Wall clock time and date at job start Mon Mar 30 2020 04:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38303 * 119.96830 * 2 1 4 4 C 1.38248 * 120.13220 * 179.97438 * 3 2 1 5 5 C 1.38149 * 120.06858 * 359.76454 * 4 3 2 6 6 C 1.38814 * 119.92763 * 0.48890 * 5 4 3 7 7 N 1.40181 * 120.06002 * 179.76295 * 6 5 4 8 8 C 1.34764 * 124.18346 * 5.85834 * 7 6 5 9 9 O 1.21249 * 127.15365 * 359.97438 * 8 7 6 10 10 C 1.51578 * 105.68926 * 179.74429 * 8 7 6 11 11 N 1.47315 * 103.58838 * 0.33322 * 10 8 7 12 12 C 1.37135 * 126.68895 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00407 * 184.71769 * 12 11 10 14 14 C 1.38911 * 119.99670 * 4.44303 * 12 11 10 15 15 N 1.31448 * 120.00229 * 355.18633 * 14 12 11 16 16 Si 1.86808 * 119.99904 * 175.18364 * 14 12 11 17 17 H 1.48496 * 109.47043 * 89.99709 * 16 14 12 18 18 H 1.48496 * 109.47116 * 210.00017 * 16 14 12 19 19 H 1.48504 * 109.46788 * 330.00147 * 16 14 12 20 20 C 1.33797 * 124.17298 * 185.81905 * 7 6 5 21 21 O 1.21540 * 123.77366 * 0.02897 * 20 7 6 22 22 C 1.38095 * 119.96403 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47241 * 270.02209 * 1 2 3 24 24 H 1.09003 * 109.46786 * 30.01508 * 1 2 3 25 25 H 1.08992 * 109.47306 * 150.01626 * 1 2 3 26 26 H 1.08005 * 119.93115 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.96905 * 180.02562 * 4 3 2 28 28 H 1.07996 * 120.03279 * 180.25479 * 5 4 3 29 29 H 1.08991 * 110.69340 * 241.76486 * 10 8 7 30 30 H 1.08999 * 110.51069 * 118.81064 * 10 8 7 31 31 H 0.97002 * 120.00141 * 180.02562 * 15 14 12 32 32 H 1.07995 * 120.03788 * 359.96839 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5803 1.2021 0.0005 5 6 4.2759 0.0085 0.0060 6 6 3.5853 -1.1956 0.0007 7 7 4.2883 -2.4084 0.0011 8 6 5.6270 -2.5075 0.1203 9 8 6.4206 -1.5989 0.2423 10 6 5.9338 -3.9912 0.0760 11 7 4.6086 -4.6140 -0.0857 12 6 4.3396 -5.9554 -0.1800 13 1 3.3318 -6.2918 -0.3734 14 6 5.3646 -6.8812 -0.0324 15 7 6.6062 -6.4713 0.1030 16 14 4.9785 -8.7090 -0.0264 17 1 5.0407 -9.2326 -1.4146 18 1 5.9717 -9.4219 0.8166 19 1 3.6162 -8.9253 0.5236 20 6 3.7130 -3.6106 -0.1159 21 8 2.5151 -3.7776 -0.2360 22 6 2.1967 -1.1964 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8899 -0.5141 25 1 -0.3633 -0.8900 -0.5135 26 1 1.6562 2.1325 0.0004 27 1 4.1172 2.1392 0.0010 28 1 5.3559 0.0123 0.0106 29 1 6.3992 -4.3162 1.0064 30 1 6.5732 -4.2238 -0.7756 31 1 7.3219 -7.1179 0.2057 32 1 1.6568 -2.1317 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026331115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:35 Heat of formation + Delta-G solvation = -18.527075 kcal Electronic energy + Delta-G solvation = -19160.273159 eV Core-core repulsion = 16086.586088 eV Total energy + Delta-G solvation = -3073.687071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.52573 -40.09997 -39.61211 -37.21980 -36.48230 -34.21922 -33.29396 -31.18542 -29.17134 -27.87104 -26.97116 -24.26932 -23.95705 -22.21681 -21.01239 -19.76650 -18.28372 -18.15162 -17.70444 -17.28673 -16.97515 -16.09466 -15.78594 -15.53854 -15.18279 -15.06766 -14.89466 -14.65043 -14.29238 -14.00275 -13.50590 -13.21718 -13.14341 -12.91931 -12.83156 -12.56518 -12.25815 -12.10009 -11.74436 -11.36549 -11.22389 -10.77139 -10.21429 -9.72011 -9.27315 -8.52981 -6.10659 0.13662 0.39298 0.70722 1.25791 1.45354 1.48564 1.61288 2.06392 2.17435 2.62156 2.81807 3.07209 3.29094 3.78641 3.97031 4.12337 4.24236 4.33743 4.42107 4.50131 4.57813 4.76801 4.85158 4.91070 4.97527 5.25201 5.27136 5.29338 5.43611 5.47313 5.65364 5.99299 6.06777 6.17453 6.44386 6.82098 7.03758 7.65516 8.56363 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.005971 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.279405 B = 4688.224520 C = 5524.700248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.128 4.128 4 C -0.092 4.092 5 C -0.167 4.167 6 C 0.118 3.882 7 N -0.518 5.518 8 C 0.507 3.493 9 O -0.494 6.494 10 C 0.109 3.891 11 N -0.447 5.447 12 C -0.324 4.324 13 H 0.100 0.900 14 C 0.003 3.997 15 N -0.900 5.900 16 Si 1.009 2.991 17 H -0.268 1.268 18 H -0.269 1.269 19 H -0.268 1.268 20 C 0.612 3.388 21 O -0.606 6.606 22 C -0.163 4.163 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.284 0.716 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 10.027 0.328 10.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.187 4.187 6 C 0.027 3.973 7 N -0.254 5.254 8 C 0.297 3.703 9 O -0.368 6.368 10 C -0.017 4.017 11 N -0.169 5.169 12 C -0.449 4.449 13 H 0.118 0.882 14 C -0.200 4.200 15 N -0.538 5.538 16 Si 0.831 3.169 17 H -0.193 1.193 18 H -0.194 1.194 19 H -0.193 1.193 20 C 0.316 3.684 21 O -0.490 6.490 22 C -0.183 4.183 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.181 0.819 27 H 0.179 0.821 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.095 0.905 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.218 10.149 0.345 10.996 hybrid contribution 0.278 -1.192 -0.024 1.224 sum -3.940 8.957 0.322 9.790 Atomic orbital electron populations 1.20825 0.88689 1.03662 1.03329 1.20209 0.97866 0.91798 0.97671 1.21477 0.94081 0.98245 1.00860 1.21352 0.94663 0.97291 0.97725 1.21554 1.01773 0.90955 1.04415 1.18263 0.92276 0.83566 1.03226 1.43819 1.09534 1.07039 1.65013 1.21752 0.80962 0.93244 0.74329 1.90587 1.52313 1.45682 1.48211 1.22280 0.87843 0.84404 1.07127 1.43446 1.04743 1.04998 1.63702 1.19681 0.97194 0.77375 1.50676 0.88174 1.26168 0.94120 1.04991 0.94703 1.69836 0.99848 1.37428 1.46648 0.84685 0.78437 0.74984 0.78793 1.19324 1.19396 1.19296 1.15868 0.85877 0.80377 0.86250 1.90604 1.13110 1.83525 1.61769 1.21702 0.92172 1.01076 1.03341 0.89992 0.88698 0.92327 0.81907 0.82065 0.84271 0.85586 0.85818 0.90529 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 10.01 71.24 0.71 -1.65 16 2 C -0.07 -2.18 5.88 -19.88 -0.12 -2.30 16 3 C -0.13 -3.07 9.70 22.29 0.22 -2.85 16 4 C -0.09 -2.41 10.04 22.25 0.22 -2.19 16 5 C -0.17 -5.86 9.32 22.39 0.21 -5.65 16 6 C 0.12 4.87 6.56 38.09 0.25 5.12 16 7 N -0.52 -23.71 2.83 -594.75 -1.68 -25.39 16 8 C 0.51 22.14 8.18 87.94 0.72 22.86 16 9 O -0.49 -21.25 15.06 -2.93 -0.04 -21.29 16 10 C 0.11 4.95 5.62 85.76 0.48 5.43 16 11 N -0.45 -22.97 3.12 -654.35 -2.04 -25.01 16 12 C -0.32 -17.04 10.04 84.03 0.84 -16.20 16 13 H 0.10 5.41 7.77 -2.91 -0.02 5.39 16 14 C 0.00 0.12 5.49 84.91 0.47 0.59 16 15 N -0.90 -43.35 10.58 21.66 0.23 -43.12 16 16 Si 1.01 38.52 29.56 68.60 2.03 40.55 16 17 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 18 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 20 C 0.61 31.45 8.17 179.44 1.47 32.92 16 21 O -0.61 -33.40 14.32 -3.84 -0.05 -33.46 16 22 C -0.16 -6.37 8.91 22.38 0.20 -6.17 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 25 H 0.06 1.40 8.08 -2.39 -0.02 1.38 16 26 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 27 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.14 5.11 5.36 -2.91 -0.02 5.09 16 29 H 0.13 5.73 7.48 -2.39 -0.02 5.71 16 30 H 0.12 5.58 7.70 -2.39 -0.02 5.56 16 31 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 32 H 0.14 6.11 5.19 -2.91 -0.02 6.09 16 Total: -1.00 -61.33 276.92 5.26 -56.08 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 1.16 Total: 21.74 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 5.67 Total: 29.92 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.50 Total: -93.53 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.10 Total: -54.75 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -61.33 5.26 -56.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026331115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.549 kcal (2) G-P(sol) polarization free energy of solvation -61.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds