Wall clock time and date at job start Mon Mar 30 2020 04:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46905 * 2 1 4 4 C 1.53001 * 109.46969 * 239.99720 * 2 1 3 5 5 C 1.50694 * 109.47012 * 175.00098 * 4 2 1 6 6 O 1.20822 * 120.00118 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99781 * 179.97438 * 5 4 2 8 8 S 1.81404 * 109.46921 * 120.00008 * 2 1 3 9 9 O 1.42094 * 109.47164 * 61.38534 * 8 2 1 10 10 C 1.81399 * 102.99917 * 304.99779 * 8 2 1 11 11 C 1.53005 * 109.47104 * 182.90570 * 10 8 2 12 12 C 1.50695 * 115.55192 * 64.95298 * 11 10 8 13 13 H 1.08000 * 120.00083 * 264.65766 * 12 11 10 14 14 C 1.37879 * 120.00140 * 84.65658 * 12 11 10 15 15 N 1.31514 * 119.99705 * 351.46776 * 14 12 11 16 16 Si 1.86793 * 120.00318 * 171.46645 * 14 12 11 17 17 H 1.48507 * 109.47303 * 60.00124 * 16 14 12 18 18 H 1.48500 * 109.47438 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47183 * 300.00024 * 16 14 12 20 20 C 1.53004 * 117.49366 * 279.28680 * 11 10 8 21 21 C 1.52996 * 117.49529 * 210.62914 * 11 10 8 22 22 H 1.08990 * 109.47098 * 60.00245 * 1 2 3 23 23 H 1.09004 * 109.46892 * 299.99894 * 1 2 3 24 24 H 1.09004 * 109.47282 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46867 * 295.00563 * 4 2 1 26 26 H 1.08995 * 109.47076 * 54.99735 * 4 2 1 27 27 H 0.96704 * 116.99814 * 180.02562 * 7 5 4 28 28 H 1.09006 * 109.47015 * 302.89944 * 10 8 2 29 29 H 1.08998 * 109.47253 * 62.90103 * 10 8 2 30 30 H 0.97001 * 120.00353 * 185.02585 * 15 14 12 31 31 H 1.08995 * 117.49870 * 359.97438 * 20 11 10 32 32 H 1.09003 * 117.49693 * 145.02346 * 20 11 10 33 33 H 1.09003 * 117.49336 * 214.97698 * 21 11 10 34 34 H 1.08996 * 117.50490 * 359.96924 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 8 4.1427 -0.0235 -0.4474 7 8 4.2121 -1.1784 -2.3301 8 16 2.1347 -0.8552 1.4812 9 8 1.6876 -2.2038 1.4651 10 6 1.3149 0.0375 2.8309 11 6 1.7840 -0.5259 4.1739 12 6 3.2438 -0.3244 4.4891 13 1 3.9568 -1.1047 4.2675 14 6 3.6691 0.8562 5.0603 15 7 2.8368 1.8679 5.1763 16 14 5.4274 1.0188 5.6694 17 1 6.3650 0.8101 4.5368 18 1 5.6311 2.3757 6.2375 19 1 5.6841 -0.0002 6.7186 20 6 1.1264 -1.8165 4.6669 21 6 0.7965 -0.4827 5.3417 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7515 -1.7716 -1.2055 26 1 1.6054 -0.2619 -2.1369 27 1 5.1745 -1.0840 -2.3275 28 1 1.5680 1.0961 2.7728 29 1 0.2352 -0.0834 2.7434 30 1 3.1543 2.7213 5.5105 31 1 0.3594 -2.2638 4.0347 32 1 1.7496 -2.5195 5.2196 33 1 1.2028 -0.3088 6.3381 34 1 -0.1871 -0.0525 5.1535 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085159494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:15 Heat of formation + Delta-G solvation = -112.543300 kcal Electronic energy + Delta-G solvation = -18048.140969 eV Core-core repulsion = 15073.528249 eV Total energy + Delta-G solvation = -2974.612720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16682 -36.52618 -36.20543 -34.97300 -34.35286 -31.95751 -28.88148 -27.30645 -25.30622 -22.98196 -21.07211 -20.81593 -19.19269 -17.99238 -17.05672 -16.58336 -16.25338 -15.86006 -14.93147 -14.61610 -14.20638 -13.73945 -13.72802 -13.09026 -12.77531 -12.39886 -12.36859 -12.11348 -11.92626 -11.58574 -11.43961 -11.18926 -11.00577 -10.89386 -10.71431 -10.48471 -10.42568 -10.16964 -9.80633 -9.28392 -8.80347 -8.45968 -8.05880 -7.14813 -6.05131 -4.14409 2.25365 2.27145 3.04694 3.33942 3.37907 3.41706 3.51623 4.40567 4.49307 4.73872 5.07774 5.20877 5.23665 5.41065 5.44870 5.50239 5.57963 5.81849 5.97141 6.06189 6.18599 6.32213 6.47405 6.53584 6.62161 6.83290 6.87971 7.12714 7.47572 7.52499 7.86650 7.93111 8.38541 8.89287 9.53627 11.02727 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.007779 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.133960 B = 3598.748001 C = 4400.153315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.430 4.430 3 H 0.127 0.873 4 C -0.086 4.086 5 C 0.469 3.531 6 O -0.491 6.491 7 O -0.521 6.521 8 S 1.270 4.730 9 O -0.863 6.863 10 C -0.374 4.374 11 C 0.062 3.938 12 C -0.508 4.508 13 H 0.066 0.934 14 C 0.079 3.921 15 N -0.874 5.874 16 Si 0.887 3.113 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.210 4.210 21 C -0.154 4.154 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.410 0.590 28 H 0.121 0.879 29 H 0.055 0.945 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -0.872 -12.503 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.544 4.544 3 H 0.145 0.855 4 C -0.125 4.125 5 C 0.311 3.689 6 O -0.378 6.378 7 O -0.334 6.334 8 S 1.468 4.532 9 O -0.858 6.858 10 C -0.514 4.514 11 C 0.061 3.939 12 C -0.546 4.546 13 H 0.084 0.916 14 C -0.125 4.125 15 N -0.510 5.510 16 Si 0.714 3.286 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.193 4.193 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.269 0.731 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.429 -1.335 -12.158 12.239 hybrid contribution -0.822 0.360 0.241 0.929 sum -0.393 -0.976 -11.917 11.963 Atomic orbital electron populations 1.21807 0.93094 1.02387 1.02946 1.27692 1.01900 1.11347 1.13466 0.85459 1.20973 0.87469 1.04112 0.99898 1.23528 0.91705 0.75126 0.78582 1.90803 1.70069 1.39016 1.37901 1.84516 1.27118 1.72942 1.48780 1.72140 1.13050 0.83781 0.84183 1.92910 1.81378 1.27394 1.84156 1.27086 1.04409 1.10557 1.09368 1.18259 0.93728 0.93633 0.88323 1.20432 0.90323 1.01884 1.41962 0.91626 1.24964 0.97279 0.95719 0.94572 1.69977 1.34608 1.01597 1.44788 0.86724 0.85017 0.77165 0.79661 1.19531 1.21264 1.20160 1.23066 1.04048 0.91927 1.05751 1.22578 0.98739 0.98906 0.99067 0.92380 0.91411 0.92377 0.87522 0.87531 0.73124 0.86103 0.92625 0.92784 0.91606 0.90170 0.89938 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.95 37.16 0.33 -1.68 16 2 C -0.43 -6.38 2.50 -26.73 -0.07 -6.45 16 3 H 0.13 1.76 7.96 -51.93 -0.41 1.34 16 4 C -0.09 -1.08 5.28 -27.89 -0.15 -1.23 16 5 C 0.47 6.12 8.04 36.00 0.29 6.41 16 6 O -0.49 -7.76 15.55 -18.75 -0.29 -8.05 16 7 O -0.52 -5.25 13.42 -39.26 -0.53 -5.77 16 8 S 1.27 24.88 10.81 -107.50 -1.16 23.72 16 9 O -0.86 -20.03 18.07 -35.23 -0.64 -20.67 16 10 C -0.37 -8.20 5.10 37.16 0.19 -8.02 16 11 C 0.06 1.55 1.32 -155.66 -0.20 1.35 16 12 C -0.51 -13.44 8.47 -34.44 -0.29 -13.73 16 13 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 14 C 0.08 2.09 5.38 -17.82 -0.10 1.99 16 15 N -0.87 -23.68 13.01 55.43 0.72 -22.96 16 16 Si 0.89 20.35 29.55 -169.99 -5.02 15.32 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.21 -5.02 9.96 -26.69 -0.27 -5.28 16 21 C -0.15 -3.73 9.52 -26.69 -0.25 -3.98 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.98 6.58 -51.93 -0.34 0.63 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.11 1.38 8.09 -51.93 -0.42 0.96 16 26 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.41 2.36 9.10 45.56 0.41 2.77 16 28 H 0.12 2.69 8.14 -51.92 -0.42 2.26 16 29 H 0.05 1.16 7.02 -51.93 -0.36 0.79 16 30 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -32.29 306.27 -6.87 -39.16 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.05 Total: 5.24 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: -0.52 Total: -30.62 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.72 Total: -22.96 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.46 Total: -34.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 24.88 SS G_CDS: -1.16 Total: 23.72 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.29 -6.87 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085159494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.379 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds