Wall clock time and date at job start Mon Mar 30 2020 04:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47083 * 239.99976 * 3 2 1 5 5 H 1.48504 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47289 * 120.00137 * 3 2 1 7 7 C 1.37874 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00434 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.46957 * 299.99460 * 9 7 2 11 11 F 1.39899 * 109.47132 * 59.99943 * 9 7 2 12 12 S 1.81406 * 109.47085 * 179.97438 * 9 7 2 13 13 O 1.42095 * 110.54029 * 68.37588 * 12 9 7 14 14 O 1.42101 * 110.54001 * 291.62269 * 12 9 7 15 15 C 1.76207 * 104.44570 * 180.02562 * 12 9 7 16 16 C 1.38282 * 119.97202 * 90.00395 * 15 12 9 17 17 C 1.38240 * 120.11355 * 180.02562 * 16 15 12 18 18 C 1.38169 * 120.05585 * 0.02562 * 17 16 15 19 19 C 1.38719 * 119.93968 * 359.97299 * 18 17 16 20 20 O 1.35905 * 120.05115 * 179.97438 * 19 18 17 21 21 C 1.38124 * 119.97099 * 270.27245 * 15 12 9 22 22 H 0.96993 * 120.00099 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.94801 * 359.97438 * 16 15 12 24 24 H 1.08003 * 119.97763 * 179.97438 * 17 16 15 25 25 H 1.07996 * 120.03568 * 179.97438 * 18 17 16 26 26 H 0.96701 * 113.99759 * 90.00852 * 20 19 18 27 27 H 1.08001 * 120.02871 * 0.02562 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 9 0.4471 -2.5735 -1.1420 12 16 2.4299 -3.8780 0.0005 13 8 3.1266 -3.9382 1.2375 14 8 3.1266 -3.9383 -1.2365 15 6 1.4186 -5.3209 -0.0002 16 6 1.0226 -5.8864 -1.1984 17 6 0.2288 -7.0181 -1.2024 18 6 -0.1714 -7.5869 -0.0086 19 6 0.2245 -7.0216 1.1947 20 8 -0.1682 -7.5789 2.3704 21 6 1.0175 -5.8831 1.1960 22 1 -0.4850 0.8400 -0.0004 23 1 1.3333 -5.4426 -2.1328 24 1 -0.0796 -7.4577 -2.1395 25 1 -0.7919 -8.4708 -0.0121 26 1 0.4410 -8.2479 2.7114 27 1 1.3231 -5.4383 2.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260594707.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:04 Heat of formation + Delta-G solvation = -133.125727 kcal Electronic energy + Delta-G solvation = -17359.634387 eV Core-core repulsion = 14124.835746 eV Total energy + Delta-G solvation = -3234.798641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.035 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.28535 -39.61962 -36.70606 -36.30648 -35.18230 -33.23074 -31.20203 -29.73142 -28.56364 -23.78389 -23.01186 -22.59063 -19.21043 -17.92638 -17.31290 -16.67882 -16.35796 -15.98818 -15.57295 -15.14994 -14.76988 -14.68519 -14.01553 -13.74139 -13.57155 -12.63558 -12.38202 -12.37667 -11.86512 -11.80550 -11.36343 -11.27683 -11.23948 -11.09411 -11.07568 -10.59846 -10.17126 -9.62434 -9.41495 -9.08763 -8.79732 -8.68543 -6.52900 -4.78407 0.66998 1.01075 1.26174 3.15303 3.17681 3.21847 3.37818 3.58447 4.08116 4.11151 4.52118 4.68954 4.83332 4.95416 5.04751 5.26960 5.48249 5.66318 5.85234 6.00258 6.17437 6.25787 6.29816 6.58700 6.70889 6.97764 7.37616 7.57016 8.23639 8.98890 10.54140 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.033244 B = 0.006491 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.049590 B = 4312.405258 C = 4362.717278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.091 3.909 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.178 4.178 10 H 0.099 0.901 11 F -0.192 7.192 12 S 2.440 3.560 13 O -0.946 6.946 14 O -0.943 6.943 15 C -0.634 4.634 16 C -0.025 4.025 17 C -0.128 4.128 18 C -0.101 4.101 19 C 0.078 3.922 20 O -0.496 6.496 21 C -0.050 4.050 22 H 0.276 0.724 23 H 0.145 0.855 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.388 0.612 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -11.769 0.864 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.120 4.120 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.617 4.617 8 H 0.102 0.898 9 C -0.308 4.308 10 H 0.116 0.884 11 F -0.173 7.173 12 S 2.621 3.379 13 O -0.943 6.943 14 O -0.940 6.940 15 C -0.717 4.717 16 C -0.044 4.044 17 C -0.146 4.146 18 C -0.120 4.120 19 C 0.033 3.967 20 O -0.306 6.306 21 C -0.069 4.069 22 H 0.086 0.914 23 H 0.163 0.837 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.244 0.756 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.485 -11.371 0.782 11.408 hybrid contribution -0.282 0.195 0.058 0.348 sum -0.768 -11.176 0.840 11.234 Atomic orbital electron populations 1.69979 1.06464 1.28706 1.43252 1.25026 0.95075 1.00119 0.91797 0.86260 0.79638 0.80327 0.79815 1.18981 1.20385 1.18984 1.20861 0.93697 0.88308 1.58867 0.89815 1.28512 1.01409 1.10572 0.90261 0.88377 1.92813 1.75725 1.96904 1.51845 1.08303 0.78391 0.76428 0.74803 1.93478 1.70294 1.86117 1.44389 1.93465 1.70440 1.85962 1.44139 1.31008 1.19328 1.22946 0.98464 1.21053 0.92365 0.93710 0.97235 1.21171 0.98841 0.96675 0.97960 1.21638 0.98566 0.99640 0.92135 1.18470 0.97972 0.94815 0.85449 1.84858 1.50759 1.58752 1.36193 1.21231 0.92877 0.94949 0.97830 0.91429 0.83704 0.84773 0.85022 0.75631 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.60 12.95 55.43 0.72 -22.88 15 2 C 0.09 2.44 5.42 -17.82 -0.10 2.35 15 3 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 15 7 C -0.58 -15.57 8.88 -34.44 -0.31 -15.88 15 8 H 0.08 2.15 7.71 -52.49 -0.40 1.75 15 9 C -0.18 -4.37 3.76 36.00 0.14 -4.23 15 10 H 0.10 2.34 8.14 -51.93 -0.42 1.92 15 11 F -0.19 -4.93 16.66 2.25 0.04 -4.89 15 12 S 2.44 52.64 4.87 -107.50 -0.52 52.12 15 13 O -0.95 -21.45 17.13 -57.54 -0.99 -22.44 15 14 O -0.94 -22.05 17.12 -57.54 -0.99 -23.04 15 15 C -0.63 -11.58 5.65 -39.61 -0.22 -11.81 15 16 C -0.02 -0.41 9.47 -39.56 -0.37 -0.78 15 17 C -0.13 -1.69 10.04 -39.61 -0.40 -2.09 15 18 C -0.10 -1.29 9.99 -39.43 -0.39 -1.68 15 19 C 0.08 1.12 6.70 -39.22 -0.26 0.85 15 20 O -0.50 -6.04 13.50 -19.44 -0.26 -6.30 15 21 C -0.05 -0.83 9.41 -39.44 -0.37 -1.20 15 22 H 0.28 7.07 8.31 -40.82 -0.34 6.73 15 23 H 0.15 2.28 7.57 -52.49 -0.40 1.89 15 24 H 0.13 1.33 8.06 -52.48 -0.42 0.90 15 25 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 26 H 0.39 2.67 9.06 45.56 0.41 3.08 15 27 H 0.15 2.32 7.58 -52.49 -0.40 1.92 15 LS Contribution 266.91 15.07 4.02 4.02 Total: -1.00 -33.38 266.91 -6.48 -39.86 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -1.19 Total: 2.87 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: -2.29 Total: -34.47 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.72 Total: -22.88 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -2.23 Total: -51.78 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.04 Total: -4.89 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -0.52 Total: 52.12 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.38 -6.48 -39.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594707.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.266 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds