Wall clock time and date at job start Mon Mar 30 2020 04:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 119.99798 * 2 1 4 4 H 1.48498 * 109.47298 * 240.00099 * 3 2 1 5 5 H 1.48496 * 109.47478 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47042 * 119.99974 * 3 2 1 7 7 C 1.40053 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99592 * 180.02562 * 7 2 1 9 9 C 1.46369 * 119.99657 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00221 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99592 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99977 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47121 * 180.02562 * 12 11 9 14 14 C 1.50705 * 109.46802 * 179.97438 * 13 12 11 15 15 N 1.29740 * 126.29138 * 269.99340 * 14 13 12 16 16 O 1.41361 * 109.74059 * 180.02562 * 15 14 13 17 17 C 1.34820 * 109.32695 * 0.02562 * 16 15 14 18 18 C 1.38983 * 133.44621 * 179.97438 * 17 16 15 19 19 C 1.37794 * 119.79420 * 180.02562 * 18 17 16 20 20 C 1.38785 * 120.59884 * 0.02562 * 19 18 17 21 21 C 1.36622 * 120.51766 * 359.97438 * 20 19 18 22 22 C 1.39679 * 119.79071 * 0.02562 * 21 20 19 23 23 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00175 * 0.02562 * 11 9 7 25 25 H 1.08994 * 109.47338 * 59.99745 * 12 11 9 26 26 H 1.09007 * 109.47105 * 300.00013 * 12 11 9 27 27 H 1.09002 * 109.47222 * 60.00286 * 13 12 11 28 28 H 1.08996 * 109.46937 * 299.99459 * 13 12 11 29 29 H 1.08003 * 120.10178 * 359.97438 * 18 17 16 30 30 H 1.08005 * 119.70221 * 179.97438 * 19 18 17 31 31 H 1.08001 * 119.74182 * 179.72896 * 20 19 18 32 32 H 1.08005 * 120.10555 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4804 -0.0005 10 8 0.0582 -2.4804 -0.0005 11 7 1.9491 -3.6476 -0.0016 12 6 1.2166 -4.9164 -0.0022 13 6 2.2109 -6.0793 -0.0027 14 6 1.4573 -7.3844 -0.0026 15 7 1.0738 -8.0496 1.0431 16 8 0.3966 -9.2233 0.6405 17 6 0.3642 -9.2801 -0.7061 18 6 -0.1622 -10.1934 -1.6118 19 6 -0.0317 -9.9686 -2.9650 20 6 0.6218 -8.8374 -3.4334 21 6 1.1462 -7.9274 -2.5597 22 6 1.0248 -8.1365 -1.1840 23 1 -0.4851 0.8401 0.0004 24 1 2.9190 -3.6476 -0.0020 25 1 0.5896 -4.9736 -0.8918 26 1 0.5903 -4.9747 0.8881 27 1 2.8375 -6.0219 0.8874 28 1 2.8374 -6.0211 -0.8927 29 1 -0.6712 -11.0771 -1.2561 30 1 -0.4409 -10.6796 -3.6676 31 1 0.7200 -8.6772 -4.4970 32 1 1.6538 -7.0496 -2.9315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597875001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:13 Heat of formation + Delta-G solvation = -9.024424 kcal Electronic energy + Delta-G solvation = -17999.893491 eV Core-core repulsion = 14926.618486 eV Total energy + Delta-G solvation = -3073.275005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.85560 -39.49682 -38.71487 -36.78297 -34.90438 -34.35779 -31.69474 -31.17675 -30.91511 -28.32636 -24.98513 -24.12800 -23.71559 -21.81034 -21.34142 -19.24648 -18.57036 -18.10965 -17.40335 -17.16591 -16.50431 -16.30103 -16.11229 -15.91328 -15.08028 -14.81916 -14.48547 -14.20818 -14.13852 -13.41795 -13.30020 -13.15943 -13.07690 -12.89008 -12.66043 -12.61804 -12.20250 -12.07699 -12.03234 -11.91523 -10.91225 -10.00454 -9.91929 -9.64047 -9.56588 -8.29232 -6.86148 -0.43614 0.25521 0.91103 1.41004 1.43032 1.45850 1.57870 2.25573 2.46749 2.59772 2.77069 3.15731 3.31063 3.53825 3.60610 3.87187 4.04643 4.06966 4.15833 4.25763 4.36850 4.46019 4.69439 4.80724 4.90857 4.95501 5.10393 5.28458 5.32691 5.39300 5.68968 5.86100 6.14094 6.15634 6.25230 6.86681 7.53247 8.47600 8.66760 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.003708 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.836139 B = 7550.346808 C = 7816.276127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.251 1.251 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.750 5.750 12 C 0.149 3.851 13 C -0.046 4.046 14 C 0.143 3.857 15 N -0.323 5.323 16 O -0.118 6.118 17 C 0.051 3.949 18 C -0.137 4.137 19 C -0.047 4.047 20 C -0.145 4.145 21 C -0.046 4.046 22 C -0.215 4.215 23 H 0.274 0.726 24 H 0.402 0.598 25 H 0.041 0.959 26 H 0.022 0.978 27 H 0.108 0.892 28 H 0.133 0.867 29 H 0.158 0.842 30 H 0.181 0.819 31 H 0.169 0.831 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 -17.368 -8.893 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.175 1.175 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.607 4.607 8 H 0.112 0.888 9 C 0.340 3.660 10 O -0.523 6.523 11 N -0.406 5.406 12 C 0.022 3.978 13 C -0.085 4.085 14 C -0.037 4.037 15 N -0.067 5.067 16 O -0.128 6.128 17 C -0.002 4.002 18 C -0.156 4.156 19 C -0.066 4.066 20 C -0.163 4.163 21 C -0.066 4.066 22 C -0.219 4.219 23 H 0.084 0.916 24 H 0.237 0.763 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.127 0.873 28 H 0.151 0.849 29 H 0.176 0.824 30 H 0.198 0.802 31 H 0.186 0.814 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.079 -17.479 -7.523 19.695 hybrid contribution 0.265 0.704 -0.158 0.769 sum 5.344 -16.775 -7.681 19.209 Atomic orbital electron populations 1.70196 1.09685 1.29065 1.36375 1.27032 0.95507 1.05146 0.91156 0.85028 0.78118 0.74476 0.80401 1.17459 1.20203 1.17865 1.21419 0.94967 0.89733 1.54605 0.88815 1.18684 0.86833 0.84376 0.76102 1.90568 1.16486 1.87939 1.57258 1.45687 1.09542 1.03962 1.81412 1.20623 0.94064 0.83605 0.99478 1.20424 0.96360 0.84173 1.07501 1.24701 0.92926 0.96023 0.90083 1.79844 1.12523 0.94797 1.19569 1.89068 1.67309 1.37400 1.18980 1.20913 0.97717 0.97077 0.84471 1.20509 1.03912 0.99655 0.91513 1.21698 0.93990 0.97132 0.93774 1.21320 0.99072 0.94198 1.01679 1.20872 0.96593 0.99982 0.89163 1.20935 1.08346 0.96424 0.96156 0.91573 0.76342 0.94091 0.95937 0.87322 0.84896 0.82449 0.80156 0.81376 0.83203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.65 11.83 21.84 0.26 -50.39 16 2 C 0.03 1.47 5.50 85.31 0.47 1.94 16 3 Si 1.00 40.28 29.56 68.60 2.03 42.31 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.57 -31.81 9.54 24.83 0.24 -31.57 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.54 30.98 7.75 86.36 0.67 31.65 16 10 O -0.64 -43.25 15.02 -4.31 -0.06 -43.32 16 11 N -0.75 -32.61 5.55 -467.41 -2.59 -35.20 16 12 C 0.15 5.77 5.66 86.38 0.49 6.26 16 13 C -0.05 -1.25 5.93 29.85 0.18 -1.07 16 14 C 0.14 4.36 6.72 45.04 0.30 4.67 16 15 N -0.32 -11.31 12.81 -43.47 -0.56 -11.87 16 16 O -0.12 -3.96 12.06 29.86 0.36 -3.60 16 17 C 0.05 1.42 7.48 22.99 0.17 1.59 16 18 C -0.14 -2.54 10.07 22.34 0.23 -2.31 16 19 C -0.05 -0.60 10.02 22.30 0.22 -0.38 16 20 C -0.14 -2.05 9.97 22.02 0.22 -1.83 16 21 C -0.05 -0.93 10.05 22.24 0.22 -0.71 16 22 C -0.21 -5.81 6.32 -20.22 -0.13 -5.94 16 23 H 0.27 15.31 8.29 -92.70 -0.77 14.55 16 24 H 0.40 14.12 8.45 -92.71 -0.78 13.34 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -83.63 292.55 3.08 -80.55 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.37 Total: 19.22 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 3.28 Total: 2.30 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -2.89 Total: -97.46 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: 0.30 Total: -46.92 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -83.63 3.08 -80.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597875001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.523 kcal (2) G-P(sol) polarization free energy of solvation -83.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds