Wall clock time and date at job start Mon Mar 30 2020 04:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48501 * 109.47547 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47026 * 300.00406 * 3 2 1 6 6 H 1.48506 * 109.47083 * 59.99953 * 3 2 1 7 7 C 1.37889 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99753 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.46780 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00059 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47433 * 180.02562 * 11 10 9 13 13 S 1.81392 * 109.47154 * 179.97438 * 12 11 10 14 14 O 1.42094 * 109.47103 * 70.94741 * 13 12 11 15 15 C 1.76203 * 102.99854 * 179.97438 * 13 12 11 16 16 C 1.33389 * 125.20133 * 89.71408 * 15 13 12 17 17 C 1.38433 * 114.92022 * 180.26718 * 16 15 13 18 18 C 1.33388 * 114.91766 * 0.02562 * 17 16 15 19 19 S 1.75879 * 109.59837 * 0.02562 * 18 17 16 20 20 H 0.96998 * 120.00062 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47176 * 60.00560 * 9 7 2 22 22 H 1.08995 * 109.47368 * 299.99513 * 9 7 2 23 23 H 1.09006 * 109.47382 * 59.99951 * 11 10 9 24 24 H 1.09008 * 109.47341 * 300.00058 * 11 10 9 25 25 H 1.08998 * 109.46592 * 59.99509 * 12 11 10 26 26 H 1.08999 * 109.46728 * 300.00510 * 12 11 10 27 27 H 1.07998 * 122.54399 * 0.25225 * 16 15 13 28 28 H 1.08000 * 122.53671 * 180.02562 * 17 16 15 29 29 H 1.08006 * 125.20143 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9563 -0.0004 13 16 1.8678 -7.5939 -0.0004 14 8 1.2698 -7.8337 -1.2669 15 6 3.2473 -8.6901 -0.0003 16 6 3.8526 -9.1642 1.0896 17 6 4.9219 -10.0080 0.8426 18 6 5.1851 -10.2187 -0.4480 19 16 4.0426 -9.3192 -1.4375 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 0.9451 -4.9823 -0.8914 24 1 0.9445 -4.9828 0.8887 25 1 3.2674 -5.8493 0.8900 26 1 3.2688 -5.8491 -0.8899 27 1 3.5330 -8.9090 2.0892 28 1 5.4992 -10.4614 1.6348 29 1 5.9784 -10.8457 -0.8273 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385318807.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:17 Heat of formation + Delta-G solvation = -83.472628 kcal Electronic energy + Delta-G solvation = -14270.439338 eV Core-core repulsion = 11604.006993 eV Total energy + Delta-G solvation = -2666.432345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.033 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.70220 -38.55717 -37.02595 -35.03136 -32.45503 -30.62606 -29.16855 -25.24966 -24.64053 -23.86682 -20.71613 -19.49722 -18.66290 -18.21255 -17.41985 -17.01009 -16.69451 -16.35427 -15.77955 -15.23680 -14.97106 -14.83086 -14.01384 -13.95133 -13.84398 -13.48738 -13.12836 -12.94555 -12.82283 -12.52047 -12.39677 -12.04925 -11.87740 -11.58769 -11.29302 -10.91587 -10.30488 -10.18776 -9.58557 -9.53484 -8.34563 -6.47530 -0.36381 0.55649 0.63550 1.06886 1.39179 1.40881 1.55525 1.59731 1.87541 2.33661 2.81526 2.98925 3.28168 3.90097 4.04283 4.13227 4.35823 4.49313 4.62996 4.69559 4.76479 5.00684 5.03022 5.13637 5.16598 5.51896 5.52144 5.92033 6.47508 6.76682 7.24184 8.77892 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.043677 B = 0.003567 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.908770 B = 7847.291150 C = 8103.283863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.203 3.797 10 O -0.409 6.409 11 C 0.067 3.933 12 C -0.455 4.455 13 S 1.456 4.544 14 O -0.909 6.909 15 C -0.581 4.581 16 C -0.014 4.014 17 C -0.157 4.157 18 C -0.179 4.179 19 S 0.058 5.942 20 H 0.272 0.728 21 H -0.019 1.019 22 H 0.002 0.998 23 H 0.023 0.977 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.066 0.934 27 H 0.202 0.798 28 H 0.183 0.817 29 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 -21.890 7.441 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.589 4.589 8 H 0.079 0.921 9 C 0.128 3.872 10 O -0.330 6.330 11 C -0.011 4.011 12 C -0.590 4.590 13 S 1.651 4.349 14 O -0.905 6.905 15 C -0.794 4.794 16 C -0.048 4.048 17 C -0.188 4.188 18 C -0.316 4.316 19 S 0.322 5.678 20 H 0.081 0.919 21 H -0.002 1.002 22 H 0.020 0.980 23 H 0.041 0.959 24 H 0.103 0.897 25 H 0.169 0.831 26 H 0.085 0.915 27 H 0.219 0.781 28 H 0.200 0.800 29 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.298 -21.806 5.822 23.721 hybrid contribution 1.491 0.893 -0.942 1.977 sum 8.790 -20.913 4.880 23.204 Atomic orbital electron populations 1.70069 1.07715 1.28721 1.50241 1.26000 0.96046 1.03465 0.93821 0.85097 0.78533 0.77122 0.78390 1.18949 1.19883 1.19122 1.21409 0.94088 0.90837 1.52583 0.92100 1.19938 0.88749 0.84541 0.93991 1.87843 1.35652 1.14202 1.95281 1.22088 0.94630 0.83719 1.00626 1.28061 1.07877 1.14246 1.08768 1.68535 0.80507 0.80189 1.05669 1.92986 1.68080 1.81871 1.47599 1.32731 1.23331 1.22769 1.00563 1.20706 0.91967 0.92149 0.99970 1.20928 0.99633 1.01321 0.96918 1.26377 1.03143 1.04694 0.97434 1.85064 1.26257 1.44737 1.11748 0.91912 1.00166 0.98028 0.95900 0.89670 0.83117 0.91513 0.78090 0.80007 0.79316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.84 15 2 C 0.01 0.31 5.46 84.66 0.46 0.78 15 3 Si 0.99 44.70 29.54 68.60 2.03 46.72 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 7 C -0.55 -33.48 9.43 25.60 0.24 -33.24 15 8 H 0.06 3.67 7.81 -2.91 -0.02 3.64 15 9 C 0.20 11.67 5.69 71.23 0.41 12.08 15 10 O -0.41 -20.71 10.33 -148.98 -1.54 -22.25 15 11 C 0.07 2.55 5.95 71.98 0.43 2.97 15 12 C -0.45 -13.13 6.25 71.98 0.45 -12.68 15 13 S 1.46 32.47 13.78 -56.49 -0.78 31.70 15 14 O -0.91 -32.90 17.61 -148.98 -2.62 -35.52 15 15 C -0.58 -11.97 6.20 66.72 0.41 -11.56 15 16 C -0.01 -0.18 10.08 21.22 0.21 0.04 15 17 C -0.16 -1.86 10.18 21.22 0.22 -1.64 15 18 C -0.18 -2.78 11.23 66.72 0.75 -2.03 15 19 S 0.06 1.43 23.04 -56.49 -1.30 0.13 15 20 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 21 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 15 22 H 0.00 0.11 8.14 -2.39 -0.02 0.09 15 23 H 0.02 0.93 8.14 -2.38 -0.02 0.91 15 24 H 0.09 2.60 8.14 -2.38 -0.02 2.58 15 25 H 0.15 3.40 8.14 -2.39 -0.02 3.38 15 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.20 0.58 8.06 -2.91 -0.02 0.56 15 28 H 0.18 0.87 8.06 -2.91 -0.02 0.84 15 29 H 0.19 1.87 8.06 -2.91 -0.02 1.85 15 Total: -1.00 -84.78 288.51 0.79 -83.99 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: 1.14 Total: -3.63 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 3.58 Total: -45.29 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.28 Total: -55.84 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -4.16 Total: -57.77 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 33.90 SS G_CDS: -2.08 Total: 31.82 kcal Total: -84.78 0.79 -83.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385318807.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.513 kcal (2) G-P(sol) polarization free energy of solvation -84.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds