Wall clock time and date at job start Mon Mar 30 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30970 * 125.77713 * 2 1 4 4 N 1.40065 * 108.47721 * 179.76694 * 3 2 1 5 5 C 1.46498 * 126.08542 * 180.26911 * 4 3 2 6 6 C 1.36078 * 107.83406 * 0.42285 * 4 3 2 7 7 N 1.39712 * 126.28544 * 179.84618 * 6 4 3 8 8 S 1.65601 * 120.00169 * 240.65839 * 7 6 4 9 9 O 1.42097 * 106.40079 * 179.73163 * 8 7 6 10 10 O 1.42104 * 106.40094 * 312.65160 * 8 7 6 11 11 C 1.76204 * 107.21787 * 66.19037 * 8 7 6 12 12 H 1.07993 * 119.99675 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99407 * 179.97438 * 11 8 7 14 14 N 1.31507 * 120.00790 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 119.99452 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46963 * 60.00089 * 15 13 11 17 17 H 1.48496 * 109.46828 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46758 * 299.99945 * 15 13 11 19 19 C 1.36404 * 107.43160 * 359.58444 * 6 4 3 20 20 N 1.41402 * 126.09582 * 180.29897 * 19 6 4 21 21 H 1.09001 * 109.47162 * 269.97530 * 1 2 3 22 22 H 1.08996 * 109.47277 * 29.97210 * 1 2 3 23 23 H 1.08995 * 109.47358 * 149.97645 * 1 2 3 24 24 H 1.08996 * 109.47202 * 265.13219 * 5 4 3 25 25 H 1.09003 * 109.46799 * 25.13157 * 5 4 3 26 26 H 1.08999 * 109.47298 * 145.12741 * 5 4 3 27 27 H 0.97004 * 119.99987 * 60.38107 * 7 6 4 28 28 H 0.96995 * 120.00444 * 179.97438 * 14 13 11 29 29 H 0.96994 * 119.99918 * 359.97438 * 20 19 6 30 30 H 0.97000 * 119.99434 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0626 0.0000 4 7 3.6099 0.6460 0.0054 5 6 4.7858 1.5198 0.0128 6 6 3.6226 -0.7147 -0.0009 7 7 4.7565 -1.5309 -0.0015 8 16 5.0215 -2.5792 -1.2558 9 8 6.2404 -3.2501 -0.9673 10 8 3.7934 -3.2593 -1.4766 11 6 5.3173 -1.6065 -2.6949 12 1 5.3003 -0.5286 -2.6309 13 6 5.5714 -2.2216 -3.9023 14 7 5.5936 -3.5342 -3.9800 15 14 5.8858 -1.1904 -5.4279 16 1 7.0750 -0.3290 -5.2067 17 1 6.1304 -2.0846 -6.5880 18 1 4.7011 -0.3379 -5.7018 19 6 2.3251 -1.1354 -0.0005 20 7 1.8852 -2.4793 0.0000 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 5.1342 1.6687 -1.0092 25 1 4.5204 2.4824 0.4500 26 1 5.5775 1.0586 0.6031 27 1 5.3907 -1.4807 0.7309 28 1 5.7720 -3.9669 -4.8295 29 1 2.5326 -3.2015 -0.0002 30 1 0.9359 -2.6787 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087419520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:49 Heat of formation + Delta-G solvation = -37.161346 kcal Electronic energy + Delta-G solvation = -18298.946728 eV Core-core repulsion = 15256.355223 eV Total energy + Delta-G solvation = -3042.591506 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 260.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08063 -37.51968 -36.27984 -36.04287 -35.50868 -35.13711 -32.81191 -30.42477 -28.36816 -28.26694 -25.76607 -22.05213 -21.16149 -20.90430 -19.39500 -18.49116 -18.43455 -17.43036 -17.05143 -16.36189 -16.06391 -15.86862 -15.59839 -14.94079 -14.33173 -14.02797 -13.97321 -13.57430 -13.40118 -13.11445 -13.07152 -13.03668 -12.74860 -12.53577 -12.41353 -12.36669 -12.11876 -11.38390 -11.27943 -11.14011 -10.88582 -9.77789 -8.80524 -7.85449 -7.51042 0.07804 0.91556 1.28857 1.31104 1.43307 1.62254 1.97018 2.16645 2.54517 2.81628 3.36796 3.60560 3.84582 4.05262 4.37151 4.43021 4.48404 4.61018 4.68648 4.75393 4.92812 5.07467 5.17404 5.23166 5.65698 5.80360 5.87813 6.41369 6.74521 6.77171 6.95299 7.41980 8.16358 Molecular weight = 260.07amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.008788 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.994272 B = 3185.351976 C = 3439.831726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.027 3.973 3 N -0.280 5.280 4 N -0.379 5.379 5 C 0.097 3.903 6 C 0.199 3.801 7 N -1.029 6.029 8 S 2.721 3.279 9 O -1.033 7.033 10 O -1.002 7.002 11 C -1.037 5.037 12 H 0.107 0.893 13 C 0.078 3.922 14 N -0.886 5.886 15 Si 0.981 3.019 16 H -0.249 1.249 17 H -0.260 1.260 18 H -0.259 1.259 19 C 0.066 3.934 20 N -0.855 5.855 21 H 0.094 0.906 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.421 0.579 28 H 0.300 0.700 29 H 0.398 0.602 30 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 8.377 6.559 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.141 4.141 3 N -0.107 5.107 4 N -0.172 5.172 5 C -0.044 4.044 6 C -0.023 4.023 7 N -0.782 5.782 8 S 2.822 3.178 9 O -1.023 7.023 10 O -0.991 6.991 11 C -1.170 5.170 12 H 0.125 0.875 13 C -0.136 4.136 14 N -0.517 5.517 15 Si 0.800 3.200 16 H -0.173 1.173 17 H -0.184 1.184 18 H -0.183 1.183 19 C -0.048 4.048 20 N -0.408 5.408 21 H 0.112 0.888 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.130 0.870 26 H 0.115 0.885 27 H 0.258 0.742 28 H 0.110 0.890 29 H 0.231 0.769 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.510 8.578 6.438 12.057 hybrid contribution 0.858 -0.492 -0.790 1.266 sum -4.652 8.085 5.647 10.904 Atomic orbital electron populations 1.20221 0.83795 1.04055 1.04101 1.22351 0.98511 0.88183 1.05079 1.77066 0.86174 1.22382 1.25068 1.48396 1.05667 1.03180 1.59913 1.22043 0.83602 0.94904 1.03815 1.16629 0.86764 0.82765 1.16174 1.52759 1.30897 1.55451 1.39123 1.00378 0.72003 0.72678 0.72768 1.93346 1.48532 1.74346 1.86036 1.93217 1.47132 1.73445 1.85297 1.30755 1.64611 1.07648 1.14030 0.87472 1.25834 0.88296 0.96079 1.03404 1.69933 1.40600 1.10497 1.30712 0.85282 0.80228 0.78826 0.75650 1.17303 1.18353 1.18291 1.17654 0.90488 0.88159 1.08543 1.42046 1.09752 1.01498 1.87470 0.88783 0.89948 0.89870 0.91128 0.87042 0.88507 0.74205 0.89005 0.76858 0.76992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.44 10.29 71.23 0.73 -0.71 16 2 C 0.03 0.90 7.21 43.10 0.31 1.21 16 3 N -0.28 -9.78 12.56 -47.27 -0.59 -10.38 16 4 N -0.38 -13.32 4.05 -365.32 -1.48 -14.80 16 5 C 0.10 2.52 11.42 127.77 1.46 3.98 16 6 C 0.20 7.89 7.18 131.05 0.94 8.84 16 7 N -1.03 -41.33 5.81 -54.55 -0.32 -41.64 16 8 S 2.72 140.89 5.00 -56.49 -0.28 140.60 16 9 O -1.03 -59.26 18.02 -128.00 -2.31 -61.57 16 10 O -1.00 -54.78 13.87 -128.00 -1.78 -56.55 16 11 C -1.04 -56.82 9.70 67.73 0.66 -56.16 16 12 H 0.11 5.48 7.81 -2.91 -0.02 5.46 16 13 C 0.08 4.28 5.46 84.65 0.46 4.74 16 14 N -0.89 -51.60 13.19 21.45 0.28 -51.32 16 15 Si 0.98 41.43 29.54 68.60 2.03 43.46 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 C 0.07 2.54 6.90 37.58 0.26 2.80 16 20 N -0.86 -31.17 8.41 -51.11 -0.43 -31.59 16 21 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.08 1.72 7.68 -2.39 -0.02 1.70 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.42 14.10 8.95 -96.74 -0.87 13.23 16 28 H 0.30 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.40 16.15 6.24 -92.71 -0.58 15.57 16 30 H 0.40 11.72 8.35 -92.71 -0.77 10.95 16 Total: -1.00 -75.12 277.99 -1.06 -76.17 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -1.01 Total: 42.91 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.82 Total: -35.29 kcal Atomic # 7 Polarization: -147.19 SS G_CDS: -2.54 Total: -149.73 kcal Atomic # 8 Polarization: -114.04 SS G_CDS: -4.08 Total: -118.12 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 140.89 SS G_CDS: -0.28 Total: 140.60 kcal Total: -75.12 -1.06 -76.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087419520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.012 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds