Wall clock time and date at job start Mon Mar 30 2020 04:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47258 * 269.99859 * 3 2 1 5 5 H 1.48494 * 109.47193 * 30.00059 * 3 2 1 6 6 H 1.48504 * 109.47024 * 149.99756 * 3 2 1 7 7 C 1.37883 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.38276 * 119.93141 * 90.00102 * 10 9 7 12 12 C 1.38120 * 120.06780 * 179.97438 * 11 10 9 13 13 C 1.38829 * 119.93232 * 359.97438 * 12 11 10 14 14 N 1.40200 * 120.06439 * 179.97438 * 13 12 11 15 15 C 1.34765 * 124.17543 * 173.89599 * 14 13 12 16 16 O 1.21230 * 127.16104 * 359.97438 * 15 14 13 17 17 C 1.51586 * 105.68302 * 179.97438 * 15 14 13 18 18 N 1.47313 * 103.59480 * 359.97438 * 17 15 14 19 19 C 1.33791 * 124.17889 * 353.59956 * 14 13 12 20 20 O 1.21533 * 123.77158 * 0.03207 * 19 14 13 21 21 C 1.38821 * 119.86853 * 359.97438 * 13 12 11 22 22 C 1.38123 * 119.93295 * 0.02562 * 21 13 12 23 23 H 0.96999 * 119.99451 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46867 * 59.99212 * 9 7 2 25 25 H 1.09001 * 109.46689 * 300.00082 * 9 7 2 26 26 H 1.08011 * 119.96791 * 359.71906 * 11 10 9 27 27 H 1.08006 * 120.03478 * 179.97438 * 12 11 10 28 28 H 1.09003 * 110.60146 * 118.53129 * 17 15 14 29 29 H 1.09006 * 110.59856 * 241.31911 * 17 15 14 30 30 H 0.97001 * 126.69223 * 180.02562 * 18 17 15 31 31 H 1.07998 * 120.03419 * 180.02562 * 21 13 12 32 32 H 1.08002 * 119.96462 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6786 -4.1691 1.1989 12 6 3.5758 -5.2192 1.2022 13 6 4.0270 -5.7486 0.0007 14 7 4.9380 -6.8143 0.0008 15 6 5.3391 -7.4674 -1.1077 16 8 4.9932 -7.2529 -2.2496 17 6 6.3130 -8.5262 -0.6296 18 7 6.3515 -8.3276 0.8296 19 6 5.5209 -7.3047 1.1007 20 8 5.3201 -6.8760 2.2200 21 6 3.5743 -5.2207 -1.2008 22 6 2.6771 -4.1705 -1.1976 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.3301 -3.7544 2.1333 27 1 3.9259 -5.6282 2.1385 28 1 5.9449 -9.5232 -0.8718 29 1 7.2987 -8.3659 -1.0666 30 1 6.8761 -8.8335 1.4697 31 1 3.9232 -5.6308 -2.1370 32 1 2.3249 -3.7592 -2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905501402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:34 Heat of formation + Delta-G solvation = -8.857766 kcal Electronic energy + Delta-G solvation = -18552.952964 eV Core-core repulsion = 15479.685186 eV Total energy + Delta-G solvation = -3073.267778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.77603 -38.89355 -38.57370 -36.35655 -35.03711 -33.04198 -30.67672 -30.35091 -28.12983 -26.87897 -23.88697 -23.61501 -21.66361 -21.28854 -20.11721 -18.29914 -17.43761 -17.05022 -16.35469 -16.26943 -15.60036 -15.05882 -14.48417 -14.42923 -14.22188 -14.21580 -13.94942 -13.17063 -12.90498 -12.64728 -12.14811 -11.72651 -11.33878 -10.99930 -10.95583 -10.55442 -10.52970 -10.41969 -9.87431 -9.73954 -9.49448 -9.36995 -8.41769 -8.35364 -7.57370 -6.03358 -4.07304 1.31374 1.80437 1.99503 2.00779 2.84329 2.98224 3.31930 3.38057 3.42758 3.67700 4.36968 4.51367 4.54402 4.61386 5.00780 5.27833 5.31201 5.53521 5.59206 6.00826 6.02526 6.13883 6.42399 6.60811 6.63312 6.69085 7.09835 7.11282 7.17739 7.23965 7.49712 7.65517 7.83532 7.92230 7.92791 8.32028 8.97894 9.56584 11.06418 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.035824 B = 0.004451 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.405800 B = 6289.595152 C = 6516.461950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.046 3.954 10 C -0.033 4.033 11 C -0.109 4.109 12 C -0.131 4.131 13 C 0.086 3.914 14 N -0.510 5.510 15 C 0.515 3.485 16 O -0.457 6.457 17 C 0.065 3.935 18 N -0.729 5.729 19 C 0.700 3.300 20 O -0.527 6.527 21 C -0.133 4.133 22 C -0.109 4.109 23 H 0.262 0.738 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.126 0.874 27 H 0.151 0.849 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.442 0.558 31 H 0.141 0.859 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.551 -18.516 -0.698 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.033 4.033 11 C -0.128 4.128 12 C -0.150 4.150 13 C -0.004 4.004 14 N -0.248 5.248 15 C 0.302 3.698 16 O -0.327 6.327 17 C -0.063 4.063 18 N -0.395 5.395 19 C 0.401 3.599 20 O -0.400 6.400 21 C -0.153 4.153 22 C -0.128 4.128 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.144 0.856 27 H 0.168 0.832 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.287 0.713 31 H 0.158 0.842 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.055 -18.008 -0.742 21.683 hybrid contribution 0.770 0.692 0.213 1.057 sum 12.825 -17.316 -0.529 21.555 Atomic orbital electron populations 1.69957 1.06034 1.26836 1.50463 1.25005 0.94879 0.99248 0.95138 0.86530 0.79855 0.83121 0.78179 1.20580 1.21150 1.19792 1.21055 0.93081 0.89808 1.51085 0.92427 1.18388 0.92551 0.89524 0.98581 1.20864 0.95743 0.94796 0.91944 1.21033 0.97392 0.95674 0.98707 1.21574 0.98258 0.97770 0.97383 1.17574 0.95869 0.91035 0.95880 1.43616 1.40303 1.31712 1.09151 1.20928 0.81581 0.82577 0.84681 1.90756 1.56881 1.66671 1.18363 1.22467 1.01643 1.00511 0.81640 1.45409 1.48792 1.36738 1.08586 1.15833 0.79426 0.80568 0.84035 1.90917 1.65255 1.62753 1.21108 1.21293 0.99408 0.98019 0.96575 1.20969 0.97499 0.95574 0.98746 0.92827 0.95136 0.95099 0.85556 0.83199 0.85699 0.85709 0.71342 0.84151 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.46 9.09 -34.44 -0.31 -14.77 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.05 1.20 5.10 -29.04 -0.15 1.05 16 10 C -0.03 -0.73 5.07 -104.60 -0.53 -1.26 16 11 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 12 C -0.13 -2.45 9.25 -39.41 -0.36 -2.82 16 13 C 0.09 1.52 6.56 -83.59 -0.55 0.97 16 14 N -0.51 -7.25 2.83 -64.35 -0.18 -7.43 16 15 C 0.51 5.93 8.18 -10.55 -0.09 5.85 16 16 O -0.46 -6.45 15.06 5.60 0.08 -6.36 16 17 C 0.07 0.36 7.97 -4.31 -0.03 0.33 16 18 N -0.73 -5.20 6.58 -65.73 -0.43 -5.63 16 19 C 0.70 9.01 8.54 -88.02 -0.75 8.25 16 20 O -0.53 -8.53 14.66 5.34 0.08 -8.45 16 21 C -0.13 -2.44 9.32 -39.41 -0.37 -2.81 16 22 C -0.11 -2.21 9.69 -39.61 -0.38 -2.59 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.13 2.48 8.06 -52.48 -0.42 2.06 16 27 H 0.15 2.76 5.19 -52.48 -0.27 2.49 16 28 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.44 1.83 8.96 -40.82 -0.37 1.46 16 31 H 0.14 2.43 5.37 -52.49 -0.28 2.15 16 32 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 281.35 15.07 4.24 4.24 Total: -1.00 -33.86 281.35 -7.50 -41.36 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -2.99 Total: 0.19 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -4.01 Total: -8.85 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.12 Total: -38.83 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.16 Total: -14.81 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.86 -7.50 -41.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905501402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.505 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds