Wall clock time and date at job start Mon Mar 30 2020 04:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57879 * 2 1 4 4 O 1.42097 * 108.57629 * 228.97761 * 2 1 3 5 5 C 1.81391 * 101.92304 * 114.48919 * 2 1 3 6 6 C 1.53964 * 113.58703 * 282.67707 * 5 2 1 7 7 C 1.52812 * 86.79088 * 220.69409 * 6 5 2 8 8 C 1.52815 * 88.07646 * 24.89143 * 7 6 5 9 9 C 1.53558 * 115.47560 * 267.46819 * 7 6 5 10 10 C 1.54720 * 103.75111 * 207.52727 * 9 7 6 11 11 C 1.54538 * 104.07387 * 359.29939 * 10 9 7 12 12 H 1.09008 * 110.33358 * 264.78054 * 11 10 9 13 13 C 1.50700 * 110.33256 * 142.55255 * 11 10 9 14 14 H 1.07991 * 120.00070 * 359.97438 * 13 11 10 15 15 C 1.37880 * 120.00058 * 180.02562 * 13 11 10 16 16 N 1.31522 * 119.99457 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00104 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46994 * 89.99841 * 17 15 13 19 19 H 1.48502 * 109.47371 * 209.99507 * 17 15 13 20 20 H 1.48497 * 109.47351 * 329.99942 * 17 15 13 21 21 O 1.43350 * 115.71689 * 142.64048 * 7 6 5 22 22 H 1.08999 * 109.47426 * 65.50794 * 1 2 3 23 23 H 1.08998 * 109.47096 * 185.51167 * 1 2 3 24 24 H 1.09006 * 109.47169 * 305.50874 * 1 2 3 25 25 H 1.09003 * 112.83257 * 53.88794 * 5 2 1 26 26 H 1.08994 * 113.65683 * 335.17137 * 6 5 2 27 27 H 1.08999 * 113.66112 * 106.22327 * 6 5 2 28 28 H 1.08997 * 113.65676 * 220.62566 * 8 7 6 29 29 H 1.08999 * 113.65780 * 89.58154 * 8 7 6 30 30 H 1.08996 * 110.57001 * 326.09572 * 9 7 6 31 31 H 1.09002 * 110.56401 * 88.96272 * 9 7 6 32 32 H 1.08996 * 110.50596 * 117.94966 * 10 9 7 33 33 H 1.09003 * 110.50491 * 240.64734 * 10 9 7 34 34 H 0.97002 * 119.99140 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 2.0130 0.2407 2.7925 7 6 3.2908 -0.3640 3.3728 8 6 3.6912 -0.7533 1.9504 9 6 3.0852 -1.5349 4.3447 10 6 4.3253 -1.4691 5.2675 11 6 5.1363 -0.2718 4.7223 12 1 5.9003 -0.6176 4.0259 13 6 5.7679 0.4929 5.8569 14 1 5.6158 0.1704 6.8762 15 6 6.5392 1.6050 5.5936 16 7 6.7240 1.9981 4.3522 17 14 7.3215 2.5534 6.9999 18 1 8.6674 1.9944 7.2856 19 1 7.4497 3.9837 6.6217 20 1 6.4696 2.4359 8.2106 21 8 4.1683 0.5550 4.0363 22 1 -0.3634 0.4260 -0.9352 23 1 -0.3633 -1.0229 0.0987 24 1 -0.3634 0.5969 0.8366 25 1 1.6968 -1.6965 1.7666 26 1 2.1139 1.2887 2.5104 27 1 1.1248 0.0459 3.3936 28 1 4.1439 -1.7422 1.8786 29 1 4.2642 0.0151 1.4315 30 1 2.1707 -1.3976 4.9217 31 1 3.0598 -2.4812 3.8043 32 1 4.0243 -1.2883 6.2994 33 1 4.9056 -2.3888 5.1936 34 1 7.2664 2.7807 4.1670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716115515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:51 Heat of formation + Delta-G solvation = -91.177347 kcal Electronic energy + Delta-G solvation = -18257.522859 eV Core-core repulsion = 15283.836636 eV Total energy + Delta-G solvation = -2973.686223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77372 -36.90841 -35.95209 -35.70292 -32.39988 -30.95574 -29.70851 -27.71149 -25.71088 -24.55022 -22.67949 -20.29789 -18.90355 -18.31009 -16.99608 -16.70279 -16.07754 -15.87583 -15.17187 -14.64556 -14.45758 -13.96757 -13.74783 -13.34054 -13.25941 -12.72765 -12.35454 -12.14600 -11.99152 -11.88567 -11.71880 -11.44255 -11.11483 -10.92892 -10.90400 -10.80525 -10.60286 -10.29722 -10.10411 -9.77386 -9.60987 -9.13651 -8.61622 -8.11309 -6.03154 -4.16466 0.04482 2.77259 3.30465 3.37607 3.40444 3.62037 3.93392 4.36446 4.41118 4.54957 4.68203 4.73960 4.93663 4.99236 5.22533 5.39184 5.49915 5.60110 5.71552 5.83211 5.92222 5.96320 6.13761 6.16598 6.39910 6.61914 6.62413 6.72275 6.79808 7.47795 7.87005 8.17868 8.50097 8.94631 9.54545 11.04678 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.034646 B = 0.005565 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.991550 B = 5030.415920 C = 5436.988790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.422 3.578 3 O -0.931 6.931 4 O -0.947 6.947 5 C -0.598 4.598 6 C -0.099 4.099 7 C 0.086 3.914 8 C -0.118 4.118 9 C -0.128 4.128 10 C -0.147 4.147 11 C 0.205 3.795 12 H 0.029 0.971 13 C -0.533 4.533 14 H 0.064 0.936 15 C 0.076 3.924 16 N -0.862 5.862 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.333 6.333 22 H 0.124 0.876 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.147 0.853 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -6.590 -5.561 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.605 3.395 3 O -0.928 6.928 4 O -0.944 6.944 5 C -0.708 4.708 6 C -0.137 4.137 7 C 0.043 3.957 8 C -0.157 4.157 9 C -0.166 4.166 10 C -0.185 4.185 11 C 0.150 3.850 12 H 0.047 0.953 13 C -0.570 4.570 14 H 0.082 0.918 15 C -0.130 4.130 16 N -0.498 5.498 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 O -0.251 6.251 22 H 0.143 0.857 23 H 0.143 0.857 24 H 0.148 0.852 25 H 0.165 0.835 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.155 -5.922 -6.362 14.943 hybrid contribution -0.266 -0.063 1.185 1.216 sum -12.421 -5.985 -5.177 14.728 Atomic orbital electron populations 1.30266 1.27723 1.11206 1.11426 1.07836 0.78070 0.76050 0.77567 1.93624 1.78690 1.34130 1.86366 1.93563 1.79057 1.67233 1.54571 1.31558 1.08738 1.11522 1.18968 1.22780 0.99201 0.98566 0.93191 1.22543 0.91212 0.91144 0.90826 1.23128 0.89334 1.03650 0.99592 1.22563 0.99617 0.97014 0.97367 1.23092 0.95665 1.00258 0.99477 1.20593 0.86634 0.86436 0.91356 0.95296 1.21033 1.30351 1.13391 0.92223 0.91820 1.25105 0.95361 0.96957 0.95553 1.70027 1.37025 1.24499 1.18252 0.86583 0.79540 0.79280 0.82471 1.20519 1.21035 1.19753 1.89406 1.41626 1.28559 1.65541 0.85725 0.85651 0.85248 0.83544 0.87287 0.89804 0.89878 0.88024 0.91431 0.91894 0.91601 0.92564 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.88 10.62 101.05 1.07 -3.81 16 2 S 2.42 29.75 5.30 -107.50 -0.57 29.18 16 3 O -0.93 -15.53 17.34 -57.83 -1.00 -16.53 16 4 O -0.95 -14.57 18.10 -57.83 -1.05 -15.61 16 5 C -0.60 -7.42 4.01 -25.74 -0.10 -7.53 16 6 C -0.10 -1.46 7.19 -26.32 -0.19 -1.65 16 7 C 0.09 1.61 1.26 -90.53 -0.11 1.50 16 8 C -0.12 -2.00 7.14 -26.33 -0.19 -2.19 16 9 C -0.13 -2.14 6.30 -25.54 -0.16 -2.30 16 10 C -0.15 -2.96 6.63 -25.02 -0.17 -3.12 16 11 C 0.20 5.22 3.07 -27.08 -0.08 5.13 16 12 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 13 C -0.53 -14.87 8.77 -34.44 -0.30 -15.17 16 14 H 0.06 1.72 7.56 -52.49 -0.40 1.32 16 15 C 0.08 2.17 5.43 -17.82 -0.10 2.07 16 16 N -0.86 -25.72 13.06 55.43 0.72 -24.99 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 O -0.33 -8.47 10.81 -35.23 -0.38 -8.85 16 22 H 0.12 0.82 8.14 -51.92 -0.42 0.40 16 23 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.15 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.11 1.73 7.48 -51.93 -0.39 1.35 16 27 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 28 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 29 H 0.10 1.91 8.10 -51.93 -0.42 1.49 16 30 H 0.07 1.01 8.04 -51.93 -0.42 0.60 16 31 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 32 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 295.90 15.07 4.46 4.46 Total: -1.00 -35.99 295.90 -8.11 -44.09 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.94 Total: -1.03 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -0.33 Total: -27.06 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.72 Total: -24.99 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.43 Total: -40.99 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 29.75 SS G_CDS: -0.57 Total: 29.18 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.99 -8.11 -44.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716115515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.083 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds