Wall clock time and date at job start Mon Mar 30 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47258 * 269.99859 * 3 2 1 5 5 H 1.48494 * 109.47193 * 30.00059 * 3 2 1 6 6 H 1.48504 * 109.47024 * 149.99756 * 3 2 1 7 7 C 1.37883 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.38276 * 119.93141 * 90.00102 * 10 9 7 12 12 C 1.38120 * 120.06780 * 179.97438 * 11 10 9 13 13 C 1.38829 * 119.93232 * 359.97438 * 12 11 10 14 14 N 1.40200 * 120.06439 * 179.97438 * 13 12 11 15 15 C 1.34765 * 124.17543 * 173.89599 * 14 13 12 16 16 O 1.21230 * 127.16104 * 359.97438 * 15 14 13 17 17 C 1.51586 * 105.68302 * 179.97438 * 15 14 13 18 18 N 1.47313 * 103.59480 * 359.97438 * 17 15 14 19 19 C 1.33791 * 124.17889 * 353.59956 * 14 13 12 20 20 O 1.21533 * 123.77158 * 0.03207 * 19 14 13 21 21 C 1.38821 * 119.86853 * 359.97438 * 13 12 11 22 22 C 1.38123 * 119.93295 * 0.02562 * 21 13 12 23 23 H 0.96999 * 119.99451 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46867 * 59.99212 * 9 7 2 25 25 H 1.09001 * 109.46689 * 300.00082 * 9 7 2 26 26 H 1.08011 * 119.96791 * 359.71906 * 11 10 9 27 27 H 1.08006 * 120.03478 * 179.97438 * 12 11 10 28 28 H 1.09003 * 110.60146 * 118.53129 * 17 15 14 29 29 H 1.09006 * 110.59856 * 241.31911 * 17 15 14 30 30 H 0.97001 * 126.69223 * 180.02562 * 18 17 15 31 31 H 1.07998 * 120.03419 * 180.02562 * 21 13 12 32 32 H 1.08002 * 119.96462 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6786 -4.1691 1.1989 12 6 3.5758 -5.2192 1.2022 13 6 4.0270 -5.7486 0.0007 14 7 4.9380 -6.8143 0.0008 15 6 5.3391 -7.4674 -1.1077 16 8 4.9932 -7.2529 -2.2496 17 6 6.3130 -8.5262 -0.6296 18 7 6.3515 -8.3276 0.8296 19 6 5.5209 -7.3047 1.1007 20 8 5.3201 -6.8760 2.2200 21 6 3.5743 -5.2207 -1.2008 22 6 2.6771 -4.1705 -1.1976 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.3301 -3.7544 2.1333 27 1 3.9259 -5.6282 2.1385 28 1 5.9449 -9.5232 -0.8718 29 1 7.2987 -8.3659 -1.0666 30 1 6.8761 -8.8335 1.4697 31 1 3.9232 -5.6308 -2.1370 32 1 2.3249 -3.7592 -2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905501402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:33 Heat of formation + Delta-G solvation = -32.579009 kcal Electronic energy + Delta-G solvation = -18553.981594 eV Core-core repulsion = 15479.685186 eV Total energy + Delta-G solvation = -3074.296408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.74005 -40.11421 -39.84035 -37.33710 -36.31329 -34.95957 -32.38149 -31.90256 -29.10069 -28.40629 -25.60111 -24.84074 -23.13957 -22.59456 -21.44603 -19.30647 -18.52805 -18.31829 -18.08475 -17.33087 -16.93427 -16.43789 -15.98061 -15.77043 -15.38250 -15.30911 -14.74750 -14.66595 -14.42089 -14.38594 -13.76765 -13.39920 -13.30496 -12.66147 -12.60244 -12.28658 -12.06681 -11.97446 -11.38652 -11.27829 -10.97848 -10.60433 -10.51828 -9.91461 -9.14498 -8.20467 -6.34115 0.18987 0.43122 0.57532 1.03284 1.39680 1.40732 1.52305 1.91039 2.21213 2.39708 2.89544 2.93268 3.10105 3.72326 4.00999 4.07784 4.14018 4.31548 4.32194 4.46407 4.53885 4.67408 5.06646 5.11314 5.23994 5.31799 5.33666 5.46817 5.73198 5.81457 5.98099 5.98905 6.04218 6.17841 6.32671 6.77876 7.02465 7.34362 8.88570 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.035824 B = 0.004451 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.405800 B = 6289.595152 C = 6516.461950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.056 3.944 10 C -0.063 4.063 11 C -0.114 4.114 12 C -0.132 4.132 13 C 0.100 3.900 14 N -0.524 5.524 15 C 0.505 3.495 16 O -0.487 6.487 17 C 0.083 3.917 18 N -0.698 5.698 19 C 0.692 3.308 20 O -0.569 6.569 21 C -0.131 4.131 22 C -0.112 4.112 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.125 0.875 27 H 0.157 0.843 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.459 0.541 31 H 0.155 0.845 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.413 -20.412 -1.195 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.019 3.981 10 C -0.063 4.063 11 C -0.132 4.132 12 C -0.152 4.152 13 C 0.009 3.991 14 N -0.262 5.262 15 C 0.296 3.704 16 O -0.358 6.358 17 C -0.042 4.042 18 N -0.365 5.365 19 C 0.393 3.607 20 O -0.445 6.445 21 C -0.150 4.150 22 C -0.131 4.131 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.142 0.858 27 H 0.174 0.826 28 H 0.186 0.814 29 H 0.185 0.815 30 H 0.308 0.692 31 H 0.172 0.828 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.972 -19.978 -1.251 24.997 hybrid contribution -0.059 1.118 0.333 1.168 sum 14.913 -18.859 -0.918 24.061 Atomic orbital electron populations 1.70075 1.07613 1.28001 1.51157 1.25902 0.95766 1.03017 0.94488 0.85442 0.78546 0.78442 0.78610 1.19574 1.20339 1.19231 1.21360 0.93054 0.91218 1.51210 0.92864 1.18123 0.92800 0.90811 0.96319 1.20551 0.97012 0.95211 0.93573 1.21035 0.97857 0.96296 0.98041 1.21624 0.97898 0.97301 0.98345 1.17655 0.95191 0.91208 0.95027 1.43853 1.40078 1.31218 1.11051 1.22043 0.81738 0.83007 0.83650 1.90738 1.58057 1.67655 1.19357 1.22796 1.01809 0.99873 0.79744 1.45313 1.46715 1.34433 1.10018 1.16028 0.80101 0.81567 0.83022 1.90883 1.66844 1.64348 1.22454 1.21367 0.98827 0.97331 0.97493 1.21000 0.97873 0.96140 0.98048 0.92492 0.97286 0.97412 0.85752 0.82560 0.81366 0.81490 0.69197 0.82792 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.01 0.38 5.46 84.66 0.46 0.85 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.53 -30.99 9.09 25.60 0.23 -30.76 16 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.06 3.10 5.10 29.10 0.15 3.24 16 10 C -0.06 -2.93 5.07 -19.85 -0.10 -3.03 16 11 C -0.11 -4.83 9.69 22.25 0.22 -4.62 16 12 C -0.13 -5.02 9.25 22.38 0.21 -4.81 16 13 C 0.10 3.50 6.56 38.08 0.25 3.75 16 14 N -0.52 -13.82 2.83 -594.76 -1.68 -15.50 16 15 C 0.50 10.00 8.18 87.94 0.72 10.72 16 16 O -0.49 -12.55 15.06 -2.87 -0.04 -12.59 16 17 C 0.08 0.45 7.97 85.76 0.68 1.13 16 18 N -0.70 -6.82 6.58 -480.30 -3.16 -9.98 16 19 C 0.69 16.10 8.54 179.44 1.53 17.63 16 20 O -0.57 -17.75 14.66 -3.82 -0.06 -17.81 16 21 C -0.13 -4.76 9.32 22.38 0.21 -4.55 16 22 C -0.11 -4.65 9.69 22.25 0.22 -4.44 16 23 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 24 H 0.01 0.51 8.08 -2.38 -0.02 0.49 16 25 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 26 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 27 H 0.16 5.80 5.19 -2.91 -0.02 5.78 16 28 H 0.17 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.17 -0.21 8.14 -2.38 -0.02 -0.23 16 30 H 0.46 1.60 8.96 -92.71 -0.83 0.77 16 31 H 0.15 5.21 5.37 -2.91 -0.02 5.19 16 32 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -77.34 281.35 2.48 -74.86 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.34 Total: 5.10 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.78 Total: -14.88 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -4.56 Total: -81.75 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.10 Total: -30.40 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -77.34 2.48 -74.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905501402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.280 kcal (2) G-P(sol) polarization free energy of solvation -77.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds