Wall clock time and date at job start Mon Mar 30 2020 04:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57879 * 2 1 4 4 O 1.42097 * 108.57629 * 228.97761 * 2 1 3 5 5 C 1.81391 * 101.92304 * 114.48919 * 2 1 3 6 6 C 1.53964 * 113.58703 * 282.67707 * 5 2 1 7 7 C 1.52812 * 86.79088 * 220.69409 * 6 5 2 8 8 C 1.52815 * 88.07646 * 24.89143 * 7 6 5 9 9 C 1.53558 * 115.47560 * 267.46819 * 7 6 5 10 10 C 1.54720 * 103.75111 * 207.52727 * 9 7 6 11 11 C 1.54538 * 104.07387 * 359.29939 * 10 9 7 12 12 H 1.09008 * 110.33358 * 264.78054 * 11 10 9 13 13 C 1.50700 * 110.33256 * 142.55255 * 11 10 9 14 14 H 1.07991 * 120.00070 * 359.97438 * 13 11 10 15 15 C 1.37880 * 120.00058 * 180.02562 * 13 11 10 16 16 N 1.31522 * 119.99457 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00104 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46994 * 89.99841 * 17 15 13 19 19 H 1.48502 * 109.47371 * 209.99507 * 17 15 13 20 20 H 1.48497 * 109.47351 * 329.99942 * 17 15 13 21 21 O 1.43350 * 115.71689 * 142.64048 * 7 6 5 22 22 H 1.08999 * 109.47426 * 65.50794 * 1 2 3 23 23 H 1.08998 * 109.47096 * 185.51167 * 1 2 3 24 24 H 1.09006 * 109.47169 * 305.50874 * 1 2 3 25 25 H 1.09003 * 112.83257 * 53.88794 * 5 2 1 26 26 H 1.08994 * 113.65683 * 335.17137 * 6 5 2 27 27 H 1.08999 * 113.66112 * 106.22327 * 6 5 2 28 28 H 1.08997 * 113.65676 * 220.62566 * 8 7 6 29 29 H 1.08999 * 113.65780 * 89.58154 * 8 7 6 30 30 H 1.08996 * 110.57001 * 326.09572 * 9 7 6 31 31 H 1.09002 * 110.56401 * 88.96272 * 9 7 6 32 32 H 1.08996 * 110.50596 * 117.94966 * 10 9 7 33 33 H 1.09003 * 110.50491 * 240.64734 * 10 9 7 34 34 H 0.97002 * 119.99140 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 2.0130 0.2407 2.7925 7 6 3.2908 -0.3640 3.3728 8 6 3.6912 -0.7533 1.9504 9 6 3.0852 -1.5349 4.3447 10 6 4.3253 -1.4691 5.2675 11 6 5.1363 -0.2718 4.7223 12 1 5.9003 -0.6176 4.0259 13 6 5.7679 0.4929 5.8569 14 1 5.6158 0.1704 6.8762 15 6 6.5392 1.6050 5.5936 16 7 6.7240 1.9981 4.3522 17 14 7.3215 2.5534 6.9999 18 1 8.6674 1.9944 7.2856 19 1 7.4497 3.9837 6.6217 20 1 6.4696 2.4359 8.2106 21 8 4.1683 0.5550 4.0363 22 1 -0.3634 0.4260 -0.9352 23 1 -0.3633 -1.0229 0.0987 24 1 -0.3634 0.5969 0.8366 25 1 1.6968 -1.6965 1.7666 26 1 2.1139 1.2887 2.5104 27 1 1.1248 0.0459 3.3936 28 1 4.1439 -1.7422 1.8786 29 1 4.2642 0.0151 1.4315 30 1 2.1707 -1.3976 4.9217 31 1 3.0598 -2.4812 3.8043 32 1 4.0243 -1.2883 6.2994 33 1 4.9056 -2.3888 5.1936 34 1 7.2664 2.7807 4.1670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716115515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:51 Heat of formation + Delta-G solvation = -119.750192 kcal Electronic energy + Delta-G solvation = -18258.761871 eV Core-core repulsion = 15283.836636 eV Total energy + Delta-G solvation = -2974.925234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.19935 -38.02843 -37.30112 -37.00076 -34.49621 -32.59168 -30.38004 -29.47998 -26.98762 -26.17294 -24.14869 -22.05080 -20.11906 -19.49412 -18.76666 -18.10927 -17.11806 -16.95338 -16.76847 -16.32825 -15.99125 -15.47659 -15.16679 -14.27948 -14.10913 -13.89396 -13.85222 -13.53688 -13.48508 -13.13528 -13.01425 -12.89627 -12.63940 -12.46980 -12.34561 -12.28438 -11.95805 -11.79192 -11.72881 -11.19696 -11.10546 -10.91592 -10.68208 -9.96447 -8.17915 -6.39003 -0.88785 1.39135 1.41232 1.52154 1.87469 2.39272 2.62097 2.94939 3.04855 3.35179 3.47803 3.51436 3.74462 4.12000 4.16064 4.17669 4.29103 4.36758 4.43529 4.64355 4.69400 4.73217 4.90020 4.99260 5.00543 5.01993 5.18757 5.26177 5.38715 5.53672 5.72698 6.14746 6.56683 6.94705 7.37293 8.90563 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.034646 B = 0.005565 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.991550 B = 5030.415920 C = 5436.988790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.414 3.586 3 O -0.991 6.991 4 O -0.987 6.987 5 C -0.570 4.570 6 C -0.095 4.095 7 C 0.055 3.945 8 C -0.138 4.138 9 C -0.114 4.114 10 C -0.142 4.142 11 C 0.196 3.804 12 H -0.012 1.012 13 C -0.553 4.553 14 H 0.068 0.932 15 C 0.018 3.982 16 N -0.907 5.907 17 Si 0.965 3.035 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.261 1.261 21 O -0.378 6.378 22 H 0.140 0.860 23 H 0.164 0.836 24 H 0.154 0.846 25 H 0.199 0.801 26 H 0.085 0.915 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 -8.247 -4.658 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.602 3.398 3 O -0.989 6.989 4 O -0.984 6.984 5 C -0.679 4.679 6 C -0.133 4.133 7 C 0.013 3.987 8 C -0.177 4.177 9 C -0.151 4.151 10 C -0.180 4.180 11 C 0.140 3.860 12 H 0.006 0.994 13 C -0.590 4.590 14 H 0.086 0.914 15 C -0.184 4.184 16 N -0.545 5.545 17 Si 0.789 3.211 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.185 1.185 21 O -0.297 6.297 22 H 0.158 0.842 23 H 0.182 0.818 24 H 0.172 0.828 25 H 0.216 0.784 26 H 0.103 0.897 27 H 0.147 0.853 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.500 -7.597 -5.451 18.102 hybrid contribution 0.715 0.406 0.847 1.180 sum -14.786 -7.191 -4.604 17.074 Atomic orbital electron populations 1.29972 1.19647 1.14538 1.13497 1.07675 0.81094 0.74224 0.76802 1.93555 1.81681 1.36771 1.86853 1.93513 1.81692 1.67554 1.55630 1.31478 1.04928 1.13324 1.18201 1.22768 0.98691 0.97778 0.94092 1.23212 0.92243 0.91815 0.91420 1.23085 0.92820 1.02862 0.98950 1.22561 0.98714 0.97497 0.96315 1.22976 0.96857 0.98261 0.99927 1.20448 0.87078 0.88300 0.90133 0.99436 1.21534 1.30612 1.13636 0.93230 0.91390 1.26050 0.96051 0.98167 0.98126 1.70197 1.38400 1.25174 1.20695 0.85465 0.78938 0.77428 0.79222 1.19381 1.21087 1.18550 1.89286 1.42671 1.31085 1.66664 0.84181 0.81817 0.82807 0.78396 0.89684 0.85337 0.88886 0.92033 0.88697 0.88402 0.91723 0.91146 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.87 10.62 113.37 1.20 -4.66 16 2 S 2.41 56.09 5.30 -56.49 -0.30 55.79 16 3 O -0.99 -34.35 17.34 -127.37 -2.21 -36.56 16 4 O -0.99 -29.80 18.10 -127.37 -2.30 -32.10 16 5 C -0.57 -12.62 4.01 31.24 0.13 -12.50 16 6 C -0.10 -2.60 7.19 30.86 0.22 -2.38 16 7 C 0.05 2.03 1.26 -10.74 -0.01 2.02 16 8 C -0.14 -4.78 7.14 30.85 0.22 -4.56 16 9 C -0.11 -3.44 6.30 31.37 0.20 -3.24 16 10 C -0.14 -5.61 6.63 31.70 0.21 -5.40 16 11 C 0.20 10.40 3.07 30.37 0.09 10.49 16 12 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 13 C -0.55 -31.89 8.77 25.60 0.22 -31.66 16 14 H 0.07 3.72 7.56 -2.91 -0.02 3.70 16 15 C 0.02 1.04 5.43 84.65 0.46 1.50 16 16 N -0.91 -57.13 13.06 21.45 0.28 -56.85 16 17 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 O -0.38 -20.07 10.81 -148.98 -1.61 -21.68 16 22 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.20 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.08 2.73 7.48 -2.39 -0.02 2.72 16 27 H 0.13 2.32 8.04 -2.39 -0.02 2.30 16 28 H 0.09 2.88 8.04 -2.39 -0.02 2.86 16 29 H 0.06 2.57 8.10 -2.39 -0.02 2.55 16 30 H 0.09 2.37 8.04 -2.39 -0.02 2.35 16 31 H 0.10 2.28 7.90 -2.39 -0.02 2.27 16 32 H 0.06 2.53 7.70 -2.39 -0.02 2.51 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -86.78 295.90 -0.09 -86.87 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.08 Total: 7.87 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 2.94 Total: -50.40 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.28 Total: -56.85 kcal Atomic # 8 Polarization: -84.22 SS G_CDS: -6.13 Total: -90.34 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 56.09 SS G_CDS: -0.30 Total: 55.79 kcal Total: -86.78 -0.09 -86.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716115515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.876 kcal (2) G-P(sol) polarization free energy of solvation -86.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds