Wall clock time and date at job start Mon Mar 30 2020 04:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38303 * 119.96830 * 2 1 4 4 C 1.38248 * 120.13220 * 179.97438 * 3 2 1 5 5 C 1.38149 * 120.06858 * 359.76454 * 4 3 2 6 6 C 1.38814 * 119.92763 * 0.48890 * 5 4 3 7 7 N 1.40181 * 120.06002 * 179.76295 * 6 5 4 8 8 C 1.34764 * 124.18346 * 5.85834 * 7 6 5 9 9 O 1.21249 * 127.15365 * 359.97438 * 8 7 6 10 10 C 1.51578 * 105.68926 * 179.74429 * 8 7 6 11 11 N 1.47315 * 103.58838 * 0.33322 * 10 8 7 12 12 C 1.37135 * 126.68895 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00407 * 184.71769 * 12 11 10 14 14 C 1.38911 * 119.99670 * 4.44303 * 12 11 10 15 15 N 1.31448 * 120.00229 * 355.18633 * 14 12 11 16 16 Si 1.86808 * 119.99904 * 175.18364 * 14 12 11 17 17 H 1.48496 * 109.47043 * 89.99709 * 16 14 12 18 18 H 1.48496 * 109.47116 * 210.00017 * 16 14 12 19 19 H 1.48504 * 109.46788 * 330.00147 * 16 14 12 20 20 C 1.33797 * 124.17298 * 185.81905 * 7 6 5 21 21 O 1.21540 * 123.77366 * 0.02897 * 20 7 6 22 22 C 1.38095 * 119.96403 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47241 * 270.02209 * 1 2 3 24 24 H 1.09003 * 109.46786 * 30.01508 * 1 2 3 25 25 H 1.08992 * 109.47306 * 150.01626 * 1 2 3 26 26 H 1.08005 * 119.93115 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.96905 * 180.02562 * 4 3 2 28 28 H 1.07996 * 120.03279 * 180.25479 * 5 4 3 29 29 H 1.08991 * 110.69340 * 241.76486 * 10 8 7 30 30 H 1.08999 * 110.51069 * 118.81064 * 10 8 7 31 31 H 0.97002 * 120.00141 * 180.02562 * 15 14 12 32 32 H 1.07995 * 120.03788 * 359.96839 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5803 1.2021 0.0005 5 6 4.2759 0.0085 0.0060 6 6 3.5853 -1.1956 0.0007 7 7 4.2883 -2.4084 0.0011 8 6 5.6270 -2.5075 0.1203 9 8 6.4206 -1.5989 0.2423 10 6 5.9338 -3.9912 0.0760 11 7 4.6086 -4.6140 -0.0857 12 6 4.3396 -5.9554 -0.1800 13 1 3.3318 -6.2918 -0.3734 14 6 5.3646 -6.8812 -0.0324 15 7 6.6062 -6.4713 0.1030 16 14 4.9785 -8.7090 -0.0264 17 1 5.0407 -9.2326 -1.4146 18 1 5.9717 -9.4219 0.8166 19 1 3.6162 -8.9253 0.5236 20 6 3.7130 -3.6106 -0.1159 21 8 2.5151 -3.7776 -0.2360 22 6 2.1967 -1.1964 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8899 -0.5141 25 1 -0.3633 -0.8900 -0.5135 26 1 1.6562 2.1325 0.0004 27 1 4.1172 2.1392 0.0010 28 1 5.3559 0.0123 0.0106 29 1 6.3992 -4.3162 1.0064 30 1 6.5732 -4.2238 -0.7756 31 1 7.3219 -7.1179 0.2057 32 1 1.6568 -2.1317 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026331115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:35 Heat of formation + Delta-G solvation = -3.856364 kcal Electronic energy + Delta-G solvation = -19159.636989 eV Core-core repulsion = 16086.586088 eV Total energy + Delta-G solvation = -3073.050901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78702 -38.73706 -37.84195 -35.37097 -34.76602 -32.60380 -31.90175 -29.66383 -27.45679 -26.66678 -25.13127 -22.76473 -22.39745 -20.69554 -19.41423 -17.93978 -16.68101 -16.37437 -15.96856 -15.90903 -15.24896 -14.48754 -14.33308 -13.78673 -13.62410 -13.61691 -13.34268 -13.00934 -12.77490 -12.67121 -12.07030 -11.78939 -11.73205 -11.64842 -11.19991 -10.96289 -10.72615 -10.53110 -10.22830 -9.58668 -9.51354 -8.97111 -8.44528 -8.31514 -7.84789 -6.67012 -4.15801 1.51549 1.68916 2.43027 2.93433 3.05180 3.12474 3.19561 3.75209 3.87076 4.24624 4.40690 4.94872 5.05522 5.07326 5.13181 5.39289 5.48894 5.67248 5.75696 5.79255 5.88268 6.07178 6.08276 6.30583 6.43380 6.56358 6.67153 6.73072 6.89810 6.96861 7.22479 7.35675 7.79861 7.97400 8.21394 8.72113 8.92885 9.54968 10.42723 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.005971 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.279405 B = 4688.224520 C = 5524.700248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.103 4.103 5 C -0.155 4.155 6 C 0.158 3.842 7 N -0.519 5.519 8 C 0.499 3.501 9 O -0.494 6.494 10 C 0.099 3.901 11 N -0.436 5.436 12 C -0.286 4.286 13 H 0.115 0.885 14 C 0.031 3.969 15 N -0.888 5.888 16 Si 0.943 3.057 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.620 3.380 21 O -0.581 6.581 22 C -0.138 4.138 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.277 0.723 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 8.416 0.228 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.163 4.163 4 C -0.121 4.121 5 C -0.175 4.175 6 C 0.065 3.935 7 N -0.255 5.255 8 C 0.290 3.710 9 O -0.368 6.368 10 C -0.027 4.027 11 N -0.158 5.158 12 C -0.412 4.412 13 H 0.132 0.868 14 C -0.173 4.173 15 N -0.528 5.528 16 Si 0.769 3.231 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.191 1.191 20 C 0.324 3.676 21 O -0.462 6.462 22 C -0.158 4.158 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.088 0.912 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.851 8.496 0.244 9.331 hybrid contribution 0.185 -0.804 0.006 0.825 sum -3.666 7.692 0.251 8.525 Atomic orbital electron populations 1.20745 0.91151 1.02592 1.02150 1.19788 0.96025 0.92523 0.99364 1.20981 0.94245 0.97279 1.03778 1.20887 0.93992 0.97205 1.00062 1.21503 1.02088 0.90563 1.03388 1.17866 0.91579 0.83711 1.00333 1.43929 1.09465 1.06983 1.65129 1.22005 0.81038 0.93665 0.74312 1.90593 1.52400 1.45843 1.47930 1.22380 0.88941 0.83951 1.07406 1.43256 1.03794 1.04898 1.63809 1.19576 0.97033 0.76516 1.48096 0.86753 1.25350 0.94541 1.01300 0.96105 1.69775 0.99323 1.35899 1.47756 0.85645 0.78677 0.80258 0.78545 1.20014 1.20479 1.19100 1.15675 0.86035 0.79625 0.86258 1.90631 1.12113 1.82803 1.60695 1.21813 0.92431 1.00548 1.01001 0.91346 0.91837 0.91298 0.86446 0.85906 0.83303 0.85350 0.85707 0.91237 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.08 -1.19 5.88 -104.65 -0.62 -1.80 16 3 C -0.14 -2.02 9.70 -39.55 -0.38 -2.40 16 4 C -0.10 -1.52 10.04 -39.61 -0.40 -1.91 16 5 C -0.16 -2.78 9.32 -39.40 -0.37 -3.15 16 6 C 0.16 3.19 6.56 -83.60 -0.55 2.64 16 7 N -0.52 -11.40 2.83 -64.35 -0.18 -11.58 16 8 C 0.50 10.59 8.18 -10.56 -0.09 10.50 16 9 O -0.49 -10.51 15.06 5.58 0.08 -10.42 16 10 C 0.10 2.18 5.62 -4.32 -0.02 2.15 16 11 N -0.44 -10.73 3.12 -120.74 -0.38 -11.11 16 12 C -0.29 -7.28 10.04 -14.93 -0.15 -7.43 16 13 H 0.11 2.94 7.77 -52.49 -0.41 2.54 16 14 C 0.03 0.73 5.49 -17.47 -0.10 0.63 16 15 N -0.89 -21.42 10.58 55.49 0.59 -20.83 16 16 Si 0.94 18.91 29.56 -169.99 -5.02 13.89 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 C 0.62 15.13 8.17 -88.02 -0.72 14.41 16 21 O -0.58 -15.08 14.32 5.33 0.08 -15.00 16 22 C -0.14 -2.64 8.91 -39.41 -0.35 -2.99 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 26 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.15 2.76 5.36 -52.49 -0.28 2.48 16 29 H 0.13 2.83 7.48 -51.93 -0.39 2.44 16 30 H 0.13 2.73 7.70 -51.93 -0.40 2.33 16 31 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 32 H 0.17 3.48 5.19 -52.49 -0.27 3.21 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -27.48 276.92 -7.03 -34.51 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -2.99 Total: 6.69 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -3.38 Total: 9.68 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.03 Total: -43.52 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.16 Total: -25.43 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.48 -7.03 -34.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026331115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.654 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds