Wall clock time and date at job start Mon Mar 30 2020 04:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.40274 * 126.06996 * 269.71735 * 11 10 9 13 13 O 1.35992 * 125.94577 * 0.02562 * 12 11 10 14 14 N 1.31106 * 108.10710 * 179.81916 * 12 11 10 15 15 N 1.40081 * 108.20493 * 0.43806 * 14 12 11 16 16 H 0.96990 * 125.98574 * 179.74086 * 15 14 12 17 17 C 1.34986 * 108.02181 * 359.71992 * 15 14 12 18 18 Br 1.89102 * 126.09779 * 180.02562 * 17 15 14 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 0.96701 * 114.00212 * 90.00303 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 6 1.0843 -5.6851 1.1361 13 8 1.2998 -5.3242 2.4294 14 7 0.4554 -6.7622 0.7322 15 7 0.4524 -6.7679 -0.6686 16 1 0.0585 -7.4498 -1.2348 17 6 1.0933 -5.6580 -1.0921 18 35 1.3822 -5.1568 -2.8925 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 0.5970 -4.7784 2.8079 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260892781.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:30 Heat of formation + Delta-G solvation = 0.411561 kcal Electronic energy + Delta-G solvation = -12095.453085 eV Core-core repulsion = 9669.893625 eV Total energy + Delta-G solvation = -2425.559460 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.990 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.50803 -38.21993 -36.01058 -33.97845 -33.01050 -31.16119 -29.92082 -26.66529 -23.37331 -23.02540 -21.14181 -19.04009 -18.62281 -18.24026 -16.63872 -16.37185 -15.62535 -15.11873 -14.70566 -14.34738 -14.03862 -13.23316 -13.06222 -12.83206 -12.48418 -12.24593 -12.00255 -11.67995 -11.60700 -11.24487 -11.06948 -10.48432 -10.40177 -9.52638 -8.12858 -6.22458 -0.02146 0.35780 1.24715 1.44216 1.45525 1.58046 1.70218 2.46888 3.07129 3.20966 3.82665 4.07655 4.42121 4.88255 4.93861 4.99318 5.31120 5.58981 5.80397 5.91469 5.94761 6.29549 6.32139 6.61256 6.93682 7.46082 8.98621 Molecular weight = 259.99amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.007907 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.181304 B = 3540.098469 C = 4434.071723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.042 3.958 10 C -0.031 4.031 11 C -0.205 4.205 12 C 0.261 3.739 13 O -0.462 6.462 14 N -0.293 5.293 15 N -0.430 5.430 16 H 0.461 0.539 17 C 0.079 3.921 18 Br 0.047 6.953 19 H 0.261 0.739 20 H -0.003 1.003 21 H -0.010 1.010 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -12.686 -5.270 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.005 3.995 10 C -0.069 4.069 11 C -0.219 4.219 12 C 0.054 3.946 13 O -0.269 6.269 14 N -0.130 5.130 15 N -0.149 5.149 16 H 0.311 0.689 17 C -0.128 4.128 18 Br 0.129 6.871 19 H 0.070 0.930 20 H 0.015 0.985 21 H 0.008 0.992 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 1.297 -13.692 -5.519 14.819 hybrid contribution -0.223 1.453 0.053 1.471 sum 1.073 -12.239 -5.467 13.448 Atomic orbital electron populations 1.70096 1.07646 1.27446 1.52047 1.25870 0.95652 1.02944 0.94974 0.85498 0.79290 0.79291 0.77582 1.18561 1.20619 1.20650 1.21691 0.93577 0.92101 1.49879 0.92087 1.18852 0.93864 0.91793 0.94982 1.19949 0.96831 0.88346 1.01816 1.20569 1.09633 1.00911 0.90820 1.19725 0.96879 0.92017 0.85961 1.84774 1.49206 1.72939 1.19931 1.77298 1.23691 1.22446 0.89528 1.45813 1.45999 1.19288 1.03783 0.68897 1.22537 1.03464 0.92829 0.93941 1.96828 1.95293 1.91303 1.03725 0.92970 0.98507 0.99189 0.91392 0.91771 0.72205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.29 21.45 0.28 -55.36 14 2 C 0.00 0.18 5.46 84.66 0.46 0.64 14 3 Si 0.96 43.66 29.54 68.60 2.03 45.68 14 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 14 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 14 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 14 7 C -0.53 -29.66 9.11 25.60 0.23 -29.43 14 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 14 9 C 0.04 2.17 4.96 29.85 0.15 2.32 14 10 C -0.03 -1.28 5.43 29.85 0.16 -1.12 14 11 C -0.20 -7.54 5.37 -20.03 -0.11 -7.65 14 12 C 0.26 9.15 8.41 85.30 0.72 9.86 14 13 O -0.46 -14.89 13.65 -93.47 -1.28 -16.16 14 14 N -0.29 -9.41 12.71 -170.50 -2.17 -11.58 14 15 N -0.43 -11.58 7.35 -53.54 -0.39 -11.97 14 16 H 0.46 8.54 8.96 -213.34 -1.91 6.63 14 17 C 0.08 2.47 7.69 83.55 0.64 3.11 14 18 Br 0.05 1.28 33.50 -20.37 -0.68 0.59 14 19 H 0.26 14.70 8.31 -92.71 -0.77 13.93 14 20 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 14 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 14 22 H 0.07 2.72 7.76 -2.39 -0.02 2.70 14 23 H 0.06 2.66 8.14 -2.39 -0.02 2.64 14 24 H 0.42 10.21 9.06 -74.06 -0.67 9.54 14 Total: -1.00 -66.19 244.04 -1.28 -67.47 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -1.33 Total: 3.59 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 2.26 Total: -22.26 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.28 Total: -78.92 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.28 Total: -16.16 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 35 Polarization: 1.28 SS G_CDS: -0.68 Total: 0.59 kcal Total: -66.19 -1.28 -67.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260892781.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.886 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds