444 * 53.57637 * 4 3 2 6 6 C 1.54378 * 110.04420 * 292.11367 * 4 3 2 7 7 C 1.54895 * 104.19604 * 217.08878 * 6 4 3 8 8 C 1.54896 * 102.74736 * 37.96667 * 7 6 4 9 9 C 1.53867 * 110.03691 * 175.00198 * 4 3 2 10 10 H 1.09006 * 110.03086 * 238.61906 * 9 4 3 11 11 N 1.46895 * 110.03088 * 359.97438 * 9 4 3 12 12 C 1.46906 * 111.00089 * 204.30892 * 11 9 4 13 13 C 1.53002 * 109.46937 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47070 * 60.00391 * 13 12 11 15 15 O 1.42898 * 109.47113 * 300.00260 * 13 12 11 16 16 C 1.50703 * 109.46966 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99742 * 0.02562 * 16 13 12 18 18 C 1.37873 * 119.99873 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00433 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99975 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47061 * 59.99778 * 20 18 16 22 22 H 1.48494 * 109.47452 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46988 * 300.00348 * 20 18 16 24 24 H 1.08998 * 109.46369 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47092 * 300.00085 * 1 2 3 26 26 H 1.09000 * 109.46809 * 60.00025 * 1 2 3 27 27 H 1.08997 * 109.47505 * 240.00252 * 2 1 3 28 28 H 1.08999 * 109.47216 * 119.99625 * 2 1 3 29 29 H 1.08996 * 110.46320 * 98.41637 * 6 4 3 30 30 H 1.09007 * 110.61863 * 335.82853 * 6 4 3 31 31 H 1.09001 * 110.75325 * 279.65047 * 7 6 4 32 32 H 1.09000 * 110.75281 * 156.28082 * 7 6 4 33 33 H 1.08997 * 110.47848 * 203.38434 * 8 7 6 34 34 H 1.08998 * 110.59948 * 80.79213 * 8 7 6 35 35 H 1.00900 * 110.99739 * 80.36384 * 11 9 4 36 36 H 1.09002 * 109.46463 * 60.00817 * 12 11 9 37 37 H 1.08996 * 109.47065 * 300.00445 * 12 11 9 38 38 H 0.96698 * 113.99898 * 299.99778 * 15 13 12 39 39 H 0.97001 * 120.00323 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5060 -0.0008 5 1 4.2397 0.8599 -0.8249 6 6 4.4020 0.9037 1.3425 7 6 5.7464 1.6160 1.6332 8 6 5.4808 3.0609 1.1422 9 6 4.6231 2.8775 -0.1268 10 1 5.2579 2.8975 -1.0127 11 7 3.6121 3.9401 -0.2092 12 6 4.1509 5.1282 -0.8846 13 6 3.0716 6.2107 -0.9506 14 1 2.7614 6.4765 0.0600 15 8 1.9462 5.7173 -1.6800 16 6 3.6241 7.4293 -1.6439 17 1 4.6430 7.4313 -2.0021 18 6 2.8288 8.5416 -1.8210 19 7 1.5880 8.5390 -1.3854 20 14 3.5139 10.0524 -2.6799 21 1 3.9361 9.6903 -4.0568 22 1 2.4668 11.1034 -2.7429 23 1 4.6838 10.5647 -1.9221 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.5528 -0.1714 1.2462 30 1 3.6790 1.1176 2.1298 31 1 6.5567 1.1580 1.0659 32 1 5.9663 1.6051 2.7007 33 1 6.4190 3.5598 0.8997 34 1 4.9321 3.6270 1.8950 35 1 3.2580 4.1740 0.7062 36 1 4.4614 4.8622 -1.8950 37 1 5.0090 5.5047 -0.3279 38 1 2.1490 5.4609 -2.5900 39 1 1.0286 9.3216 -1.5096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930444387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:03 Heat of formation + Delta-G solvation = -85.952830 kcal Electronic energy + Delta-G solvation = -17802.362873 eV Core-core repulsion = 15062.454959 eV Total energy + Delta-G solvation = -2739.907914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69643 -37.73016 -34.77802 -34.15748 -33.47422 -30.29331 -29.79121 -27.84248 -25.47180 -24.26329 -22.48388 -21.74239 -20.99853 -19.00127 -17.36229 -17.18944 -16.64022 -16.37129 -15.98360 -15.77006 -15.54574 -15.04010 -14.82900 -14.69710 -14.06382 -13.78940 -13.43206 -13.18068 -12.95707 -12.89728 -12.78390 -12.43975 -12.38885 -12.25678 -12.05781 -11.93748 -11.91981 -11.62580 -11.50582 -10.99346 -10.68974 -10.31179 -10.02029 -9.06676 -8.27048 -8.10823 -6.37421 0.96288 1.40970 1.42983 1.51161 1.99264 2.39998 3.14859 3.37105 3.55275 3.66961 4.08180 4.13462 4.22695 4.35522 4.36979 4.40569 4.42217 4.51838 4.61755 4.63518 4.69507 4.77151 4.92185 4.94995 4.99602 5.02302 5.11158 5.12888 5.18946 5.29370 5.39668 5.62231 5.79104 6.06543 6.26256 6.51025 6.76683 7.37005 7.66135 8.93452 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.005093 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.259246 B = 5496.830485 C = 6408.480101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 S -0.239 6.239 4 C -0.050 4.050 5 H 0.089 0.911 6 C -0.113 4.113 7 C -0.109 4.109 8 C -0.149 4.149 9 C 0.097 3.903 10 H 0.080 0.920 11 N -0.665 5.665 12 C 0.059 3.941 13 C 0.236 3.764 14 H 0.013 0.987 15 O -0.567 6.567 16 C -0.589 4.589 17 H 0.059 0.941 18 C 0.026 3.974 19 N -0.900 5.900 20 Si 0.960 3.040 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.268 1.268 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.335 0.665 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.350 0.650 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 -18.220 4.730 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.258 4.258 3 S -0.011 6.011 4 C -0.180 4.180 5 H 0.107 0.893 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.189 4.189 9 C -0.014 4.014 10 H 0.099 0.901 11 N -0.295 5.295 12 C -0.070 4.070 13 C 0.178 3.822 14 H 0.031 0.969 15 O -0.370 6.370 16 C -0.627 4.627 17 H 0.077 0.923 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.785 3.215 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.193 1.193 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.154 0.846 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.194 0.806 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.135 -17.309 4.724 18.663 hybrid contribution 1.657 0.338 -0.294 1.716 sum 6.792 -16.971 4.430 18.809 Atomic orbital electron populations 1.21442 0.92390 1.02910 1.02209 1.23461 1.00350 0.97411 1.04624 1.88278 1.05314 1.09755 1.97800 1.23957 0.93463 0.99203 1.01402 0.89281 1.22786 0.97633 1.00216 0.94640 1.22386 0.96950 0.93573 1.01845 1.23081 1.00077 0.98723 0.97025 1.22107 0.91226 0.89835 0.98243 0.90134 1.60301 1.34856 1.09035 1.25325 1.22457 0.96331 0.90433 0.97776 1.19129 0.83086 0.88827 0.91126 0.96917 1.86518 1.37906 1.85753 1.26779 1.22025 0.99102 1.00683 1.40878 0.92307 1.25907 0.94794 1.01536 0.95445 1.70227 1.07903 1.30043 1.45541 0.85608 0.78033 0.78551 0.79322 1.19197 1.21043 1.19293 0.89465 0.92650 0.93064 0.90371 0.89766 0.89805 0.91098 0.90065 0.90150 0.91253 0.92306 0.84625 0.92139 0.95883 0.80590 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.92 71.98 0.71 -1.97 16 2 C -0.11 -2.36 6.55 71.98 0.47 -1.89 16 3 S -0.24 -7.13 19.25 -56.49 -1.09 -8.22 16 4 C -0.05 -1.23 3.42 31.35 0.11 -1.12 16 5 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 6 C -0.11 -2.13 6.26 31.71 0.20 -1.93 16 7 C -0.11 -1.88 6.91 31.89 0.22 -1.66 16 8 C -0.15 -3.50 6.43 31.67 0.20 -3.30 16 9 C 0.10 2.71 3.21 45.64 0.15 2.85 16 10 H 0.08 2.26 7.82 -2.38 -0.02 2.24 16 11 N -0.67 -24.13 4.29 -487.84 -2.09 -26.23 16 12 C 0.06 2.47 5.11 86.30 0.44 2.91 16 13 C 0.24 12.48 3.03 29.85 0.09 12.57 16 14 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 15 O -0.57 -31.24 12.60 -148.98 -1.88 -33.12 16 16 C -0.59 -33.01 8.76 25.60 0.22 -32.79 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 18 C 0.03 1.46 5.40 84.65 0.46 1.92 16 19 N -0.90 -55.33 12.84 21.44 0.28 -55.06 16 20 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.47 7.82 -2.38 -0.02 1.45 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.53 7.57 -2.39 -0.02 1.51 16 35 H 0.34 12.86 7.98 -89.69 -0.72 12.14 16 36 H 0.06 2.49 8.07 -2.39 -0.02 2.47 16 37 H 0.02 0.94 8.12 -2.39 -0.02 0.92 16 38 H 0.35 17.59 9.04 -74.06 -0.67 16.92 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -65.66 326.87 0.15 -65.50 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.37 Total: 35.48 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 3.28 Total: -24.41 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.82 Total: -81.28 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.88 Total: -33.12 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -7.13 SS G_CDS: -1.09 Total: -8.22 kcal Total: -65.66 0.15 -65.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930444387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.449 kcal (2) G-P(sol) polarization free energy of solvation -65.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds