Wall clock time and date at job start Mon Mar 30 2020 04:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29444 * 117.96143 * 2 1 4 4 C 1.50694 * 117.96432 * 359.50365 * 3 2 1 5 5 C 1.50074 * 124.07322 * 179.53542 * 3 2 1 6 6 C 1.53023 * 110.14907 * 17.12739 * 5 3 2 7 7 H 1.08996 * 109.63926 * 70.46015 * 6 5 3 8 8 S 1.81401 * 109.64052 * 190.88397 * 6 5 3 9 9 O 1.42100 * 110.53996 * 193.37608 * 8 6 5 10 10 O 1.42092 * 110.54540 * 56.62209 * 8 6 5 11 11 O 1.52203 * 104.44753 * 304.99453 * 8 6 5 12 12 C 1.53395 * 108.43536 * 310.56158 * 6 5 3 13 13 H 1.08996 * 109.64861 * 307.75672 * 12 6 5 14 14 C 1.50703 * 109.64090 * 187.12029 * 12 6 5 15 15 H 1.07997 * 119.99785 * 0.02562 * 14 12 6 16 16 C 1.37876 * 119.99863 * 180.02562 * 14 12 6 17 17 N 1.31515 * 120.00141 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99867 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46988 * 59.99706 * 18 16 14 20 20 H 1.48499 * 109.46956 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47103 * 300.00017 * 18 16 14 22 22 C 1.50066 * 117.96196 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47321 * 5.26654 * 1 2 3 24 24 H 1.08993 * 109.47152 * 125.27069 * 1 2 3 25 25 H 1.09004 * 109.47119 * 245.26899 * 1 2 3 26 26 H 1.08996 * 109.47327 * 175.21228 * 4 3 2 27 27 H 1.08997 * 109.47649 * 295.21946 * 4 3 2 28 28 H 1.09006 * 109.46968 * 55.21444 * 4 3 2 29 29 H 1.08996 * 109.35486 * 256.91710 * 5 3 2 30 30 H 1.09004 * 109.35404 * 137.33906 * 5 3 2 31 31 H 0.96698 * 114.00022 * 179.97438 * 11 8 6 32 32 H 0.97002 * 120.00057 * 180.02562 * 17 16 14 33 33 H 1.09007 * 109.35676 * 317.33218 * 22 2 1 34 34 H 1.08998 * 109.36164 * 77.06214 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2696 2.3915 -0.0115 5 6 3.6061 1.3031 0.0101 6 6 4.2793 -0.0074 -0.4032 7 1 4.1086 -0.1882 -1.4644 8 16 6.0616 0.0946 -0.0809 9 8 6.7470 -0.9682 -0.7287 10 8 6.3046 0.3978 1.2859 11 8 6.5117 1.3420 -0.8279 12 6 3.6704 -1.1473 0.4232 13 1 3.7166 -0.8968 1.4830 14 6 4.4317 -2.4222 0.1659 15 1 5.2675 -2.4233 -0.5180 16 6 4.0610 -3.5871 0.8036 17 7 3.0428 -3.5857 1.6360 18 14 5.0042 -5.1675 0.4841 19 1 6.4256 -4.9827 0.8721 20 1 4.4118 -6.2681 1.2859 21 1 4.9253 -5.5079 -0.9592 22 6 2.2106 -1.3255 0.0006 23 1 -0.3634 1.0233 -0.0943 24 1 -0.3633 -0.5934 -0.8390 25 1 -0.3633 -0.4299 0.9334 26 1 1.9136 3.2666 0.0756 27 1 0.7105 2.4435 -0.9457 28 1 0.5740 2.3674 0.8273 29 1 3.9333 1.5769 1.0131 30 1 3.8897 2.0909 -0.6878 31 1 7.4569 1.5293 -0.7468 32 1 2.7823 -4.4052 2.0849 33 1 1.7121 -1.9989 0.6979 34 1 2.1767 -1.7531 -1.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675078742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:02 Heat of formation + Delta-G solvation = -151.786738 kcal Electronic energy + Delta-G solvation = -18778.167926 eV Core-core repulsion = 15801.853482 eV Total energy + Delta-G solvation = -2976.314443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00989 -39.10809 -38.06892 -36.90890 -35.73649 -33.88117 -32.19856 -28.72922 -27.79112 -25.74489 -23.80837 -22.84332 -21.21458 -19.19345 -18.75141 -18.33630 -17.43329 -16.91550 -16.73499 -15.89050 -15.49519 -15.30969 -14.86687 -14.64601 -14.20021 -14.04712 -13.83393 -13.42673 -13.22915 -13.16385 -12.97606 -12.96643 -12.77908 -12.70225 -12.61947 -12.39743 -12.25153 -12.11462 -11.89921 -11.49010 -11.09381 -10.62205 -10.39733 -9.21485 -8.19312 -6.35500 -0.53214 1.38609 1.40601 1.45884 1.49370 2.04398 2.39725 2.72530 3.10920 3.42299 3.75614 3.94896 4.16978 4.37096 4.50722 4.59853 4.67415 4.74691 4.84908 4.89425 4.99638 5.06309 5.10603 5.20815 5.25923 5.31921 5.37240 5.59627 5.67407 5.85428 6.00591 6.15517 6.40691 6.80516 7.37973 8.85821 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.011531 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.114729 B = 2427.636261 C = 3906.378087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.065 4.065 6 C -0.549 4.549 7 H 0.141 0.859 8 S 2.659 3.341 9 O -1.004 7.004 10 O -1.010 7.010 11 O -0.888 6.888 12 C 0.070 3.930 13 H 0.014 0.986 14 C -0.588 4.588 15 H 0.083 0.917 16 C 0.031 3.969 17 N -0.904 5.904 18 Si 0.939 3.061 19 H -0.276 1.276 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.058 4.058 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.471 0.529 32 H 0.265 0.735 33 H 0.068 0.932 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 12.192 -5.303 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.137 4.137 3 C -0.148 4.148 4 C -0.165 4.165 5 C -0.103 4.103 6 C -0.661 4.661 7 H 0.159 0.841 8 S 2.756 3.244 9 O -1.002 7.002 10 O -1.009 7.009 11 O -0.760 6.760 12 C 0.051 3.949 13 H 0.032 0.968 14 C -0.626 4.626 15 H 0.101 0.899 16 C -0.170 4.170 17 N -0.541 5.541 18 Si 0.764 3.236 19 H -0.201 1.201 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.097 4.097 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.342 0.658 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.919 12.015 -5.100 13.085 hybrid contribution 0.390 -1.448 0.046 1.500 sum -0.529 10.567 -5.054 11.725 Atomic orbital electron populations 1.21072 0.91590 1.03540 1.01543 1.21221 0.96818 0.94922 1.00692 1.20683 0.94411 0.95542 1.04181 1.20904 0.98985 0.94206 1.02446 1.20308 0.93958 0.93389 1.02622 1.30096 1.20392 1.05022 1.10610 0.84080 1.02962 0.78051 0.71145 0.72244 1.93505 1.72583 1.58272 1.75848 1.93496 1.85141 1.83065 1.39149 1.85457 1.40928 1.65988 1.83581 1.18400 0.94044 0.89481 0.93016 0.96824 1.22139 1.17001 0.95359 1.28089 0.89939 1.25592 0.95481 1.01820 0.94138 1.70009 1.27120 1.28796 1.28182 0.85891 0.79206 0.79554 0.78908 1.20117 1.20112 1.19076 1.20195 0.95657 0.94067 0.99752 0.89167 0.92068 0.92589 0.90919 0.90473 0.91300 0.90362 0.87024 0.65798 0.92547 0.91330 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 9.63 71.23 0.69 -2.90 16 2 C -0.14 -5.02 5.84 -15.10 -0.09 -5.11 16 3 C -0.15 -4.71 5.84 -15.10 -0.09 -4.80 16 4 C -0.11 -2.46 8.35 71.23 0.60 -1.87 16 5 C -0.07 -2.08 4.80 29.66 0.14 -1.94 16 6 C -0.55 -21.22 2.48 30.73 0.08 -21.15 16 7 H 0.14 5.04 8.13 -2.39 -0.02 5.02 16 8 S 2.66 98.95 4.52 -56.49 -0.26 98.70 16 9 O -1.00 -44.24 15.80 -118.57 -1.87 -46.11 16 10 O -1.01 -43.43 17.89 -118.57 -2.12 -45.56 16 11 O -0.89 -21.82 13.05 -118.07 -1.54 -23.36 16 12 C 0.07 3.47 1.77 -11.40 -0.02 3.45 16 13 H 0.01 0.75 8.12 -2.39 -0.02 0.73 16 14 C -0.59 -32.49 7.76 25.60 0.20 -32.29 16 15 H 0.08 4.56 5.34 -2.91 -0.02 4.55 16 16 C 0.03 1.76 5.31 84.65 0.45 2.21 16 17 N -0.90 -51.84 11.54 21.45 0.25 -51.59 16 18 Si 0.94 44.95 29.54 68.60 2.03 46.98 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C -0.06 -2.69 4.76 29.66 0.14 -2.55 16 23 H 0.09 2.09 5.21 -2.39 -0.01 2.08 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.07 1.38 7.93 -2.39 -0.02 1.36 16 27 H 0.08 1.51 7.70 -2.39 -0.02 1.49 16 28 H 0.07 1.48 7.31 -2.38 -0.02 1.46 16 29 H 0.08 2.55 7.92 -2.39 -0.02 2.53 16 30 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 31 H 0.47 6.46 9.03 -87.93 -0.79 5.66 16 32 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.07 3.57 6.51 -2.38 -0.02 3.55 16 34 H 0.04 2.06 8.09 -2.39 -0.02 2.04 16 Total: -1.00 -72.60 284.25 -1.10 -73.71 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.32 Total: 14.17 kcal Atomic # 6 Polarization: -69.03 SS G_CDS: 2.09 Total: -66.94 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.25 Total: -51.59 kcal Atomic # 8 Polarization: -109.49 SS G_CDS: -5.54 Total: -115.02 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 98.95 SS G_CDS: -0.26 Total: 98.70 kcal Total: -72.60 -1.10 -73.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675078742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.081 kcal (2) G-P(sol) polarization free energy of solvation -72.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds