Wall clock time and date at job start Mon Mar 30 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.40274 * 126.06996 * 269.71735 * 11 10 9 13 13 O 1.35992 * 125.94577 * 0.02562 * 12 11 10 14 14 N 1.31106 * 108.10710 * 179.81916 * 12 11 10 15 15 N 1.40081 * 108.20493 * 0.43806 * 14 12 11 16 16 H 0.96990 * 125.98574 * 179.74086 * 15 14 12 17 17 C 1.34986 * 108.02181 * 359.71992 * 15 14 12 18 18 Br 1.89102 * 126.09779 * 180.02562 * 17 15 14 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 0.96701 * 114.00212 * 90.00303 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 6 1.0843 -5.6851 1.1361 13 8 1.2998 -5.3242 2.4294 14 7 0.4554 -6.7622 0.7322 15 7 0.4524 -6.7679 -0.6686 16 1 0.0585 -7.4498 -1.2348 17 6 1.0933 -5.6580 -1.0921 18 35 1.3822 -5.1568 -2.8925 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 0.5970 -4.7784 2.8079 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260892781.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:31 Heat of formation + Delta-G solvation = 25.492817 kcal Electronic energy + Delta-G solvation = -12094.365480 eV Core-core repulsion = 9669.893625 eV Total energy + Delta-G solvation = -2424.471855 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.990 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.18421 -36.94151 -34.13909 -32.19591 -31.60476 -29.76547 -28.28390 -24.77812 -21.85762 -21.37895 -19.68848 -17.64123 -17.27199 -16.22435 -15.24343 -14.44110 -14.21210 -13.75858 -13.03344 -12.55256 -12.18040 -11.84603 -11.24307 -10.99154 -10.94351 -10.67331 -10.48236 -10.08683 -9.76808 -9.62743 -9.13140 -9.06573 -8.32772 -8.08263 -5.97832 -3.99797 1.27221 1.67070 2.59871 2.91431 3.32870 3.40622 3.45028 4.33242 4.48665 5.20887 5.38394 5.46923 5.82496 6.39826 6.60332 6.72596 7.04344 7.12687 7.55415 7.70116 7.78878 7.84309 8.02288 8.43742 9.07068 9.64081 11.13339 Molecular weight = 259.99amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.007907 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.181304 B = 3540.098469 C = 4434.071723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.049 4.049 11 C -0.169 4.169 12 C 0.268 3.732 13 O -0.456 6.456 14 N -0.287 5.287 15 N -0.452 5.452 16 H 0.443 0.557 17 C 0.068 3.932 18 Br 0.026 6.974 19 H 0.259 0.741 20 H 0.019 0.981 21 H 0.012 0.988 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -12.469 -4.776 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.087 4.087 11 C -0.184 4.184 12 C 0.061 3.939 13 O -0.259 6.259 14 N -0.123 5.123 15 N -0.169 5.169 16 H 0.289 0.711 17 C -0.137 4.137 18 Br 0.108 6.892 19 H 0.069 0.931 20 H 0.037 0.963 21 H 0.031 0.969 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.701 -13.445 -5.027 14.371 hybrid contribution 0.001 1.440 -0.051 1.441 sum 0.702 -12.005 -5.078 13.053 Atomic orbital electron populations 1.69974 1.06032 1.26402 1.51082 1.25000 0.94806 0.99158 0.95400 0.86571 0.80222 0.83917 0.77516 1.19669 1.21091 1.21091 1.21270 0.93130 0.90831 1.50236 0.92477 1.19031 0.93667 0.90480 0.97264 1.20316 0.97890 0.88689 1.01824 1.20733 1.07417 1.00820 0.89400 1.19631 0.96781 0.91825 0.85669 1.84824 1.48158 1.72566 1.20397 1.77318 1.23641 1.22805 0.88565 1.45787 1.47371 1.19575 1.04205 0.71124 1.22429 1.04858 0.93014 0.93351 1.96799 1.95407 1.91298 1.05687 0.93133 0.96279 0.96941 0.91754 0.91477 0.73926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.80 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 14 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 14 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 14 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 14 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 14 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 14 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 14 9 C 0.03 0.83 4.96 -27.88 -0.14 0.69 14 10 C -0.05 -1.02 5.43 -27.88 -0.15 -1.17 14 11 C -0.17 -3.18 5.37 -104.87 -0.56 -3.74 14 12 C 0.27 4.80 8.41 -17.10 -0.14 4.66 14 13 O -0.46 -7.44 13.65 -19.72 -0.27 -7.71 14 14 N -0.29 -4.82 12.71 30.56 0.39 -4.43 14 15 N -0.45 -6.52 7.35 31.73 0.23 -6.29 14 16 H 0.44 4.65 8.96 -182.62 -1.64 3.01 14 17 C 0.07 1.11 7.69 -17.18 -0.13 0.98 14 18 Br 0.03 0.38 33.50 -68.01 -2.28 -1.90 14 19 H 0.26 7.25 8.31 -40.82 -0.34 6.91 14 20 H 0.02 0.51 8.14 -51.93 -0.42 0.09 14 21 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 14 22 H 0.06 1.31 7.76 -51.93 -0.40 0.90 14 23 H 0.07 1.40 8.14 -51.93 -0.42 0.97 14 24 H 0.40 4.96 9.06 45.56 0.41 5.37 14 LS Contribution 244.04 15.07 3.68 3.68 Total: -1.00 -31.74 244.04 -6.51 -38.25 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.44 Total: -0.52 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.54 Total: -11.68 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 1.36 Total: -36.53 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.27 Total: -7.71 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 35 Polarization: 0.38 SS G_CDS: -2.28 Total: -1.90 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.74 -6.51 -38.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260892781.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.741 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds