Wall clock time and date at job start Mon Mar 30 2020 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47306 * 299.99773 * 3 2 1 6 6 H 1.48498 * 109.47332 * 60.00120 * 3 2 1 7 7 C 1.38950 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00025 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99997 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99862 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99979 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46843 * 179.97438 * 12 10 9 14 14 C 1.39676 * 119.99959 * 179.97438 * 13 12 10 15 15 C 1.38935 * 120.10860 * 0.02562 * 14 13 12 16 16 C 1.37958 * 119.85363 * 179.97438 * 15 14 13 17 17 C 1.38573 * 120.32161 * 0.02562 * 16 15 14 18 18 C 1.38290 * 119.96514 * 359.97438 * 17 16 15 19 19 C 1.38376 * 119.92356 * 359.97438 * 18 17 16 20 20 C 1.51380 * 109.74964 * 179.97438 * 18 17 16 21 21 C 1.54336 * 105.17371 * 342.79918 * 20 18 17 22 22 C 1.51395 * 130.30393 * 179.97438 * 17 16 15 23 23 H 0.97000 * 119.99530 * 0.02562 * 1 2 3 24 24 H 0.97002 * 120.00232 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47683 * 59.99813 * 12 10 9 26 26 H 1.08997 * 109.47117 * 299.99345 * 12 10 9 27 27 H 0.96993 * 119.99849 * 0.02562 * 13 12 10 28 28 H 1.07993 * 120.07542 * 359.69069 * 15 14 13 29 29 H 1.08002 * 119.84259 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.92027 * 180.02562 * 19 18 17 31 31 H 1.08994 * 110.30482 * 101.72703 * 20 18 17 32 32 H 1.09001 * 110.30151 * 223.87584 * 20 18 17 33 33 H 1.09001 * 110.82193 * 268.15266 * 21 20 18 34 34 H 1.09000 * 110.99170 * 144.68401 * 21 20 18 35 35 H 1.09008 * 110.29413 * 316.17226 * 22 17 16 36 36 H 1.08993 * 110.30185 * 78.31590 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 6 1.7300 -7.2933 -0.0017 15 6 0.3646 -7.5498 -0.0018 16 6 -0.0895 -8.8525 -0.0024 17 6 0.8097 -9.9068 -0.0023 18 6 2.1695 -9.6549 -0.0022 19 6 2.6297 -8.3499 -0.0027 20 6 2.9320 -10.9626 -0.0015 21 6 1.9062 -12.0281 0.4393 22 6 0.5668 -11.4011 -0.0023 23 1 -0.4849 0.8401 -0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6173 -4.9205 -0.8913 26 1 0.6167 -4.9209 0.8886 27 1 3.1492 -5.7992 -0.0012 28 1 -0.3398 -6.7312 0.0032 29 1 -1.1510 -9.0516 -0.0029 30 1 3.6916 -8.1532 -0.0030 31 1 3.3022 -11.1851 -1.0022 32 1 3.7590 -10.9178 0.7072 33 1 1.9317 -12.1668 1.5201 34 1 2.0795 -12.9734 -0.0751 35 1 -0.2220 -11.6560 0.7056 36 1 0.3018 -11.7412 -1.0034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020048650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:48 Heat of formation + Delta-G solvation = -22.036643 kcal Electronic energy + Delta-G solvation = -18140.891056 eV Core-core repulsion = 15202.884893 eV Total energy + Delta-G solvation = -2938.006163 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98368 -38.49169 -36.59940 -34.21977 -33.38636 -31.44290 -31.09673 -28.46755 -27.71900 -25.90732 -24.18789 -22.64021 -20.76200 -20.23782 -19.32001 -18.08405 -17.07036 -16.13591 -15.66304 -15.24606 -14.90386 -14.75896 -14.41540 -14.31831 -13.63546 -13.29518 -13.03450 -12.93068 -12.87263 -12.18391 -12.12641 -11.79739 -11.61953 -11.30304 -11.20597 -11.17810 -10.99403 -10.56905 -10.42054 -10.33272 -9.67158 -9.54773 -8.63284 -8.55469 -8.11730 -7.04382 -6.53364 -3.95063 1.59542 1.78871 3.09145 3.21304 3.27997 3.65768 3.72426 4.00978 4.11946 4.51934 4.61066 4.86479 4.91140 5.14516 5.14951 5.21926 5.33862 5.55422 5.62075 5.65654 5.68914 5.73543 5.74721 5.90141 5.92866 5.99242 6.07995 6.14275 6.28807 6.54485 6.62214 6.88551 7.04633 7.44843 7.59866 7.92526 8.13234 8.44361 9.03739 9.37832 9.86264 10.63778 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.062562 B = 0.003221 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.449778 B = 8690.024303 C = 9098.378626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.430 3.570 11 O -0.595 6.595 12 C 0.114 3.886 13 N -0.725 5.725 14 C 0.230 3.770 15 C -0.203 4.203 16 C -0.057 4.057 17 C -0.172 4.172 18 C -0.051 4.051 19 C -0.189 4.189 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.071 4.071 23 H 0.273 0.727 24 H 0.395 0.605 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.410 0.590 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -18.954 0.102 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.215 3.785 11 O -0.481 6.481 12 C -0.015 4.015 13 N -0.356 5.356 14 C 0.125 3.875 15 C -0.226 4.226 16 C -0.075 4.075 17 C -0.174 4.174 18 C -0.052 4.052 19 C -0.212 4.212 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.108 4.108 23 H 0.083 0.917 24 H 0.229 0.771 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.249 0.751 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.732 -18.582 0.102 18.597 hybrid contribution 0.030 1.128 -0.016 1.129 sum -0.702 -17.454 0.087 17.468 Atomic orbital electron populations 1.69618 1.06005 1.28396 1.49638 1.25316 0.95675 0.99917 0.96835 0.85761 0.79712 0.80814 0.77837 1.19135 1.20596 1.20590 1.19777 0.93489 0.82025 1.48034 0.87688 1.41808 1.09393 1.04508 1.62954 1.19758 0.88341 0.84974 0.85403 1.90504 1.13819 1.86798 1.56956 1.20929 0.92181 0.86476 1.01899 1.44496 1.09605 1.01033 1.80418 1.17690 0.92727 0.84404 0.92727 1.20566 0.93605 0.96971 1.11490 1.20287 0.98569 0.91188 0.97494 1.20218 0.93723 0.94754 1.08750 1.20189 0.94625 0.93270 0.97067 1.19945 0.98730 0.90556 1.11992 1.21032 0.97789 0.91330 1.01757 1.22270 0.94630 0.97675 1.01195 1.20862 0.97580 0.91236 1.01103 0.91664 0.77134 0.90694 0.90702 0.75128 0.85902 0.86720 0.86567 0.90427 0.90977 0.91221 0.91006 0.91550 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 13.05 55.50 0.72 -23.11 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 10 C 0.43 9.94 7.85 -10.98 -0.09 9.86 16 11 O -0.59 -15.71 15.24 5.55 0.08 -15.62 16 12 C 0.11 2.02 5.39 -5.19 -0.03 2.00 16 13 N -0.73 -12.53 5.70 -59.84 -0.34 -12.87 16 14 C 0.23 3.62 6.65 -83.83 -0.56 3.06 16 15 C -0.20 -2.93 9.31 -39.43 -0.37 -3.30 16 16 C -0.06 -0.73 10.03 -39.56 -0.40 -1.13 16 17 C -0.17 -2.17 6.14 -104.14 -0.64 -2.81 16 18 C -0.05 -0.66 6.13 -104.22 -0.64 -1.30 16 19 C -0.19 -2.75 9.89 -39.33 -0.39 -3.14 16 20 C -0.08 -0.81 6.77 -26.85 -0.18 -1.00 16 21 C -0.12 -1.01 7.08 -25.33 -0.18 -1.19 16 22 C -0.07 -0.68 6.77 -26.84 -0.18 -0.86 16 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.40 9.28 7.90 -40.82 -0.32 8.96 16 25 H 0.08 1.22 7.96 -51.93 -0.41 0.81 16 26 H 0.08 1.22 7.95 -51.93 -0.41 0.80 16 27 H 0.41 7.52 7.45 -40.82 -0.30 7.21 16 28 H 0.12 1.65 6.74 -52.49 -0.35 1.29 16 29 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -29.91 305.78 -8.59 -38.50 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -4.70 Total: 14.34 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.89 Total: -7.71 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.32 Total: -49.70 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.08 Total: -15.62 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.91 -8.59 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020048650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.466 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds