Wall clock time and date at job start Mon Mar 30 2020 04:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29512 * 1 3 3 Si 1.86797 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47306 * 85.00920 * 3 2 1 5 5 H 1.48502 * 109.47073 * 205.00888 * 3 2 1 6 6 H 1.48497 * 109.47135 * 325.00605 * 3 2 1 7 7 C 1.46529 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99828 * 195.93249 * 7 2 1 9 9 C 1.40353 * 120.00495 * 15.92659 * 7 2 1 10 10 C 1.41544 * 121.14108 * 22.26650 * 9 7 2 11 11 C 1.36461 * 119.02358 * 179.75081 * 10 9 7 12 12 N 1.48017 * 119.24467 * 180.25163 * 11 10 9 13 13 O 1.31695 * 119.99869 * 180.28591 * 12 11 10 14 14 O 1.31696 * 119.99651 * 0.28609 * 12 11 10 15 15 N 1.32120 * 121.50802 * 0.54614 * 11 10 9 16 16 C 1.31364 * 122.60419 * 359.72628 * 15 11 10 17 17 C 1.50708 * 119.62940 * 180.02562 * 16 15 11 18 18 F 1.39900 * 109.47143 * 119.97926 * 17 16 15 19 19 F 1.39908 * 109.46880 * 239.98005 * 17 16 15 20 20 C 1.39368 * 120.74021 * 359.97438 * 16 15 11 21 21 O 1.35214 * 120.79526 * 180.02562 * 20 16 15 22 22 H 0.97002 * 119.99876 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.48660 * 359.97438 * 10 9 7 24 24 H 1.08997 * 109.46995 * 359.97438 * 17 16 15 25 25 H 0.96705 * 114.00069 * 270.01930 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 2.3711 2.1073 1.3947 5 1 3.5754 1.4120 -0.5919 6 1 1.4833 2.6199 -0.8029 7 6 2.0277 -1.2690 -0.0006 8 1 3.0767 -1.2871 0.2562 9 6 1.3664 -2.4611 -0.3346 10 6 0.1783 -2.4482 -1.1038 11 6 -0.4263 -3.6332 -1.4080 12 7 -1.6659 -3.6258 -2.2168 13 8 -2.2648 -4.7604 -2.5143 14 8 -2.1698 -2.4847 -2.6390 15 7 0.0663 -4.7864 -0.9922 16 6 1.1611 -4.8697 -0.2710 17 6 1.6639 -6.2212 0.1670 18 9 2.9492 -6.4290 -0.3448 19 9 1.7043 -6.2733 1.5645 20 6 1.8635 -3.7222 0.0927 21 8 2.9908 -3.8066 0.8346 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2415 -1.5146 -1.4480 24 1 0.9945 -6.9963 -0.2062 25 1 2.8374 -3.7709 1.7887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390183566.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:19 Heat of formation + Delta-G solvation = -97.796050 kcal Electronic energy + Delta-G solvation = -19303.358095 eV Core-core repulsion = 15536.171039 eV Total energy + Delta-G solvation = -3767.187056 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.044 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.57539 -46.57418 -39.74603 -37.89634 -36.24870 -34.92085 -33.63624 -31.81447 -30.64412 -27.05070 -26.28064 -25.16664 -21.77705 -21.55641 -18.82269 -17.90701 -17.57390 -17.29890 -16.84353 -16.62439 -16.03285 -15.72511 -15.33273 -14.99967 -14.57632 -13.48877 -13.43504 -12.96546 -12.94154 -12.64353 -12.26394 -12.20767 -11.80452 -11.29339 -11.13448 -10.92147 -10.71822 -10.62425 -10.27980 -10.06892 -9.97446 -9.05124 -8.83340 -8.56628 -7.69853 -5.31945 0.16183 1.76253 1.82124 2.06242 2.62056 2.68524 2.73182 3.31480 3.68855 3.92652 4.46138 4.52975 4.94368 5.13646 5.47899 5.57969 5.66342 5.99120 6.17204 6.30005 6.41266 6.79698 7.01426 7.43042 7.47181 7.71040 7.77553 8.33792 8.53324 9.13823 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.009466 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.483475 B = 2957.091818 C = 4488.208615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.062 3.938 3 Si 0.936 3.064 4 H -0.259 1.259 5 H -0.248 1.248 6 H -0.264 1.264 7 C -0.384 4.384 8 H 0.112 0.888 9 C 0.080 3.920 10 C -0.108 4.108 11 C 0.207 3.793 12 N -0.004 5.004 13 O -0.170 6.170 14 O -0.193 6.193 15 N -0.533 5.533 16 C 0.079 3.921 17 C 0.335 3.665 18 F -0.193 7.193 19 F -0.200 7.200 20 C -0.020 4.020 21 O -0.472 6.472 22 H 0.308 0.692 23 H 0.162 0.838 24 H 0.122 0.878 25 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 0.252 2.965 4.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.183 1.183 5 H -0.171 1.171 6 H -0.189 1.189 7 C -0.411 4.411 8 H 0.130 0.870 9 C 0.072 3.928 10 C -0.135 4.135 11 C -0.003 4.003 12 N 0.473 4.527 13 O -0.369 6.369 14 O -0.380 6.380 15 N -0.254 5.254 16 C -0.062 4.062 17 C 0.280 3.720 18 F -0.174 7.174 19 F -0.182 7.182 20 C -0.072 4.072 21 O -0.279 6.279 22 H 0.121 0.879 23 H 0.180 0.820 24 H 0.140 0.860 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.813 -0.376 2.527 4.589 hybrid contribution -0.043 1.379 0.512 1.472 sum 3.770 1.004 3.039 4.945 Atomic orbital electron populations 1.69002 1.09182 1.32979 1.23282 1.27872 0.94906 1.03324 0.90867 0.85795 0.80926 0.77380 0.80210 1.18325 1.17122 1.18851 1.21107 0.98038 0.88499 1.33505 0.86999 1.17875 0.90447 0.92823 0.91631 1.21980 0.97332 0.97017 0.97193 1.19599 0.87631 0.91695 1.01364 1.50563 1.01989 1.02005 0.98133 1.96185 1.62614 1.16284 1.61806 1.96218 1.68913 1.15138 1.57749 1.65031 1.14579 1.27196 1.18563 1.20978 0.91928 0.94007 0.99238 1.19911 0.81511 0.95832 0.74713 1.92998 1.42038 1.95734 1.86648 1.92957 1.96764 1.97404 1.31032 1.19166 0.92773 0.91642 1.03588 1.84658 1.27479 1.95326 1.20447 0.87869 0.82046 0.86021 0.77564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -14.97 10.92 55.98 0.61 -14.36 15 2 C 0.06 1.22 5.39 -15.19 -0.08 1.14 15 3 Si 0.94 14.49 29.67 -169.99 -5.04 9.45 15 4 H -0.26 -3.93 7.11 56.52 0.40 -3.53 15 5 H -0.25 -3.87 7.11 56.52 0.40 -3.47 15 6 H -0.26 -4.03 7.11 56.52 0.40 -3.63 15 7 C -0.38 -8.22 9.09 -35.45 -0.32 -8.54 15 8 H 0.11 2.28 7.77 -52.48 -0.41 1.88 15 9 C 0.08 1.85 5.67 -106.35 -0.60 1.25 15 10 C -0.11 -2.57 8.33 -38.96 -0.32 -2.90 15 11 C 0.21 5.04 7.76 -146.62 -1.14 3.90 15 12 N 0.00 -0.10 4.98 32.60 0.16 0.06 15 13 O -0.17 -4.13 19.74 -31.57 -0.62 -4.75 15 14 O -0.19 -4.65 19.07 -31.57 -0.60 -5.25 15 15 N -0.53 -12.52 9.87 -6.72 -0.07 -12.59 15 16 C 0.08 1.71 6.31 -82.37 -0.52 1.19 15 17 C 0.34 6.04 5.23 36.01 0.19 6.23 15 18 F -0.19 -3.60 16.98 2.25 0.04 -3.56 15 19 F -0.20 -3.49 16.99 2.25 0.04 -3.45 15 20 C -0.02 -0.44 6.68 -37.67 -0.25 -0.69 15 21 O -0.47 -9.23 11.88 -17.34 -0.21 -9.44 15 22 H 0.31 5.58 8.27 -40.82 -0.34 5.24 15 23 H 0.16 3.88 5.54 -52.49 -0.29 3.59 15 24 H 0.12 1.89 8.10 -51.93 -0.42 1.47 15 25 H 0.37 5.82 9.06 45.56 0.41 6.23 15 LS Contribution 254.60 15.07 3.84 3.84 Total: -1.00 -25.96 254.60 -4.74 -30.70 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.16 Total: 7.78 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.05 Total: 1.57 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.71 Total: -26.89 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -1.43 Total: -19.44 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 0.08 Total: -7.01 kcal Atomic # 14 Polarization: 14.49 SS G_CDS: -5.04 Total: 9.45 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -25.96 -4.74 -30.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390183566.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.095 kcal (2) G-P(sol) polarization free energy of solvation -25.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds