Wall clock time and date at job start Mon Mar 30 2020 04:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30075 * 124.98379 * 2 1 4 4 C 1.35969 * 109.74690 * 180.02562 * 3 2 1 5 5 C 1.39683 * 133.41422 * 179.97438 * 4 3 2 6 6 C 1.38211 * 119.95435 * 180.02562 * 5 4 3 7 7 C 1.39488 * 120.26191 * 359.91496 * 6 5 4 8 8 C 1.38445 * 120.19787 * 0.12469 * 7 6 5 9 9 C 1.38705 * 120.00775 * 359.91484 * 8 7 6 10 10 N 1.36593 * 124.98876 * 180.02562 * 2 1 3 11 11 C 1.37286 * 126.40585 * 359.96174 * 10 2 1 12 12 H 1.08007 * 120.00166 * 326.25024 * 11 10 2 13 13 C 1.38887 * 120.00125 * 146.25132 * 11 10 2 14 14 N 1.31402 * 120.00036 * 340.18316 * 13 11 10 15 15 Si 1.86802 * 120.00166 * 160.18280 * 13 11 10 16 16 H 1.48507 * 109.46727 * 90.00085 * 15 13 11 17 17 H 1.48495 * 109.47347 * 209.99837 * 15 13 11 18 18 H 1.48497 * 109.47088 * 330.00264 * 15 13 11 19 19 O 1.36193 * 120.69732 * 180.17819 * 7 6 5 20 20 C 1.43150 * 116.72593 * 342.80890 * 19 7 6 21 21 C 1.53467 * 108.24934 * 46.30071 * 20 19 7 22 22 O 1.36225 * 119.07333 * 179.82703 * 6 5 4 23 23 H 1.08999 * 109.47024 * 267.04017 * 1 2 3 24 24 H 1.09002 * 109.47101 * 27.04280 * 1 2 3 25 25 H 1.09002 * 109.46568 * 147.04119 * 1 2 3 26 26 H 1.08006 * 120.02446 * 0.03813 * 5 4 3 27 27 H 1.08003 * 119.99751 * 179.97438 * 8 7 6 28 28 H 0.97000 * 120.00104 * 185.17808 * 14 13 11 29 29 H 1.08999 * 109.70959 * 165.99224 * 20 19 7 30 30 H 1.09000 * 109.71580 * 286.61647 * 20 19 7 31 31 H 1.09004 * 109.71000 * 180.35307 * 21 20 19 32 32 H 1.09002 * 109.73675 * 59.75765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2528 1.0657 0.0000 4 6 3.5647 0.7084 -0.0006 5 6 4.7576 1.4351 -0.0013 6 6 5.9700 0.7714 -0.0023 7 6 6.0081 -0.6229 -0.0008 8 6 4.8310 -1.3517 -0.0009 9 6 3.6089 -0.6957 -0.0007 10 7 2.2903 -1.1191 -0.0005 11 6 1.8523 -2.4202 -0.0003 12 1 0.9432 -2.6839 0.5198 13 6 2.5782 -3.3974 -0.6690 14 7 3.4358 -3.0545 -1.6037 15 14 2.3354 -5.1991 -0.2396 16 1 1.2588 -5.7695 -1.0887 17 1 3.5999 -5.9399 -0.4794 18 1 1.9544 -5.3201 1.1906 19 8 7.1977 -1.2860 0.0019 20 6 8.3553 -0.5328 -0.3749 21 6 8.3191 0.8087 0.3697 22 8 7.1223 1.4979 -0.0066 23 1 -0.3633 -0.0531 1.0263 24 1 -0.3633 0.9153 -0.4672 25 1 -0.3632 -0.8623 -0.5591 26 1 4.7327 2.5148 -0.0008 27 1 4.8643 -2.4313 -0.0002 28 1 3.8871 -3.7388 -2.1224 29 1 9.2563 -1.0815 -0.1002 30 1 8.3453 -0.3565 -1.4505 31 1 9.1890 1.4053 0.0947 32 1 8.3193 0.6328 1.4454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031943583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:44 Heat of formation + Delta-G solvation = -2.481694 kcal Electronic energy + Delta-G solvation = -19497.380890 eV Core-core repulsion = 16424.389599 eV Total energy + Delta-G solvation = -3072.991291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.94778 -39.97409 -36.51537 -35.21164 -34.13237 -31.21154 -30.52480 -29.08654 -28.97431 -25.79635 -25.22408 -23.68143 -21.50209 -20.33135 -19.44162 -18.28579 -17.42816 -16.60275 -16.21426 -15.37351 -15.13874 -14.52522 -14.25052 -14.20018 -13.72931 -13.43079 -13.17775 -12.87998 -12.32175 -12.17881 -12.10911 -11.87550 -11.64464 -11.38946 -11.21477 -10.97298 -10.66053 -10.58633 -9.96968 -9.72822 -9.16233 -8.84989 -8.68430 -7.09957 -6.67494 -6.66402 -4.52110 1.98992 2.53834 2.94254 3.01694 3.06014 3.62169 3.71572 3.83115 3.98441 4.63358 4.70047 4.71830 4.92326 5.15245 5.21305 5.37382 5.49059 5.62952 5.77563 5.99295 6.20871 6.22976 6.30761 6.42106 6.69621 6.74928 6.82822 7.04025 7.13925 7.22956 7.44696 7.67139 7.88970 8.08849 8.27430 8.60316 9.18513 9.35994 10.18690 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.008724 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.998881 B = 3208.677890 C = 4483.768940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.213 3.787 3 N -0.527 5.527 4 C 0.038 3.962 5 C -0.087 4.087 6 C 0.031 3.969 7 C 0.018 3.982 8 C -0.038 4.038 9 C 0.052 3.948 10 N -0.283 5.283 11 C -0.360 4.360 12 H 0.111 0.889 13 C 0.053 3.947 14 N -0.819 5.819 15 Si 0.928 3.072 16 H -0.270 1.270 17 H -0.274 1.274 18 H -0.262 1.262 19 O -0.313 6.313 20 C 0.025 3.975 21 C 0.025 3.975 22 O -0.315 6.315 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.123 0.877 27 H 0.130 0.870 28 H 0.283 0.717 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 1.015 2.242 5.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.049 4.049 3 N -0.252 5.252 4 C -0.086 4.086 5 C -0.108 4.108 6 C -0.015 4.015 7 C -0.028 4.028 8 C -0.059 4.059 9 C -0.064 4.064 10 N 0.045 4.955 11 C -0.488 4.488 12 H 0.129 0.871 13 C -0.160 4.160 14 N -0.448 5.448 15 Si 0.752 3.248 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.186 1.186 19 O -0.228 6.228 20 C -0.051 4.051 21 C -0.051 4.051 22 O -0.230 6.230 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.893 1.575 2.115 5.558 hybrid contribution 0.569 -1.799 -0.123 1.890 sum 5.462 -0.224 1.992 5.818 Atomic orbital electron populations 1.19993 0.86172 1.03044 1.02135 1.23300 0.95100 0.81737 1.04736 1.70157 1.00174 1.27892 1.26934 1.18411 0.91523 0.90432 1.08196 1.18838 0.86812 0.98536 1.06595 1.18206 0.85876 0.88571 1.08817 1.18246 0.85442 0.88985 1.10137 1.19041 0.86584 0.99595 1.00658 1.18152 0.86039 0.93098 1.09076 1.41144 1.02619 1.05827 1.45883 1.19660 1.12313 0.80612 1.36230 0.87127 1.25611 0.95008 1.01694 0.93686 1.70008 1.23468 1.35989 1.15299 0.85904 0.78639 0.80345 0.79889 1.19495 1.19927 1.18558 1.86236 1.13444 1.37654 1.85478 1.23424 0.88753 0.93325 0.99645 1.23434 0.87647 0.94431 0.99580 1.86217 1.13925 1.37399 1.85496 0.91473 0.90534 0.90668 0.85936 0.85214 0.90653 0.87287 0.91366 0.87237 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 10.12 36.01 0.36 -0.64 16 2 C 0.21 5.16 7.83 -154.33 -1.21 3.95 16 3 N -0.53 -13.43 11.27 -8.09 -0.09 -13.52 16 4 C 0.04 1.00 7.22 -84.65 -0.61 0.38 16 5 C -0.09 -2.03 10.00 -39.05 -0.39 -2.42 16 6 C 0.03 0.69 6.49 -39.13 -0.25 0.44 16 7 C 0.02 0.41 6.50 -39.04 -0.25 0.16 16 8 C -0.04 -0.96 8.46 -39.33 -0.33 -1.30 16 9 C 0.05 1.39 6.15 -83.84 -0.52 0.88 16 10 N -0.28 -7.44 2.86 -56.64 -0.16 -7.60 16 11 C -0.36 -9.07 9.37 -14.87 -0.14 -9.21 16 12 H 0.11 2.56 7.91 -52.48 -0.41 2.15 16 13 C 0.05 1.31 4.54 -17.50 -0.08 1.23 16 14 N -0.82 -21.34 10.57 55.49 0.59 -20.76 16 15 Si 0.93 18.50 29.60 -169.99 -5.03 13.47 16 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 O -0.31 -6.35 10.41 -33.01 -0.34 -6.69 16 20 C 0.02 0.36 7.26 37.40 0.27 0.63 16 21 C 0.03 0.35 7.26 37.40 0.27 0.63 16 22 O -0.32 -5.97 10.41 -33.11 -0.34 -6.31 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 26 H 0.12 2.60 8.06 -52.48 -0.42 2.17 16 27 H 0.13 3.41 6.24 -52.48 -0.33 3.08 16 28 H 0.28 6.86 8.32 -40.82 -0.34 6.52 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 274.88 15.07 4.14 4.14 Total: -1.00 -30.98 274.88 -7.37 -38.35 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.25 Total: 4.19 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.88 Total: -5.27 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.33 Total: -41.88 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.69 Total: -13.00 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.98 -7.37 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031943583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.869 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds