Wall clock time and date at job start Mon Mar 30 2020 04:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 119.99798 * 2 1 4 4 H 1.48498 * 109.47298 * 240.00099 * 3 2 1 5 5 H 1.48496 * 109.47478 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47042 * 119.99974 * 3 2 1 7 7 C 1.40053 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99592 * 180.02562 * 7 2 1 9 9 C 1.46369 * 119.99657 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00221 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99592 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99977 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47121 * 180.02562 * 12 11 9 14 14 C 1.50705 * 109.46802 * 179.97438 * 13 12 11 15 15 N 1.29740 * 126.29138 * 269.99340 * 14 13 12 16 16 O 1.41361 * 109.74059 * 180.02562 * 15 14 13 17 17 C 1.34820 * 109.32695 * 0.02562 * 16 15 14 18 18 C 1.38983 * 133.44621 * 179.97438 * 17 16 15 19 19 C 1.37794 * 119.79420 * 180.02562 * 18 17 16 20 20 C 1.38785 * 120.59884 * 0.02562 * 19 18 17 21 21 C 1.36622 * 120.51766 * 359.97438 * 20 19 18 22 22 C 1.39679 * 119.79071 * 0.02562 * 21 20 19 23 23 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00175 * 0.02562 * 11 9 7 25 25 H 1.08994 * 109.47338 * 59.99745 * 12 11 9 26 26 H 1.09007 * 109.47105 * 300.00013 * 12 11 9 27 27 H 1.09002 * 109.47222 * 60.00286 * 13 12 11 28 28 H 1.08996 * 109.46937 * 299.99459 * 13 12 11 29 29 H 1.08003 * 120.10178 * 359.97438 * 18 17 16 30 30 H 1.08005 * 119.70221 * 179.97438 * 19 18 17 31 31 H 1.08001 * 119.74182 * 179.72896 * 20 19 18 32 32 H 1.08005 * 120.10555 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4804 -0.0005 10 8 0.0582 -2.4804 -0.0005 11 7 1.9491 -3.6476 -0.0016 12 6 1.2166 -4.9164 -0.0022 13 6 2.2109 -6.0793 -0.0027 14 6 1.4573 -7.3844 -0.0026 15 7 1.0738 -8.0496 1.0431 16 8 0.3966 -9.2233 0.6405 17 6 0.3642 -9.2801 -0.7061 18 6 -0.1622 -10.1934 -1.6118 19 6 -0.0317 -9.9686 -2.9650 20 6 0.6218 -8.8374 -3.4334 21 6 1.1462 -7.9274 -2.5597 22 6 1.0248 -8.1365 -1.1840 23 1 -0.4851 0.8401 0.0004 24 1 2.9190 -3.6476 -0.0020 25 1 0.5896 -4.9736 -0.8918 26 1 0.5903 -4.9747 0.8881 27 1 2.8375 -6.0219 0.8874 28 1 2.8374 -6.0211 -0.8927 29 1 -0.6712 -11.0771 -1.2561 30 1 -0.4409 -10.6796 -3.6676 31 1 0.7200 -8.6772 -4.4970 32 1 1.6538 -7.0496 -2.9315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597875001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:13 Heat of formation + Delta-G solvation = 17.247462 kcal Electronic energy + Delta-G solvation = -17998.754257 eV Core-core repulsion = 14926.618486 eV Total energy + Delta-G solvation = -3072.135770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.84992 -37.88442 -37.48132 -35.33358 -33.20361 -32.31657 -30.79364 -30.21668 -29.48605 -26.31942 -23.63170 -23.04854 -22.83074 -20.28512 -19.72121 -17.68033 -17.44164 -16.92930 -16.03342 -15.68394 -15.33809 -14.79803 -14.65586 -14.23948 -14.02069 -13.79891 -13.01198 -12.55556 -12.47037 -12.41684 -12.37660 -11.92870 -11.52883 -11.33844 -11.17960 -11.07672 -10.75165 -10.71533 -10.47275 -10.26494 -9.12687 -8.86657 -8.78236 -7.66811 -7.59746 -6.20866 -4.67097 0.47290 1.09143 1.93524 2.44306 3.14848 3.19815 3.21653 3.40805 3.86800 4.10934 4.14542 4.40338 4.56495 4.69551 4.81222 4.95593 5.12832 5.16307 5.22595 5.30904 5.48648 5.64228 5.74294 5.77986 5.93045 6.04065 6.13960 6.35275 6.41850 6.45791 7.17313 7.41052 7.86657 8.00484 8.28128 8.99803 9.47430 10.57096 10.75018 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.003708 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.836139 B = 7550.346808 C = 7816.276127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.579 6.579 11 N -0.767 5.767 12 C 0.141 3.859 13 C -0.064 4.064 14 C 0.147 3.853 15 N -0.284 5.284 16 O -0.097 6.097 17 C 0.083 3.917 18 C -0.130 4.130 19 C -0.062 4.062 20 C -0.153 4.153 21 C -0.033 4.033 22 C -0.192 4.192 23 H 0.269 0.731 24 H 0.382 0.618 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -17.076 -6.741 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.462 6.462 11 N -0.424 5.424 12 C 0.015 3.985 13 C -0.102 4.102 14 C -0.034 4.034 15 N -0.028 5.028 16 O -0.106 6.106 17 C 0.029 3.971 18 C -0.150 4.150 19 C -0.082 4.082 20 C -0.171 4.171 21 C -0.053 4.053 22 C -0.195 4.195 23 H 0.080 0.920 24 H 0.213 0.787 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.180 -17.135 -5.364 18.234 hybrid contribution 0.891 0.756 -0.718 1.371 sum 4.070 -16.379 -6.082 17.940 Atomic orbital electron populations 1.70011 1.07090 1.27455 1.35058 1.25717 0.94629 1.00330 0.92614 0.86412 0.79791 0.80964 0.79444 1.19262 1.20560 1.19267 1.20832 0.93573 0.89265 1.54558 0.91353 1.18240 0.87233 0.82304 0.76400 1.90613 1.14108 1.86719 1.54743 1.46124 1.08578 1.04486 1.83184 1.20717 0.93268 0.82910 1.01637 1.20557 0.97662 0.86878 1.05150 1.24525 0.93443 0.95986 0.89481 1.79939 1.11045 0.93740 1.18076 1.89153 1.66782 1.37496 1.17217 1.20336 0.96071 0.95594 0.85120 1.20036 1.04243 0.99599 0.91085 1.21139 0.95916 0.96975 0.94134 1.20820 1.00942 0.95072 1.00281 1.20554 0.95907 0.98712 0.90105 1.20761 1.07165 0.96281 0.95312 0.91989 0.78682 0.92765 0.92757 0.88559 0.88359 0.84493 0.84392 0.84760 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.02 11.83 55.55 0.66 -22.36 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 19.92 29.56 -169.99 -5.02 14.89 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.55 -15.21 9.54 -35.63 -0.34 -15.55 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.55 15.66 7.75 -12.99 -0.10 15.56 16 10 O -0.58 -18.88 15.02 5.20 0.08 -18.80 16 11 N -0.77 -16.57 5.55 -61.72 -0.34 -16.92 16 12 C 0.14 2.67 5.66 -4.04 -0.02 2.64 16 13 C -0.06 -0.87 5.93 -27.88 -0.17 -1.04 16 14 C 0.15 2.19 6.72 -80.12 -0.54 1.65 16 15 N -0.28 -4.74 12.81 34.91 0.45 -4.29 16 16 O -0.10 -1.56 12.06 7.68 0.09 -1.46 16 17 C 0.08 1.13 7.48 -38.47 -0.29 0.85 16 18 C -0.13 -1.32 10.07 -39.47 -0.40 -1.72 16 19 C -0.06 -0.51 10.02 -39.54 -0.40 -0.91 16 20 C -0.15 -1.35 9.97 -39.96 -0.40 -1.75 16 21 C -0.03 -0.36 10.05 -39.63 -0.40 -0.76 16 22 C -0.19 -2.60 6.32 -105.17 -0.67 -3.27 16 23 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 24 H 0.38 6.94 8.45 -40.82 -0.35 6.59 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -36.02 292.55 -6.76 -42.79 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.27 Total: 3.73 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.81 Total: -1.98 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.76 Total: -43.57 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.27 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -36.02 -6.76 -42.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597875001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.034 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds