Wall clock time and date at job start Mon Mar 30 2020 04:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46905 * 2 1 4 4 C 1.53001 * 109.46969 * 239.99720 * 2 1 3 5 5 C 1.50694 * 109.47012 * 175.00098 * 4 2 1 6 6 O 1.20822 * 120.00118 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99781 * 179.97438 * 5 4 2 8 8 S 1.81404 * 109.46921 * 120.00008 * 2 1 3 9 9 O 1.42094 * 109.47164 * 61.38534 * 8 2 1 10 10 C 1.81399 * 102.99917 * 304.99779 * 8 2 1 11 11 C 1.53005 * 109.47104 * 182.90570 * 10 8 2 12 12 C 1.50695 * 115.55192 * 64.95298 * 11 10 8 13 13 H 1.08000 * 120.00083 * 264.65766 * 12 11 10 14 14 C 1.37879 * 120.00140 * 84.65658 * 12 11 10 15 15 N 1.31514 * 119.99705 * 351.46776 * 14 12 11 16 16 Si 1.86793 * 120.00318 * 171.46645 * 14 12 11 17 17 H 1.48507 * 109.47303 * 60.00124 * 16 14 12 18 18 H 1.48500 * 109.47438 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47183 * 300.00024 * 16 14 12 20 20 C 1.53004 * 117.49366 * 279.28680 * 11 10 8 21 21 C 1.52996 * 117.49529 * 210.62914 * 11 10 8 22 22 H 1.08990 * 109.47098 * 60.00245 * 1 2 3 23 23 H 1.09004 * 109.46892 * 299.99894 * 1 2 3 24 24 H 1.09004 * 109.47282 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46867 * 295.00563 * 4 2 1 26 26 H 1.08995 * 109.47076 * 54.99735 * 4 2 1 27 27 H 0.96704 * 116.99814 * 180.02562 * 7 5 4 28 28 H 1.09006 * 109.47015 * 302.89944 * 10 8 2 29 29 H 1.08998 * 109.47253 * 62.90103 * 10 8 2 30 30 H 0.97001 * 120.00353 * 185.02585 * 15 14 12 31 31 H 1.08995 * 117.49870 * 359.97438 * 20 11 10 32 32 H 1.09003 * 117.49693 * 145.02346 * 20 11 10 33 33 H 1.09003 * 117.49336 * 214.97698 * 21 11 10 34 34 H 1.08996 * 117.50490 * 359.96924 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 8 4.1427 -0.0235 -0.4474 7 8 4.2121 -1.1784 -2.3301 8 16 2.1347 -0.8552 1.4812 9 8 1.6876 -2.2038 1.4651 10 6 1.3149 0.0375 2.8309 11 6 1.7840 -0.5259 4.1739 12 6 3.2438 -0.3244 4.4891 13 1 3.9568 -1.1047 4.2675 14 6 3.6691 0.8562 5.0603 15 7 2.8368 1.8679 5.1763 16 14 5.4274 1.0188 5.6694 17 1 6.3650 0.8101 4.5368 18 1 5.6311 2.3757 6.2375 19 1 5.6841 -0.0002 6.7186 20 6 1.1264 -1.8165 4.6669 21 6 0.7965 -0.4827 5.3417 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7515 -1.7716 -1.2055 26 1 1.6054 -0.2619 -2.1369 27 1 5.1745 -1.0840 -2.3275 28 1 1.5680 1.0961 2.7728 29 1 0.2352 -0.0834 2.7434 30 1 3.1543 2.7213 5.5105 31 1 0.3594 -2.2638 4.0347 32 1 1.7496 -2.5195 5.2196 33 1 1.2028 -0.3088 6.3381 34 1 -0.1871 -0.0525 5.1535 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085159494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:15 Heat of formation + Delta-G solvation = -134.754824 kcal Electronic energy + Delta-G solvation = -18049.104133 eV Core-core repulsion = 15073.528249 eV Total energy + Delta-G solvation = -2975.575884 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16198 -38.43530 -37.14590 -36.58064 -35.54644 -33.97379 -30.15570 -28.89131 -27.29332 -24.07475 -23.00418 -21.97087 -21.03417 -18.96200 -18.52263 -18.03790 -17.56042 -17.27933 -16.58027 -16.18783 -15.87987 -15.40275 -15.00137 -14.72554 -14.11139 -13.82344 -13.68485 -13.43185 -13.28703 -13.18045 -12.92127 -12.74522 -12.56544 -12.40979 -12.29152 -12.16224 -12.01170 -11.63113 -11.51946 -11.03509 -10.72081 -10.43529 -9.87036 -8.72051 -8.05483 -6.20158 0.74509 1.27422 1.52280 1.53223 1.60028 1.96591 2.18630 2.49758 2.99754 3.23022 3.46910 3.58739 3.96953 4.14075 4.24792 4.41989 4.45525 4.50044 4.57753 4.60270 4.73220 4.77892 4.90467 4.97369 4.99682 5.11195 5.18637 5.53382 5.63680 5.70886 5.83867 6.39723 6.85951 7.07420 7.50020 9.02223 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.007779 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.133960 B = 3598.748001 C = 4400.153315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.414 4.414 3 H 0.143 0.857 4 C -0.089 4.089 5 C 0.472 3.528 6 O -0.526 6.526 7 O -0.512 6.512 8 S 1.266 4.734 9 O -0.906 6.906 10 C -0.372 4.372 11 C 0.044 3.956 12 C -0.523 4.523 13 H 0.060 0.940 14 C 0.041 3.959 15 N -0.898 5.898 16 Si 0.942 3.058 17 H -0.260 1.260 18 H -0.283 1.283 19 H -0.278 1.278 20 C -0.204 4.204 21 C -0.156 4.156 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.149 0.851 27 H 0.430 0.570 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -0.373 -14.362 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.532 4.532 3 H 0.161 0.839 4 C -0.127 4.127 5 C 0.315 3.685 6 O -0.416 6.416 7 O -0.326 6.326 8 S 1.468 4.532 9 O -0.901 6.901 10 C -0.511 4.511 11 C 0.042 3.958 12 C -0.561 4.561 13 H 0.078 0.922 14 C -0.162 4.162 15 N -0.534 5.534 16 Si 0.767 3.233 17 H -0.185 1.185 18 H -0.208 1.208 19 H -0.203 1.203 20 C -0.242 4.242 21 C -0.195 4.195 22 H 0.112 0.888 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.167 0.833 27 H 0.292 0.708 28 H 0.132 0.868 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.802 -0.871 -13.992 14.042 hybrid contribution -0.949 0.215 0.663 1.178 sum -0.147 -0.656 -13.329 13.346 Atomic orbital electron populations 1.21835 0.92052 1.02144 1.04345 1.27426 1.02948 1.11436 1.11379 0.83880 1.21062 0.87559 1.04004 1.00079 1.23594 0.92001 0.74460 0.78427 1.90805 1.70770 1.40780 1.39231 1.84465 1.28882 1.71950 1.47318 1.71623 1.13340 0.82919 0.85310 1.92854 1.82427 1.29414 1.85431 1.26991 1.04743 1.10191 1.09203 1.18473 0.93424 0.94138 0.89737 1.20625 0.91136 1.01980 1.42332 0.92211 1.25576 1.00710 0.95368 0.94529 1.70062 1.36096 1.01898 1.45379 0.85858 0.81137 0.77043 0.79275 1.18451 1.20828 1.20317 1.23015 1.03952 0.91687 1.05524 1.22522 0.99202 0.99419 0.98366 0.88753 0.92336 0.93458 0.87792 0.83330 0.70832 0.86833 0.92306 0.92693 0.91269 0.90314 0.91458 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.95 71.98 0.64 -3.06 16 2 C -0.41 -11.37 2.50 30.60 0.08 -11.29 16 3 H 0.14 3.57 7.96 -2.39 -0.02 3.55 16 4 C -0.09 -1.95 5.28 29.85 0.16 -1.80 16 5 C 0.47 11.18 8.04 71.23 0.57 11.75 16 6 O -0.53 -15.84 15.55 21.98 0.34 -15.50 16 7 O -0.51 -8.83 13.42 -51.43 -0.69 -9.52 16 8 S 1.27 49.30 10.81 -56.49 -0.61 48.69 16 9 O -0.91 -42.25 18.07 -148.98 -2.69 -44.94 16 10 C -0.37 -16.41 5.10 71.98 0.37 -16.05 16 11 C 0.04 2.20 1.32 -52.93 -0.07 2.13 16 12 C -0.52 -27.92 8.47 25.60 0.22 -27.70 16 13 H 0.06 3.18 7.83 -2.91 -0.02 3.16 16 14 C 0.04 2.13 5.38 84.66 0.46 2.58 16 15 N -0.90 -48.79 13.01 21.45 0.28 -48.51 16 16 Si 0.94 41.51 29.55 68.60 2.03 43.54 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 C -0.20 -9.86 9.96 30.62 0.30 -9.56 16 21 C -0.16 -7.67 9.52 30.62 0.29 -7.38 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.59 6.58 -2.39 -0.02 1.57 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 2.43 8.09 -2.38 -0.02 2.41 16 26 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.43 3.78 9.10 -74.05 -0.67 3.11 16 28 H 0.11 5.09 8.14 -2.39 -0.02 5.07 16 29 H 0.06 2.46 7.02 -2.39 -0.02 2.45 16 30 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 31 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.08 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.07 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -69.03 306.27 2.10 -66.93 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.43 Total: 19.68 kcal Atomic # 6 Polarization: -63.38 SS G_CDS: 3.02 Total: -60.36 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.28 Total: -48.51 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -3.04 Total: -69.96 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 49.30 SS G_CDS: -0.61 Total: 48.69 kcal Total: -69.03 2.10 -66.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085159494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.827 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds