Wall clock time and date at job start Mon Mar 30 2020 04:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40087 * 126.03680 * 2 1 4 4 C 1.30838 * 108.22531 * 179.97438 * 3 2 1 5 5 C 1.39856 * 108.22085 * 359.74514 * 4 3 2 6 6 C 1.50705 * 126.05013 * 180.30714 * 5 4 3 7 7 H 1.09001 * 109.47107 * 145.13271 * 6 5 4 8 8 O 1.42898 * 109.47177 * 25.13256 * 6 5 4 9 9 C 1.50695 * 109.47157 * 265.13110 * 6 5 4 10 10 H 1.08003 * 119.99856 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00190 * 180.02562 * 9 6 5 12 12 N 1.31512 * 120.00159 * 359.97438 * 11 9 6 13 13 Si 1.86807 * 119.99881 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.47409 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47045 * 120.00007 * 13 11 9 16 16 H 1.48501 * 109.46695 * 239.99712 * 13 11 9 17 17 C 1.34985 * 126.03722 * 179.97438 * 2 1 3 18 18 Br 1.89100 * 126.13598 * 0.04283 * 17 2 1 19 19 H 1.08995 * 109.47676 * 270.05213 * 1 2 3 20 20 H 1.09008 * 109.46950 * 30.05068 * 1 2 3 21 21 H 1.09005 * 109.47204 * 150.04263 * 1 2 3 22 22 H 1.08000 * 125.88982 * 179.97438 * 4 3 2 23 23 H 0.96702 * 113.99731 * 300.00179 * 8 6 5 24 24 H 0.97000 * 120.00557 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7326 0.0006 5 6 3.5447 -0.6659 0.0068 6 6 4.7695 -1.5440 0.0161 7 1 4.5709 -2.4384 0.6067 8 8 5.8648 -0.8278 0.5899 9 6 5.1136 -1.9411 -1.3963 10 1 4.5065 -1.5920 -2.2185 11 6 6.2035 -2.7498 -1.6390 12 7 6.9432 -3.1744 -0.6379 13 14 6.6305 -3.2413 -3.3899 14 1 5.6501 -2.6365 -4.3269 15 1 7.9952 -2.7583 -3.7208 16 1 6.5853 -4.7205 -3.5137 17 6 2.2591 -1.0915 0.0005 18 35 1.6802 -2.8917 0.0002 19 1 -0.3634 0.0009 1.0276 20 1 -0.3633 0.8896 -0.5147 21 1 -0.3634 -0.8904 -0.5132 22 1 4.4052 1.3719 0.0003 23 1 6.0976 -0.0184 0.1147 24 1 7.7098 -3.7437 -0.8085 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606289023.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:01 Heat of formation + Delta-G solvation = 9.026933 kcal Electronic energy + Delta-G solvation = -12397.191480 eV Core-core repulsion = 9972.005610 eV Total energy + Delta-G solvation = -2425.185869 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.990 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.18868 -37.56927 -34.30942 -34.09138 -33.05241 -30.68774 -28.61620 -27.31834 -24.47121 -21.81766 -21.10697 -19.02048 -17.99693 -16.62228 -16.53915 -16.13271 -15.36148 -15.11011 -14.73542 -13.79400 -13.73516 -13.46514 -13.23406 -12.84708 -12.79316 -12.22519 -12.17681 -12.01497 -11.33000 -11.15063 -10.69259 -10.32499 -10.19343 -9.23653 -8.04378 -6.29026 0.18432 0.61744 1.42526 1.44793 1.55695 1.72329 1.76539 2.46435 3.19231 3.56312 4.22296 4.33596 4.35781 4.53190 4.55086 4.60308 4.90852 5.54340 5.69111 5.75606 5.86251 6.14515 6.53921 6.79184 7.40647 7.59869 8.98352 Molecular weight = 259.99amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.009868 C = 0.008329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.457884 B = 2836.722816 C = 3360.740306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.364 5.364 3 N -0.291 5.291 4 C 0.049 3.951 5 C -0.206 4.206 6 C 0.298 3.702 7 H 0.038 0.962 8 O -0.574 6.574 9 C -0.555 4.555 10 H 0.048 0.952 11 C 0.033 3.967 12 N -0.896 5.896 13 Si 0.950 3.050 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.279 1.279 17 C 0.052 3.948 18 Br 0.030 6.970 19 H 0.094 0.906 20 H 0.108 0.892 21 H 0.099 0.901 22 H 0.207 0.793 23 H 0.359 0.641 24 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.272 2.950 0.476 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.151 5.151 3 N -0.115 5.115 4 C -0.136 4.136 5 C -0.220 4.220 6 C 0.240 3.760 7 H 0.055 0.945 8 O -0.378 6.378 9 C -0.593 4.593 10 H 0.066 0.934 11 C -0.169 4.169 12 N -0.534 5.534 13 Si 0.776 3.224 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.153 4.153 18 Br 0.112 6.888 19 H 0.112 0.888 20 H 0.127 0.873 21 H 0.117 0.883 22 H 0.223 0.777 23 H 0.205 0.795 24 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.332 2.700 0.967 14.616 hybrid contribution 1.028 -0.336 -1.189 1.607 sum -13.304 2.364 -0.222 13.514 Atomic orbital electron populations 1.22275 0.71725 1.06056 1.05144 1.48788 1.07716 1.01416 1.57140 1.77219 1.01906 1.07505 1.24880 1.23905 0.95758 0.94006 0.99893 1.21409 0.95340 0.95829 1.09439 1.17554 0.78619 0.87322 0.92538 0.94455 1.86529 1.53877 1.40689 1.56677 1.21685 1.12620 1.31983 0.93002 0.93400 1.25734 0.95899 0.94984 1.00299 1.70190 1.17072 1.33800 1.32305 0.85650 0.78095 0.77999 0.80698 1.19340 1.20408 1.20522 1.22558 0.92903 0.88387 1.11474 1.96665 1.88970 1.05433 1.97776 0.88781 0.87327 0.88279 0.77686 0.79513 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.87 11.28 127.77 1.44 3.31 14 2 N -0.36 -12.12 4.01 -363.85 -1.46 -13.58 14 3 N -0.29 -10.50 12.57 -57.03 -0.72 -11.22 14 4 C 0.05 1.86 11.32 85.23 0.97 2.83 14 5 C -0.21 -8.96 5.16 -20.12 -0.10 -9.06 14 6 C 0.30 15.23 3.04 29.10 0.09 15.32 14 7 H 0.04 2.14 7.94 -2.39 -0.02 2.12 14 8 O -0.57 -29.30 12.53 -148.98 -1.87 -31.17 14 9 C -0.55 -30.02 8.74 25.60 0.22 -29.79 14 10 H 0.05 2.61 7.74 -2.91 -0.02 2.59 14 11 C 0.03 1.83 5.40 84.65 0.46 2.29 14 12 N -0.90 -52.41 12.84 21.44 0.28 -52.14 14 13 Si 0.95 43.15 29.54 68.60 2.03 45.18 14 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 14 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 14 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 14 17 C 0.05 1.99 7.34 83.56 0.61 2.60 14 18 Br 0.03 1.00 32.90 -20.37 -0.67 0.33 14 19 H 0.09 1.65 8.14 -2.39 -0.02 1.63 14 20 H 0.11 1.91 8.14 -2.38 -0.02 1.89 14 21 H 0.10 1.84 7.66 -2.38 -0.02 1.83 14 22 H 0.21 6.54 7.51 -2.91 -0.02 6.52 14 23 H 0.36 15.68 8.14 -74.06 -0.60 15.08 14 24 H 0.26 14.45 8.31 -92.71 -0.77 13.68 14 Total: -1.00 -66.30 241.58 1.90 -64.40 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.63 Total: 10.70 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 3.68 Total: -12.50 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -1.90 Total: -76.94 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.87 Total: -31.17 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 35 Polarization: 1.00 SS G_CDS: -0.67 Total: 0.33 kcal Total: -66.30 1.90 -64.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606289023.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.425 kcal (2) G-P(sol) polarization free energy of solvation -66.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds