Wall clock time and date at job start Mon Mar 30 2020 04:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48508 * 109.46676 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99510 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00238 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.38897 * 120.03893 * 89.99793 * 11 10 9 13 13 N 1.39740 * 120.05521 * 359.95750 * 12 11 10 14 14 C 1.38880 * 119.88861 * 179.97438 * 12 11 10 15 15 C 1.38144 * 119.96440 * 0.02562 * 14 12 11 16 16 C 1.38333 * 120.07015 * 359.97438 * 15 14 12 17 17 Cl 1.73607 * 119.94138 * 180.02562 * 16 15 14 18 18 C 1.38197 * 120.03335 * 269.72264 * 11 10 9 19 19 Cl 1.73596 * 119.98285 * 0.02562 * 18 11 10 20 20 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 23 23 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 24 24 H 0.96993 * 120.00147 * 359.97438 * 13 12 11 25 25 H 0.96995 * 119.99953 * 179.97438 * 13 12 11 26 26 H 1.08002 * 120.02091 * 180.02562 * 14 12 11 27 27 H 1.07994 * 119.96446 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6273 -5.3304 -1.2028 13 7 1.0798 -4.8000 -2.4138 14 6 -0.2747 -6.3864 -1.1997 15 6 -0.7215 -6.9087 -0.0014 16 6 -0.2709 -6.3815 1.1955 17 17 -0.8340 -7.0409 2.6994 18 6 0.6332 -5.3320 1.1960 19 17 1.2014 -4.6772 2.7000 20 1 -0.4849 0.8400 -0.0004 21 1 0.3555 -2.3881 0.0005 22 1 2.6847 -3.7145 -0.8895 23 1 2.6847 -3.7145 0.8905 24 1 1.7094 -4.0621 -2.4150 25 1 0.7644 -5.1697 -3.2532 26 1 -0.6268 -6.7990 -2.1337 27 1 -1.4232 -7.7296 0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059054286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:48 Heat of formation + Delta-G solvation = 21.007499 kcal Electronic energy + Delta-G solvation = -14901.280822 eV Core-core repulsion = 12131.751319 eV Total energy + Delta-G solvation = -2769.529502 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.55556 -36.46954 -36.12459 -34.72045 -33.87868 -31.87970 -29.82067 -28.30716 -25.59782 -22.95611 -22.22430 -20.80979 -17.46075 -17.13320 -17.00081 -15.75830 -14.71794 -14.53267 -14.28280 -13.93693 -13.54443 -13.02529 -12.81337 -12.39713 -11.94203 -11.69155 -11.47403 -11.30495 -10.94678 -10.82594 -10.55086 -10.35064 -10.05195 -9.91967 -9.77166 -8.88751 -8.50071 -7.33883 -6.92585 -5.75427 -3.04948 1.32190 1.48661 2.24917 2.61139 3.43060 3.48800 3.50617 3.75426 4.06319 4.61089 4.87770 5.11065 5.37913 5.48038 5.57780 5.83743 5.93420 6.15675 6.22480 6.29453 6.50018 6.65391 6.80983 7.56584 7.69365 7.93143 8.41471 9.53764 10.09173 10.45685 11.46778 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.006500 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.075326 B = 4306.693275 C = 4962.911147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.194 3.806 11 C -0.143 4.143 12 C 0.250 3.750 13 N -0.862 5.862 14 C -0.196 4.196 15 C -0.055 4.055 16 C -0.097 4.097 17 Cl -0.072 7.072 18 C 0.034 3.966 19 Cl -0.041 7.041 20 H 0.255 0.745 21 H 0.386 0.614 22 H 0.024 0.976 23 H 0.039 0.961 24 H 0.410 0.590 25 H 0.396 0.604 26 H 0.130 0.870 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -15.215 -1.632 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.066 3.934 11 C -0.149 4.149 12 C 0.142 3.858 13 N -0.400 5.400 14 C -0.219 4.219 15 C -0.075 4.075 16 C -0.126 4.126 17 Cl -0.043 7.043 18 C 0.004 3.996 19 Cl -0.012 7.012 20 H 0.065 0.935 21 H 0.220 0.780 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.242 0.758 25 H 0.224 0.776 26 H 0.148 0.852 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.021 -15.063 -1.339 15.123 hybrid contribution 0.142 1.108 -0.070 1.119 sum 0.163 -13.955 -1.408 14.027 Atomic orbital electron populations 1.69674 1.05094 1.25609 1.57370 1.24723 0.95454 0.97558 1.02889 0.86215 0.78706 0.83970 0.77415 1.21816 1.21807 1.20760 1.19202 0.90972 0.83916 1.43063 0.91160 1.42299 1.05818 0.98971 1.89372 1.19491 0.91474 0.83422 0.98964 1.19512 1.04501 1.01432 0.89441 1.17505 0.91077 0.90867 0.86354 1.42660 1.52302 1.40757 1.04287 1.20507 1.03081 1.00166 0.98161 1.20584 0.98352 0.98871 0.89649 1.20346 1.03956 1.00562 0.87769 1.98333 1.88549 1.85135 1.32295 1.20381 0.96571 0.94337 0.88267 1.98384 1.87556 1.85126 1.30096 0.93522 0.78046 0.95902 0.94345 0.75804 0.77566 0.85180 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.29 15 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 15 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 15 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 15 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 15 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 15 9 N -0.72 -17.83 5.59 -61.08 -0.34 -18.17 15 10 C 0.19 3.90 5.55 -5.20 -0.03 3.87 15 11 C -0.14 -2.53 5.27 -104.39 -0.55 -3.08 15 12 C 0.25 3.77 6.73 -83.77 -0.56 3.21 15 13 N -0.86 -11.19 8.99 32.42 0.29 -10.90 15 14 C -0.20 -2.51 9.89 -39.38 -0.39 -2.90 15 15 C -0.05 -0.72 9.82 -39.58 -0.39 -1.10 15 16 C -0.10 -1.49 6.32 -39.44 -0.25 -1.74 15 17 Cl -0.07 -1.02 27.95 -51.86 -1.45 -2.47 15 18 C 0.03 0.59 6.31 -39.49 -0.25 0.34 15 19 Cl -0.04 -0.74 26.28 -51.86 -1.36 -2.10 15 20 H 0.25 7.46 8.31 -40.82 -0.34 7.12 15 21 H 0.39 10.43 7.66 -40.82 -0.31 10.11 15 22 H 0.02 0.44 6.55 -51.93 -0.34 0.10 15 23 H 0.04 0.80 6.89 -51.93 -0.36 0.45 15 24 H 0.41 5.87 6.83 -40.82 -0.28 5.59 15 25 H 0.40 3.87 8.84 -40.82 -0.36 3.51 15 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 27 H 0.13 1.38 8.06 -52.49 -0.42 0.96 15 LS Contribution 267.17 15.07 4.03 4.03 Total: -1.00 -30.12 267.17 -7.84 -37.96 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -2.04 Total: 10.23 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.67 Total: -8.51 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.67 Total: -56.36 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.81 Total: -4.58 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.12 -7.84 -37.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059054286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.966 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds