Wall clock time and date at job start Mon Mar 30 2020 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47306 * 299.99773 * 3 2 1 6 6 H 1.48498 * 109.47332 * 60.00120 * 3 2 1 7 7 C 1.38950 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00025 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99997 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99862 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99979 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46843 * 179.97438 * 12 10 9 14 14 C 1.39676 * 119.99959 * 179.97438 * 13 12 10 15 15 C 1.38935 * 120.10860 * 0.02562 * 14 13 12 16 16 C 1.37958 * 119.85363 * 179.97438 * 15 14 13 17 17 C 1.38573 * 120.32161 * 0.02562 * 16 15 14 18 18 C 1.38290 * 119.96514 * 359.97438 * 17 16 15 19 19 C 1.38376 * 119.92356 * 359.97438 * 18 17 16 20 20 C 1.51380 * 109.74964 * 179.97438 * 18 17 16 21 21 C 1.54336 * 105.17371 * 342.79918 * 20 18 17 22 22 C 1.51395 * 130.30393 * 179.97438 * 17 16 15 23 23 H 0.97000 * 119.99530 * 0.02562 * 1 2 3 24 24 H 0.97002 * 120.00232 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47683 * 59.99813 * 12 10 9 26 26 H 1.08997 * 109.47117 * 299.99345 * 12 10 9 27 27 H 0.96993 * 119.99849 * 0.02562 * 13 12 10 28 28 H 1.07993 * 120.07542 * 359.69069 * 15 14 13 29 29 H 1.08002 * 119.84259 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.92027 * 180.02562 * 19 18 17 31 31 H 1.08994 * 110.30482 * 101.72703 * 20 18 17 32 32 H 1.09001 * 110.30151 * 223.87584 * 20 18 17 33 33 H 1.09001 * 110.82193 * 268.15266 * 21 20 18 34 34 H 1.09000 * 110.99170 * 144.68401 * 21 20 18 35 35 H 1.09008 * 110.29413 * 316.17226 * 22 17 16 36 36 H 1.08993 * 110.30185 * 78.31590 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 6 1.7300 -7.2933 -0.0017 15 6 0.3646 -7.5498 -0.0018 16 6 -0.0895 -8.8525 -0.0024 17 6 0.8097 -9.9068 -0.0023 18 6 2.1695 -9.6549 -0.0022 19 6 2.6297 -8.3499 -0.0027 20 6 2.9320 -10.9626 -0.0015 21 6 1.9062 -12.0281 0.4393 22 6 0.5668 -11.4011 -0.0023 23 1 -0.4849 0.8401 -0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6173 -4.9205 -0.8913 26 1 0.6167 -4.9209 0.8886 27 1 3.1492 -5.7992 -0.0012 28 1 -0.3398 -6.7312 0.0032 29 1 -1.1510 -9.0516 -0.0029 30 1 3.6916 -8.1532 -0.0030 31 1 3.3022 -11.1851 -1.0022 32 1 3.7590 -10.9178 0.7072 33 1 1.9317 -12.1668 1.5201 34 1 2.0795 -12.9734 -0.0751 35 1 -0.2220 -11.6560 0.7056 36 1 0.3018 -11.7412 -1.0034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020048650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:48 Heat of formation + Delta-G solvation = -40.395244 kcal Electronic energy + Delta-G solvation = -18141.687144 eV Core-core repulsion = 15202.884893 eV Total energy + Delta-G solvation = -2938.802251 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03178 -40.24602 -37.75924 -36.11318 -34.59668 -33.39745 -32.17421 -29.69738 -28.70475 -27.34139 -25.82682 -23.64090 -21.61509 -21.56263 -20.84056 -20.02677 -18.52820 -17.29148 -17.06214 -16.44900 -16.33050 -16.20684 -16.00260 -15.66944 -15.08742 -14.49089 -14.39460 -14.17735 -13.70891 -13.59002 -13.55489 -13.33645 -12.94442 -12.64760 -12.47567 -12.23098 -12.13315 -11.92644 -11.84189 -11.60481 -11.54129 -10.63763 -10.56843 -10.11805 -9.58427 -8.53867 -8.21561 -6.03762 0.54850 0.72488 1.32970 1.40673 1.54517 1.89431 2.19181 2.42324 2.95408 3.13412 3.15050 3.66266 3.80641 4.15202 4.20474 4.26362 4.27215 4.39412 4.46386 4.51064 4.57758 4.73469 4.85026 4.95639 5.03471 5.11122 5.17067 5.32096 5.35528 5.41186 5.51307 5.58724 5.86007 5.87678 6.02028 6.40143 6.49969 6.78329 7.02192 7.42399 7.94555 8.63302 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.062562 B = 0.003221 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.449778 B = 8690.024303 C = 9098.378626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.081 0.919 9 N -0.560 5.560 10 C 0.429 3.571 11 O -0.631 6.631 12 C 0.130 3.870 13 N -0.737 5.737 14 C 0.207 3.793 15 C -0.214 4.214 16 C -0.063 4.063 17 C -0.175 4.175 18 C -0.063 4.063 19 C -0.204 4.204 20 C -0.084 4.084 21 C -0.115 4.115 22 C -0.071 4.071 23 H 0.280 0.720 24 H 0.400 0.600 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.402 0.598 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -20.514 0.095 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.099 0.901 9 N -0.195 5.195 10 C 0.217 3.783 11 O -0.519 6.519 12 C 0.002 3.998 13 N -0.368 5.368 14 C 0.103 3.897 15 C -0.236 4.236 16 C -0.081 4.081 17 C -0.177 4.177 18 C -0.064 4.064 19 C -0.227 4.227 20 C -0.121 4.121 21 C -0.152 4.152 22 C -0.108 4.108 23 H 0.090 0.910 24 H 0.235 0.765 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.238 0.762 28 H 0.148 0.852 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.723 -20.183 0.096 20.256 hybrid contribution 0.316 1.480 -0.018 1.514 sum -1.408 -18.702 0.079 18.755 Atomic orbital electron populations 1.69670 1.06865 1.29592 1.49330 1.26090 0.96572 1.02531 0.95762 0.84839 0.78008 0.76831 0.78466 1.19777 1.19441 1.19430 1.19727 0.92817 0.83763 1.50485 0.90102 1.41840 1.09565 1.04527 1.63611 1.20648 0.88168 0.86259 0.83255 1.90474 1.15765 1.87663 1.57994 1.20788 0.91701 0.83677 1.03616 1.44442 1.08871 1.01537 1.81976 1.17893 0.93643 0.83740 0.94395 1.20766 0.93132 0.98091 1.11628 1.20608 1.00041 0.90692 0.96786 1.20736 0.93479 0.96581 1.06887 1.20632 0.95729 0.93744 0.96246 1.20124 0.98757 0.91311 1.12477 1.21145 0.98207 0.90132 1.02598 1.22304 0.93160 0.97982 1.01755 1.20966 0.98693 0.88904 1.02248 0.91000 0.76546 0.88821 0.88828 0.76167 0.85247 0.84322 0.86672 0.89486 0.90427 0.90822 0.88683 0.90265 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.36 13.05 21.66 0.28 -48.08 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 1.00 42.17 29.55 68.60 2.03 44.19 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.97 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.56 -28.32 5.29 -306.98 -1.62 -29.94 16 10 C 0.43 20.33 7.85 87.66 0.69 21.02 16 11 O -0.63 -34.52 15.24 -3.07 -0.05 -34.56 16 12 C 0.13 4.64 5.39 85.63 0.46 5.10 16 13 N -0.74 -25.90 5.70 -343.23 -1.96 -27.85 16 14 C 0.21 6.49 6.65 38.19 0.25 6.75 16 15 C -0.21 -5.95 9.31 22.37 0.21 -5.74 16 16 C -0.06 -1.51 10.03 22.28 0.22 -1.28 16 17 C -0.17 -4.03 6.14 -19.55 -0.12 -4.15 16 18 C -0.06 -1.56 6.13 -19.60 -0.12 -1.68 16 19 C -0.20 -5.94 9.89 22.43 0.22 -5.72 16 20 C -0.08 -1.48 6.77 30.52 0.21 -1.27 16 21 C -0.11 -1.56 7.08 31.50 0.22 -1.33 16 22 C -0.07 -1.13 6.77 30.53 0.21 -0.93 16 23 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 24 H 0.40 19.05 7.90 -92.71 -0.73 18.31 16 25 H 0.09 2.98 7.96 -2.39 -0.02 2.96 16 26 H 0.09 2.98 7.95 -2.39 -0.02 2.96 16 27 H 0.40 15.33 7.45 -92.71 -0.69 14.64 16 28 H 0.13 3.31 6.74 -2.91 -0.02 3.29 16 29 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -64.77 305.78 2.10 -62.67 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.31 Total: 40.98 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 3.73 Total: -7.40 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.30 Total: -105.88 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.05 Total: -34.56 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.77 2.10 -62.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020048650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.276 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds