Wall clock time and date at job start Mon Mar 30 2020 04:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48501 * 109.47547 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47026 * 300.00406 * 3 2 1 6 6 H 1.48506 * 109.47083 * 59.99953 * 3 2 1 7 7 C 1.37889 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99753 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.46780 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00059 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47433 * 180.02562 * 11 10 9 13 13 S 1.81392 * 109.47154 * 179.97438 * 12 11 10 14 14 O 1.42094 * 109.47103 * 70.94741 * 13 12 11 15 15 C 1.76203 * 102.99854 * 179.97438 * 13 12 11 16 16 C 1.33389 * 125.20133 * 89.71408 * 15 13 12 17 17 C 1.38433 * 114.92022 * 180.26718 * 16 15 13 18 18 C 1.33388 * 114.91766 * 0.02562 * 17 16 15 19 19 S 1.75879 * 109.59837 * 0.02562 * 18 17 16 20 20 H 0.96998 * 120.00062 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47176 * 60.00560 * 9 7 2 22 22 H 1.08995 * 109.47368 * 299.99513 * 9 7 2 23 23 H 1.09006 * 109.47382 * 59.99951 * 11 10 9 24 24 H 1.09008 * 109.47341 * 300.00058 * 11 10 9 25 25 H 1.08998 * 109.46592 * 59.99509 * 12 11 10 26 26 H 1.08999 * 109.46728 * 300.00510 * 12 11 10 27 27 H 1.07998 * 122.54399 * 0.25225 * 16 15 13 28 28 H 1.08000 * 122.53671 * 180.02562 * 17 16 15 29 29 H 1.08006 * 125.20143 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9563 -0.0004 13 16 1.8678 -7.5939 -0.0004 14 8 1.2698 -7.8337 -1.2669 15 6 3.2473 -8.6901 -0.0003 16 6 3.8526 -9.1642 1.0896 17 6 4.9219 -10.0080 0.8426 18 6 5.1851 -10.2187 -0.4480 19 16 4.0426 -9.3192 -1.4375 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 0.9451 -4.9823 -0.8914 24 1 0.9445 -4.9828 0.8887 25 1 3.2674 -5.8493 0.8900 26 1 3.2688 -5.8491 -0.8899 27 1 3.5330 -8.9090 2.0892 28 1 5.4992 -10.4614 1.6348 29 1 5.9784 -10.8457 -0.8273 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385318807.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:18 Heat of formation + Delta-G solvation = -55.482761 kcal Electronic energy + Delta-G solvation = -14269.225606 eV Core-core repulsion = 11604.006993 eV Total energy + Delta-G solvation = -2665.218613 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.033 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.85668 -36.83545 -35.79260 -32.86166 -30.92737 -29.86993 -27.02957 -24.46842 -22.72670 -22.21565 -19.96057 -18.68587 -17.09668 -16.44413 -16.01888 -15.59614 -15.43496 -14.59411 -14.43860 -14.04750 -13.58554 -13.25414 -13.12338 -12.96824 -12.63136 -12.00354 -11.97048 -11.14041 -11.06312 -10.89637 -10.76282 -10.72380 -10.47824 -10.06537 -9.37710 -9.13807 -8.88373 -8.71779 -8.47451 -8.22367 -6.12991 -4.14921 0.42335 1.37624 1.52578 1.86265 2.36408 2.72909 3.28138 3.34558 3.41097 3.83928 4.34531 4.71940 4.90388 5.09736 5.16836 5.22647 5.23526 5.58680 5.67499 5.78332 5.85352 6.08427 6.13558 6.22577 7.06168 7.39105 7.77123 8.11650 8.52086 8.97974 9.49867 10.98535 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.043677 B = 0.003567 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.908770 B = 7847.291150 C = 8103.283863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.192 3.808 10 O -0.392 6.392 11 C 0.083 3.917 12 C -0.452 4.452 13 S 1.373 4.627 14 O -0.846 6.846 15 C -0.553 4.553 16 C -0.042 4.042 17 C -0.156 4.156 18 C -0.198 4.198 19 S 0.158 5.842 20 H 0.264 0.736 21 H 0.007 0.993 22 H 0.009 0.991 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.848 -21.264 5.002 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.117 3.883 10 O -0.312 6.312 11 C 0.004 3.996 12 C -0.589 4.589 13 S 1.567 4.433 14 O -0.841 6.841 15 C -0.765 4.765 16 C -0.076 4.076 17 C -0.187 4.187 18 C -0.335 4.335 19 S 0.423 5.577 20 H 0.074 0.926 21 H 0.024 0.976 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.141 0.859 26 H 0.112 0.888 27 H 0.172 0.828 28 H 0.162 0.838 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.732 -21.187 3.380 22.207 hybrid contribution 1.908 0.914 -0.268 2.133 sum 7.640 -20.273 3.112 21.887 Atomic orbital electron populations 1.69970 1.06091 1.27127 1.50460 1.24967 0.95015 0.99486 0.95106 0.86264 0.79979 0.82489 0.77654 1.19507 1.20827 1.20757 1.21085 0.94102 0.89286 1.50915 0.91494 1.20276 0.88848 0.83481 0.95667 1.87897 1.35489 1.12574 1.95205 1.21686 0.92785 0.85324 0.99757 1.27915 1.08868 1.13374 1.08743 1.69332 0.82114 0.83039 1.08814 1.93113 1.65178 1.81143 1.44705 1.33062 1.22013 1.20903 1.00525 1.20025 0.93797 0.94931 0.98845 1.20411 0.99828 1.02001 0.96503 1.26056 1.04014 1.05674 0.97786 1.84678 1.22906 1.41680 1.08481 0.92642 0.97559 0.97303 0.94130 0.93219 0.85890 0.88839 0.82772 0.83842 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.52 -15.35 9.43 -34.44 -0.32 -15.68 15 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 15 9 C 0.19 5.33 5.69 36.00 0.20 5.53 15 10 O -0.39 -9.64 10.33 -35.23 -0.36 -10.00 15 11 C 0.08 1.55 5.95 37.16 0.22 1.77 15 12 C -0.45 -6.56 6.25 37.16 0.23 -6.33 15 13 S 1.37 15.73 13.78 -107.50 -1.48 14.25 15 14 O -0.85 -14.77 17.61 -35.23 -0.62 -15.39 15 15 C -0.55 -6.13 6.20 29.04 0.18 -5.95 15 16 C -0.04 -0.35 10.08 -41.20 -0.42 -0.77 15 17 C -0.16 -1.27 10.18 -41.20 -0.42 -1.69 15 18 C -0.20 -1.79 11.23 29.04 0.33 -1.46 15 19 S 0.16 1.91 23.04 -107.50 -2.48 -0.56 15 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 21 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.05 0.77 8.14 -51.92 -0.42 0.35 15 25 H 0.12 1.51 8.14 -51.92 -0.42 1.08 15 26 H 0.09 1.54 8.14 -51.92 -0.42 1.12 15 27 H 0.15 0.71 8.06 -52.49 -0.42 0.28 15 28 H 0.14 0.79 8.06 -52.49 -0.42 0.37 15 29 H 0.16 1.06 8.06 -52.48 -0.42 0.64 15 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -37.50 288.51 -8.32 -45.82 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: -3.35 Total: -6.12 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -0.09 Total: -23.05 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.98 Total: -25.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 17.64 SS G_CDS: -3.96 Total: 13.69 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -37.50 -8.32 -45.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385318807.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.663 kcal (2) G-P(sol) polarization free energy of solvation -37.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds