Wall clock time and date at job start Mon Mar 30 2020 04:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47083 * 239.99976 * 3 2 1 5 5 H 1.48504 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47289 * 120.00137 * 3 2 1 7 7 C 1.37874 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00434 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.46957 * 299.99460 * 9 7 2 11 11 F 1.39899 * 109.47132 * 59.99943 * 9 7 2 12 12 S 1.81406 * 109.47085 * 179.97438 * 9 7 2 13 13 O 1.42095 * 110.54029 * 68.37588 * 12 9 7 14 14 O 1.42101 * 110.54001 * 291.62269 * 12 9 7 15 15 C 1.76207 * 104.44570 * 180.02562 * 12 9 7 16 16 C 1.38282 * 119.97202 * 90.00395 * 15 12 9 17 17 C 1.38240 * 120.11355 * 180.02562 * 16 15 12 18 18 C 1.38169 * 120.05585 * 0.02562 * 17 16 15 19 19 C 1.38719 * 119.93968 * 359.97299 * 18 17 16 20 20 O 1.35905 * 120.05115 * 179.97438 * 19 18 17 21 21 C 1.38124 * 119.97099 * 270.27245 * 15 12 9 22 22 H 0.96993 * 120.00099 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.94801 * 359.97438 * 16 15 12 24 24 H 1.08003 * 119.97763 * 179.97438 * 17 16 15 25 25 H 1.07996 * 120.03568 * 179.97438 * 18 17 16 26 26 H 0.96701 * 113.99759 * 90.00852 * 20 19 18 27 27 H 1.08001 * 120.02871 * 0.02562 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 9 0.4471 -2.5735 -1.1420 12 16 2.4299 -3.8780 0.0005 13 8 3.1266 -3.9382 1.2375 14 8 3.1266 -3.9383 -1.2365 15 6 1.4186 -5.3209 -0.0002 16 6 1.0226 -5.8864 -1.1984 17 6 0.2288 -7.0181 -1.2024 18 6 -0.1714 -7.5869 -0.0086 19 6 0.2245 -7.0216 1.1947 20 8 -0.1682 -7.5789 2.3704 21 6 1.0175 -5.8831 1.1960 22 1 -0.4850 0.8400 -0.0004 23 1 1.3333 -5.4426 -2.1328 24 1 -0.0796 -7.4577 -2.1395 25 1 -0.7919 -8.4708 -0.0121 26 1 0.4410 -8.2479 2.7114 27 1 1.3231 -5.4383 2.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260594707.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:04 Heat of formation + Delta-G solvation = -159.488709 kcal Electronic energy + Delta-G solvation = -17360.777572 eV Core-core repulsion = 14124.835746 eV Total energy + Delta-G solvation = -3235.941825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.035 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.25686 -40.72650 -38.16449 -37.72678 -37.00967 -35.23393 -32.38624 -30.87507 -30.54183 -25.65718 -24.35372 -23.73427 -20.54856 -19.64761 -19.06790 -18.19291 -17.88545 -17.50918 -16.95836 -16.73073 -16.55616 -15.91563 -15.79785 -15.43718 -14.83848 -14.45306 -13.80645 -13.68249 -13.51242 -13.26286 -13.17771 -13.15518 -12.91888 -12.85685 -12.43016 -12.32817 -11.59637 -11.46584 -11.09284 -10.81158 -10.38237 -9.84834 -8.52954 -6.87994 -1.00468 -0.27468 0.12632 1.37124 1.41427 1.50207 1.86947 2.22278 2.31075 2.76083 2.80258 3.03160 3.30754 3.76787 3.99750 4.05249 4.07696 4.32096 4.52586 4.65807 4.80588 4.97811 5.00217 5.16570 5.18255 5.35202 5.65941 6.21329 6.77167 6.95367 8.55837 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.033244 B = 0.006491 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.049590 B = 4312.405258 C = 4362.717278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.040 3.960 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.614 4.614 8 H 0.084 0.916 9 C -0.206 4.206 10 H 0.092 0.908 11 F -0.203 7.203 12 S 2.478 3.522 13 O -0.961 6.961 14 O -0.964 6.964 15 C -0.647 4.647 16 C -0.047 4.047 17 C -0.116 4.116 18 C -0.086 4.086 19 C 0.085 3.915 20 O -0.500 6.500 21 C -0.073 4.073 22 H 0.281 0.719 23 H 0.143 0.857 24 H 0.176 0.824 25 H 0.174 0.826 26 H 0.414 0.586 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 -13.720 0.777 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.167 4.167 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.653 4.653 8 H 0.102 0.898 9 C -0.334 4.334 10 H 0.110 0.890 11 F -0.185 7.185 12 S 2.661 3.339 13 O -0.958 6.958 14 O -0.961 6.961 15 C -0.736 4.736 16 C -0.066 4.066 17 C -0.134 4.134 18 C -0.104 4.104 19 C 0.039 3.961 20 O -0.313 6.313 21 C -0.093 4.093 22 H 0.090 0.910 23 H 0.161 0.839 24 H 0.193 0.807 25 H 0.192 0.808 26 H 0.273 0.727 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.944 -13.263 0.710 13.315 hybrid contribution -0.210 0.537 0.144 0.594 sum -1.154 -12.726 0.854 12.807 Atomic orbital electron populations 1.70063 1.07914 1.29831 1.44356 1.26010 0.95969 1.03762 0.90979 0.85336 0.78671 0.76081 0.80268 1.18458 1.19068 1.17821 1.21288 0.94167 0.90038 1.59763 0.89775 1.28696 1.02354 1.12655 0.89650 0.89024 1.92759 1.76131 1.97218 1.52346 1.06411 0.77474 0.76164 0.73829 1.93449 1.70791 1.86534 1.45021 1.93428 1.71128 1.86488 1.45089 1.30250 1.21289 1.21730 1.00378 1.21278 0.93627 0.95366 0.96323 1.21614 0.96783 0.94893 1.00141 1.22122 0.97287 1.00089 0.90897 1.18534 0.96633 0.93945 0.86942 1.84804 1.51502 1.59562 1.35481 1.21361 0.94327 0.96534 0.97052 0.91006 0.83904 0.80694 0.80822 0.72669 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.64 12.95 21.45 0.28 -50.36 15 2 C 0.04 2.21 5.42 84.65 0.46 2.67 15 3 Si 0.98 41.67 29.54 68.60 2.03 43.70 15 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 15 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 15 6 H -0.25 -10.30 7.11 99.48 0.71 -9.59 15 7 C -0.61 -34.33 8.88 25.60 0.23 -34.10 15 8 H 0.08 4.50 7.71 -2.91 -0.02 4.48 15 9 C -0.21 -10.59 3.76 71.24 0.27 -10.32 15 10 H 0.09 4.66 8.14 -2.39 -0.02 4.64 15 11 F -0.20 -10.90 16.66 44.97 0.75 -10.15 15 12 S 2.48 109.98 4.87 -56.49 -0.28 109.70 15 13 O -0.96 -44.68 17.13 -127.65 -2.19 -46.87 15 14 O -0.96 -46.15 17.12 -127.65 -2.19 -48.33 15 15 C -0.65 -23.53 5.65 22.25 0.13 -23.40 15 16 C -0.05 -1.47 9.47 22.28 0.21 -1.26 15 17 C -0.12 -2.62 10.04 22.25 0.22 -2.40 15 18 C -0.09 -1.78 9.99 22.37 0.22 -1.56 15 19 C 0.09 2.18 6.70 22.51 0.15 2.33 15 20 O -0.50 -10.45 13.50 -92.48 -1.25 -11.69 15 21 C -0.07 -2.38 9.41 22.36 0.21 -2.16 15 22 H 0.28 14.71 8.31 -92.71 -0.77 13.94 15 23 H 0.14 4.44 7.57 -2.91 -0.02 4.42 15 24 H 0.18 2.52 8.06 -2.91 -0.02 2.49 15 25 H 0.17 2.22 8.06 -2.91 -0.02 2.19 15 26 H 0.41 4.12 9.06 -74.06 -0.67 3.44 15 27 H 0.14 4.56 7.58 -2.91 -0.02 4.54 15 Total: -1.00 -73.57 266.91 -0.20 -73.77 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.55 Total: 10.45 kcal Atomic # 6 Polarization: -72.31 SS G_CDS: 2.10 Total: -70.21 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.28 Total: -50.36 kcal Atomic # 8 Polarization: -101.27 SS G_CDS: -5.62 Total: -106.89 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 0.75 Total: -10.15 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 109.98 SS G_CDS: -0.28 Total: 109.70 kcal Total: -73.57 -0.20 -73.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594707.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.722 kcal (2) G-P(sol) polarization free energy of solvation -73.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds