Wall clock time and date at job start Mon Mar 30 2020 04:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29444 * 117.96143 * 2 1 4 4 C 1.50694 * 117.96432 * 359.50365 * 3 2 1 5 5 C 1.50074 * 124.07322 * 179.53542 * 3 2 1 6 6 C 1.53023 * 110.14907 * 17.12739 * 5 3 2 7 7 H 1.08996 * 109.63926 * 70.46015 * 6 5 3 8 8 S 1.81401 * 109.64052 * 190.88397 * 6 5 3 9 9 O 1.42100 * 110.53996 * 193.37608 * 8 6 5 10 10 O 1.42092 * 110.54540 * 56.62209 * 8 6 5 11 11 O 1.52203 * 104.44753 * 304.99453 * 8 6 5 12 12 C 1.53395 * 108.43536 * 310.56158 * 6 5 3 13 13 H 1.08996 * 109.64861 * 307.75672 * 12 6 5 14 14 C 1.50703 * 109.64090 * 187.12029 * 12 6 5 15 15 H 1.07997 * 119.99785 * 0.02562 * 14 12 6 16 16 C 1.37876 * 119.99863 * 180.02562 * 14 12 6 17 17 N 1.31515 * 120.00141 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99867 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46988 * 59.99706 * 18 16 14 20 20 H 1.48499 * 109.46956 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47103 * 300.00017 * 18 16 14 22 22 C 1.50066 * 117.96196 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47321 * 5.26654 * 1 2 3 24 24 H 1.08993 * 109.47152 * 125.27069 * 1 2 3 25 25 H 1.09004 * 109.47119 * 245.26899 * 1 2 3 26 26 H 1.08996 * 109.47327 * 175.21228 * 4 3 2 27 27 H 1.08997 * 109.47649 * 295.21946 * 4 3 2 28 28 H 1.09006 * 109.46968 * 55.21444 * 4 3 2 29 29 H 1.08996 * 109.35486 * 256.91710 * 5 3 2 30 30 H 1.09004 * 109.35404 * 137.33906 * 5 3 2 31 31 H 0.96698 * 114.00022 * 179.97438 * 11 8 6 32 32 H 0.97002 * 120.00057 * 180.02562 * 17 16 14 33 33 H 1.09007 * 109.35676 * 317.33218 * 22 2 1 34 34 H 1.08998 * 109.36164 * 77.06214 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2696 2.3915 -0.0115 5 6 3.6061 1.3031 0.0101 6 6 4.2793 -0.0074 -0.4032 7 1 4.1086 -0.1882 -1.4644 8 16 6.0616 0.0946 -0.0809 9 8 6.7470 -0.9682 -0.7287 10 8 6.3046 0.3978 1.2859 11 8 6.5117 1.3420 -0.8279 12 6 3.6704 -1.1473 0.4232 13 1 3.7166 -0.8968 1.4830 14 6 4.4317 -2.4222 0.1659 15 1 5.2675 -2.4233 -0.5180 16 6 4.0610 -3.5871 0.8036 17 7 3.0428 -3.5857 1.6360 18 14 5.0042 -5.1675 0.4841 19 1 6.4256 -4.9827 0.8721 20 1 4.4118 -6.2681 1.2859 21 1 4.9253 -5.5079 -0.9592 22 6 2.2106 -1.3255 0.0006 23 1 -0.3634 1.0233 -0.0943 24 1 -0.3633 -0.5934 -0.8390 25 1 -0.3633 -0.4299 0.9334 26 1 1.9136 3.2666 0.0756 27 1 0.7105 2.4435 -0.9457 28 1 0.5740 2.3674 0.8273 29 1 3.9333 1.5769 1.0131 30 1 3.8897 2.0909 -0.6878 31 1 7.4569 1.5293 -0.7468 32 1 2.7823 -4.4052 2.0849 33 1 1.7121 -1.9989 0.6979 34 1 2.1767 -1.7531 -1.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675078742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:02 Heat of formation + Delta-G solvation = -127.197259 kcal Electronic energy + Delta-G solvation = -18777.101646 eV Core-core repulsion = 15801.853482 eV Total energy + Delta-G solvation = -2975.248163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.51536 -37.84026 -36.41110 -35.25657 -34.03229 -32.18234 -30.61994 -27.19387 -26.32872 -24.04721 -22.36811 -21.26963 -19.64844 -17.72886 -16.91136 -16.77340 -15.84341 -15.43108 -14.87071 -14.40146 -14.11394 -13.87442 -13.48047 -13.03765 -12.74483 -12.48163 -12.19674 -12.06771 -11.77649 -11.54744 -11.37273 -11.33121 -11.26989 -11.20916 -10.99079 -10.80209 -10.70742 -10.30025 -10.20200 -9.70544 -9.35523 -8.71888 -8.48663 -7.81120 -6.12287 -4.22921 0.99590 2.83716 3.34188 3.37223 3.43238 3.45793 4.24553 4.40484 4.90887 5.20411 5.22848 5.35827 5.60878 5.70573 5.78137 5.83697 5.90467 5.97253 6.07919 6.20087 6.23531 6.29122 6.38913 6.46274 6.57918 6.85524 6.94315 7.29913 7.52645 7.62461 7.83570 7.95350 8.12905 8.87664 9.48982 10.94122 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.011531 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.114729 B = 2427.636261 C = 3906.378087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C -0.159 4.159 4 C -0.110 4.110 5 C -0.057 4.057 6 C -0.545 4.545 7 H 0.129 0.871 8 S 2.630 3.370 9 O -0.968 6.968 10 O -0.979 6.979 11 O -0.912 6.912 12 C 0.075 3.925 13 H 0.048 0.952 14 C -0.572 4.572 15 H 0.088 0.912 16 C 0.078 3.922 17 N -0.882 5.882 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.067 4.067 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.447 0.553 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 10.090 -4.207 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 C -0.160 4.160 4 C -0.167 4.167 5 C -0.095 4.095 6 C -0.658 4.658 7 H 0.147 0.853 8 S 2.727 3.273 9 O -0.966 6.966 10 O -0.977 6.977 11 O -0.778 6.778 12 C 0.055 3.945 13 H 0.066 0.934 14 C -0.610 4.610 15 H 0.106 0.894 16 C -0.126 4.126 17 N -0.518 5.518 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.105 4.105 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.313 0.687 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.763 9.912 -4.004 10.717 hybrid contribution 0.248 -0.894 -0.273 0.968 sum -0.516 9.017 -4.277 9.994 Atomic orbital electron populations 1.21110 0.93878 1.01680 1.01808 1.21294 0.95075 0.96362 0.97492 1.20255 0.94009 0.94365 1.07345 1.20843 0.98918 0.95852 1.01049 1.20093 0.93843 0.93951 1.01596 1.30171 1.19823 1.05118 1.10673 0.85323 1.04027 0.78754 0.71339 0.73159 1.93552 1.71835 1.55952 1.75285 1.93533 1.84829 1.82417 1.36970 1.85562 1.38701 1.68566 1.84922 1.18583 0.92768 0.88943 0.94190 0.93407 1.21778 1.16886 0.93859 1.28483 0.89431 1.24891 0.94606 0.99172 0.93944 1.69898 1.26187 1.28271 1.27465 0.86600 0.80640 0.82083 0.78566 1.19615 1.21245 1.19853 1.20496 0.96352 0.92046 1.01650 0.92119 0.92289 0.91819 0.92914 0.92422 0.92233 0.90306 0.90959 0.68694 0.92560 0.88066 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.63 36.00 0.35 -1.64 16 2 C -0.10 -1.92 5.84 -100.94 -0.59 -2.50 16 3 C -0.16 -2.74 5.84 -100.94 -0.59 -3.33 16 4 C -0.11 -1.49 8.35 36.00 0.30 -1.18 16 5 C -0.06 -0.98 4.80 -28.17 -0.14 -1.12 16 6 C -0.55 -10.76 2.48 -26.51 -0.07 -10.82 16 7 H 0.13 2.37 8.13 -51.93 -0.42 1.95 16 8 S 2.63 50.19 4.52 -107.50 -0.49 49.70 16 9 O -0.97 -21.49 15.80 -67.04 -1.06 -22.54 16 10 O -0.98 -21.24 17.89 -67.04 -1.20 -22.44 16 11 O -0.91 -12.55 13.05 -67.56 -0.88 -13.43 16 12 C 0.08 1.80 1.77 -91.56 -0.16 1.64 16 13 H 0.05 1.26 8.12 -51.93 -0.42 0.84 16 14 C -0.57 -15.38 7.76 -34.44 -0.27 -15.65 16 15 H 0.09 2.37 5.34 -52.49 -0.28 2.09 16 16 C 0.08 2.13 5.31 -17.82 -0.09 2.04 16 17 N -0.88 -24.42 11.54 55.43 0.64 -23.78 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.07 -1.50 4.76 -28.18 -0.13 -1.64 16 23 H 0.06 0.80 5.21 -51.93 -0.27 0.53 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.64 7.93 -51.93 -0.41 0.22 16 27 H 0.06 0.71 7.70 -51.93 -0.40 0.31 16 28 H 0.06 0.76 7.31 -51.93 -0.38 0.38 16 29 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.45 3.79 9.03 67.38 0.61 4.40 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.10 2.50 6.51 -51.93 -0.34 2.16 16 34 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 284.25 15.07 4.28 4.28 Total: -1.00 -32.82 284.25 -8.66 -41.48 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.55 Total: 4.32 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: -1.39 Total: -34.20 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.64 Total: -23.78 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -3.14 Total: -58.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 50.19 SS G_CDS: -0.49 Total: 49.70 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.82 -8.66 -41.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675078742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.716 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds