Wall clock time and date at job start Mon Mar 30 2020 04:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48508 * 109.46676 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99510 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00238 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.38897 * 120.03893 * 89.99793 * 11 10 9 13 13 N 1.39740 * 120.05521 * 359.95750 * 12 11 10 14 14 C 1.38880 * 119.88861 * 179.97438 * 12 11 10 15 15 C 1.38144 * 119.96440 * 0.02562 * 14 12 11 16 16 C 1.38333 * 120.07015 * 359.97438 * 15 14 12 17 17 Cl 1.73607 * 119.94138 * 180.02562 * 16 15 14 18 18 C 1.38197 * 120.03335 * 269.72264 * 11 10 9 19 19 Cl 1.73596 * 119.98285 * 0.02562 * 18 11 10 20 20 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 23 23 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 24 24 H 0.96993 * 120.00147 * 359.97438 * 13 12 11 25 25 H 0.96995 * 119.99953 * 179.97438 * 13 12 11 26 26 H 1.08002 * 120.02091 * 180.02562 * 14 12 11 27 27 H 1.07994 * 119.96446 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6273 -5.3304 -1.2028 13 7 1.0798 -4.8000 -2.4138 14 6 -0.2747 -6.3864 -1.1997 15 6 -0.7215 -6.9087 -0.0014 16 6 -0.2709 -6.3815 1.1955 17 17 -0.8340 -7.0409 2.6994 18 6 0.6332 -5.3320 1.1960 19 17 1.2014 -4.6772 2.7000 20 1 -0.4849 0.8400 -0.0004 21 1 0.3555 -2.3881 0.0005 22 1 2.6847 -3.7145 -0.8895 23 1 2.6847 -3.7145 0.8905 24 1 1.7094 -4.0621 -2.4150 25 1 0.7644 -5.1697 -3.2532 26 1 -0.6268 -6.7990 -2.1337 27 1 -1.4232 -7.7296 0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059054286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:48 Heat of formation + Delta-G solvation = 1.193040 kcal Electronic energy + Delta-G solvation = -14902.140041 eV Core-core repulsion = 12131.751319 eV Total energy + Delta-G solvation = -2770.388722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74104 -37.65855 -37.41659 -36.44114 -35.07537 -33.62542 -31.42419 -29.49887 -27.25856 -24.76035 -23.42442 -22.15277 -19.30876 -18.32221 -18.27170 -17.03170 -16.58444 -15.71547 -15.49867 -15.42552 -15.19945 -14.66357 -14.20158 -13.83800 -13.19408 -13.03901 -12.95354 -12.72924 -12.68837 -12.53248 -12.13097 -11.85434 -11.71747 -11.63804 -11.01784 -10.92642 -9.75039 -8.96032 -8.46018 -7.90419 -5.19131 0.13901 0.33489 1.02223 1.41107 1.48595 1.50193 1.58363 2.52864 2.66096 2.99649 3.42632 3.71771 4.01492 4.17869 4.28479 4.39617 4.63144 4.64665 4.99533 5.09287 5.18914 5.31077 5.52570 5.60255 6.28824 6.45773 6.95710 7.37014 8.09320 8.35778 9.32502 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.006500 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.075326 B = 4306.693275 C = 4962.911147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.726 5.726 10 C 0.198 3.802 11 C -0.172 4.172 12 C 0.246 3.754 13 N -0.854 5.854 14 C -0.183 4.183 15 C -0.044 4.044 16 C -0.110 4.110 17 Cl -0.066 7.066 18 C 0.017 3.983 19 Cl -0.061 7.061 20 H 0.249 0.751 21 H 0.372 0.628 22 H 0.037 0.963 23 H 0.028 0.972 24 H 0.404 0.596 25 H 0.413 0.587 26 H 0.170 0.830 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -16.582 -2.857 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.368 5.368 10 C 0.072 3.928 11 C -0.178 4.178 12 C 0.136 3.864 13 N -0.392 5.392 14 C -0.206 4.206 15 C -0.063 4.063 16 C -0.140 4.140 17 Cl -0.038 7.038 18 C -0.012 4.012 19 Cl -0.032 7.032 20 H 0.058 0.942 21 H 0.204 0.796 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.234 0.766 25 H 0.244 0.756 26 H 0.187 0.813 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.014 -16.473 -2.590 16.676 hybrid contribution 0.166 1.390 0.273 1.426 sum 0.152 -15.083 -2.318 15.261 Atomic orbital electron populations 1.69831 1.06598 1.25832 1.59558 1.25469 0.96205 1.00745 1.03837 0.85203 0.77637 0.79857 0.77411 1.21227 1.22682 1.19693 1.19595 0.91428 0.85030 1.40955 0.90559 1.42413 1.05210 1.00058 1.89158 1.19470 0.91921 0.82653 0.98761 1.19335 1.05863 1.01794 0.90843 1.17695 0.91310 0.91383 0.85968 1.42637 1.51760 1.40265 1.04569 1.20936 1.01296 0.98598 0.99736 1.21034 0.97742 0.98888 0.88636 1.20548 1.03944 1.00468 0.88996 1.98332 1.88363 1.84880 1.32201 1.20555 0.97725 0.95431 0.87475 1.98367 1.87930 1.85583 1.31334 0.94192 0.79642 0.94538 0.95392 0.76610 0.75591 0.81291 0.81328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.23 13.06 21.65 0.28 -58.95 15 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 15 3 Si 0.97 46.02 29.55 68.60 2.03 48.05 15 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 15 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 15 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 7 C -0.24 -13.06 9.99 84.04 0.84 -12.22 15 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 15 9 N -0.73 -36.25 5.59 -347.17 -1.94 -38.19 15 10 C 0.20 7.97 5.55 85.63 0.48 8.45 15 11 C -0.17 -5.98 5.27 -19.72 -0.10 -6.08 15 12 C 0.25 6.88 6.73 38.19 0.26 7.14 15 13 N -0.85 -20.34 8.99 -51.36 -0.46 -20.80 15 14 C -0.18 -3.99 9.89 22.40 0.22 -3.77 15 15 C -0.04 -0.99 9.82 22.27 0.22 -0.77 15 16 C -0.11 -3.20 6.32 22.36 0.14 -3.06 15 17 Cl -0.07 -1.81 27.95 -2.72 -0.08 -1.88 15 18 C 0.02 0.59 6.31 22.33 0.14 0.73 15 19 Cl -0.06 -2.25 26.28 -2.72 -0.07 -2.32 15 20 H 0.25 14.87 8.31 -92.71 -0.77 14.10 15 21 H 0.37 20.46 7.66 -92.71 -0.71 19.75 15 22 H 0.04 1.37 6.55 -2.38 -0.02 1.36 15 23 H 0.03 1.19 6.89 -2.38 -0.02 1.17 15 24 H 0.40 10.99 6.83 -92.71 -0.63 10.36 15 25 H 0.41 6.84 8.84 -92.71 -0.82 6.02 15 26 H 0.17 2.38 8.06 -2.91 -0.02 2.35 15 27 H 0.17 2.66 8.06 -2.91 -0.02 2.64 15 Total: -1.00 -64.85 267.17 1.50 -63.35 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.91 Total: 23.86 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 2.66 Total: -13.11 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -2.12 Total: -117.94 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 17 Polarization: -4.06 SS G_CDS: -0.15 Total: -4.21 kcal Total: -64.85 1.50 -63.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059054286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.540 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds