Wall clock time and date at job start Mon Mar 30 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30075 * 124.98379 * 2 1 4 4 C 1.35969 * 109.74690 * 180.02562 * 3 2 1 5 5 C 1.39683 * 133.41422 * 179.97438 * 4 3 2 6 6 C 1.38211 * 119.95435 * 180.02562 * 5 4 3 7 7 C 1.39488 * 120.26191 * 359.91496 * 6 5 4 8 8 C 1.38445 * 120.19787 * 0.12469 * 7 6 5 9 9 C 1.38705 * 120.00775 * 359.91484 * 8 7 6 10 10 N 1.36593 * 124.98876 * 180.02562 * 2 1 3 11 11 C 1.37286 * 126.40585 * 359.96174 * 10 2 1 12 12 H 1.08007 * 120.00166 * 326.25024 * 11 10 2 13 13 C 1.38887 * 120.00125 * 146.25132 * 11 10 2 14 14 N 1.31402 * 120.00036 * 340.18316 * 13 11 10 15 15 Si 1.86802 * 120.00166 * 160.18280 * 13 11 10 16 16 H 1.48507 * 109.46727 * 90.00085 * 15 13 11 17 17 H 1.48495 * 109.47347 * 209.99837 * 15 13 11 18 18 H 1.48497 * 109.47088 * 330.00264 * 15 13 11 19 19 O 1.36193 * 120.69732 * 180.17819 * 7 6 5 20 20 C 1.43150 * 116.72593 * 342.80890 * 19 7 6 21 21 C 1.53467 * 108.24934 * 46.30071 * 20 19 7 22 22 O 1.36225 * 119.07333 * 179.82703 * 6 5 4 23 23 H 1.08999 * 109.47024 * 267.04017 * 1 2 3 24 24 H 1.09002 * 109.47101 * 27.04280 * 1 2 3 25 25 H 1.09002 * 109.46568 * 147.04119 * 1 2 3 26 26 H 1.08006 * 120.02446 * 0.03813 * 5 4 3 27 27 H 1.08003 * 119.99751 * 179.97438 * 8 7 6 28 28 H 0.97000 * 120.00104 * 185.17808 * 14 13 11 29 29 H 1.08999 * 109.70959 * 165.99224 * 20 19 7 30 30 H 1.09000 * 109.71580 * 286.61647 * 20 19 7 31 31 H 1.09004 * 109.71000 * 180.35307 * 21 20 19 32 32 H 1.09002 * 109.73675 * 59.75765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2528 1.0657 0.0000 4 6 3.5647 0.7084 -0.0006 5 6 4.7576 1.4351 -0.0013 6 6 5.9700 0.7714 -0.0023 7 6 6.0081 -0.6229 -0.0008 8 6 4.8310 -1.3517 -0.0009 9 6 3.6089 -0.6957 -0.0007 10 7 2.2903 -1.1191 -0.0005 11 6 1.8523 -2.4202 -0.0003 12 1 0.9432 -2.6839 0.5198 13 6 2.5782 -3.3974 -0.6690 14 7 3.4358 -3.0545 -1.6037 15 14 2.3354 -5.1991 -0.2396 16 1 1.2588 -5.7695 -1.0887 17 1 3.5999 -5.9399 -0.4794 18 1 1.9544 -5.3201 1.1906 19 8 7.1977 -1.2860 0.0019 20 6 8.3553 -0.5328 -0.3749 21 6 8.3191 0.8087 0.3697 22 8 7.1223 1.4979 -0.0066 23 1 -0.3633 -0.0531 1.0263 24 1 -0.3633 0.9153 -0.4672 25 1 -0.3632 -0.8623 -0.5591 26 1 4.7327 2.5148 -0.0008 27 1 4.8643 -2.4313 -0.0002 28 1 3.8871 -3.7388 -2.1224 29 1 9.2563 -1.0815 -0.1002 30 1 8.3453 -0.3565 -1.4505 31 1 9.1890 1.4053 0.0947 32 1 8.3193 0.6328 1.4454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031943583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:43 Heat of formation + Delta-G solvation = -21.876113 kcal Electronic energy + Delta-G solvation = -19498.221895 eV Core-core repulsion = 16424.389599 eV Total energy + Delta-G solvation = -3073.832296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.74123 -41.56110 -38.05371 -36.92534 -35.97137 -33.08557 -32.02759 -30.80838 -30.44672 -27.52584 -27.03486 -25.14387 -23.30077 -21.98208 -21.22461 -19.97775 -19.01825 -18.32090 -17.77333 -17.15126 -16.66679 -16.15043 -15.94214 -15.71268 -15.22812 -15.11258 -14.76014 -14.69358 -13.95787 -13.84417 -13.61920 -13.42999 -13.22379 -12.93598 -12.84466 -12.64708 -12.20759 -11.93917 -11.54153 -11.43258 -10.92762 -10.68906 -10.55541 -8.93578 -8.50641 -8.46528 -6.43702 0.15361 0.74195 1.34064 1.40496 1.52430 1.97329 2.16469 2.23056 2.30694 2.83669 2.95496 3.05498 3.45883 3.73033 3.83018 4.06243 4.17951 4.21426 4.53888 4.56882 4.65996 4.70527 4.79253 4.84068 4.90960 5.02570 5.14033 5.23720 5.29547 5.45846 5.64477 6.04529 6.06948 6.21344 6.61978 6.74511 7.32416 7.49209 8.37141 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.008724 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.998881 B = 3208.677890 C = 4483.768940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.200 3.800 3 N -0.545 5.545 4 C 0.012 3.988 5 C -0.098 4.098 6 C 0.042 3.958 7 C 0.027 3.973 8 C -0.065 4.065 9 C 0.023 3.977 10 N -0.303 5.303 11 C -0.384 4.384 12 H 0.125 0.875 13 C 0.013 3.987 14 N -0.857 5.857 15 Si 1.001 2.999 16 H -0.256 1.256 17 H -0.277 1.277 18 H -0.255 1.255 19 O -0.329 6.329 20 C 0.014 3.986 21 C 0.018 3.982 22 O -0.320 6.320 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.284 0.716 29 H 0.156 0.844 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 0.833 2.703 6.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.061 4.061 3 N -0.270 5.270 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.004 4.004 7 C -0.019 4.019 8 C -0.086 4.086 9 C -0.092 4.092 10 N 0.025 4.975 11 C -0.511 4.511 12 H 0.143 0.857 13 C -0.197 4.197 14 N -0.487 5.487 15 Si 0.821 3.179 16 H -0.181 1.181 17 H -0.202 1.202 18 H -0.178 1.178 19 O -0.245 6.245 20 C -0.061 4.061 21 C -0.057 4.057 22 O -0.236 6.236 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.157 0.843 27 H 0.130 0.870 28 H 0.094 0.906 29 H 0.173 0.827 30 H 0.088 0.912 31 H 0.177 0.823 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.970 1.414 2.579 6.655 hybrid contribution 0.450 -1.653 -0.270 1.734 sum 6.419 -0.239 2.309 6.826 Atomic orbital electron populations 1.20178 0.82452 1.04220 1.03979 1.24391 0.97280 0.81133 1.03335 1.70150 1.00257 1.28569 1.28020 1.18844 0.92487 0.90633 1.09128 1.19085 0.86685 0.99360 1.06722 1.18162 0.86942 0.88211 1.07125 1.18284 0.86008 0.89399 1.08231 1.19021 0.87544 0.98901 1.03156 1.18555 0.86786 0.93853 1.10017 1.41442 1.02800 1.06609 1.46685 1.20149 1.13286 0.80822 1.36858 0.85735 1.26591 0.94243 1.05938 0.92919 1.70123 1.24656 1.37363 1.16520 0.84838 0.78571 0.74570 0.79957 1.18085 1.20231 1.17821 1.86215 1.13821 1.39068 1.85353 1.23944 0.87982 0.94102 1.00060 1.23930 0.86914 0.94661 1.00153 1.86213 1.14204 1.37826 1.85323 0.89064 0.88678 0.90124 0.84294 0.86978 0.90623 0.82658 0.91154 0.82258 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.79 10.12 71.24 0.72 -1.07 16 2 C 0.20 9.85 7.83 137.75 1.08 10.93 16 3 N -0.55 -28.32 11.27 -179.52 -2.02 -30.34 16 4 C 0.01 0.66 7.22 39.40 0.28 0.94 16 5 C -0.10 -4.59 10.00 22.61 0.23 -4.37 16 6 C 0.04 1.86 6.49 22.57 0.15 2.00 16 7 C 0.03 1.27 6.50 22.62 0.15 1.42 16 8 C -0.06 -3.43 8.46 22.43 0.19 -3.24 16 9 C 0.02 1.29 6.15 38.75 0.24 1.52 16 10 N -0.30 -16.36 2.86 -333.10 -0.95 -17.32 16 11 C -0.38 -19.67 9.37 83.99 0.79 -18.89 16 12 H 0.13 5.77 7.91 -2.91 -0.02 5.75 16 13 C 0.01 0.62 4.54 84.91 0.39 1.01 16 14 N -0.86 -46.08 10.57 21.65 0.23 -45.85 16 15 Si 1.00 38.07 29.60 68.60 2.03 40.10 16 16 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 17 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 18 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 19 O -0.33 -13.03 10.41 -83.66 -0.87 -13.90 16 20 C 0.01 0.36 7.26 72.14 0.52 0.88 16 21 C 0.02 0.44 7.26 72.14 0.52 0.96 16 22 O -0.32 -11.43 10.41 -84.03 -0.87 -12.30 16 23 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 24 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 25 H 0.08 2.78 7.87 -2.39 -0.02 2.76 16 26 H 0.14 5.87 8.06 -2.91 -0.02 5.85 16 27 H 0.11 6.20 6.24 -2.91 -0.02 6.18 16 28 H 0.28 14.21 8.32 -92.71 -0.77 13.44 16 29 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.16 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.03 274.88 3.94 -66.09 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 1.15 Total: 21.41 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.25 Total: -7.89 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -2.75 Total: -93.51 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.75 Total: -26.21 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -70.03 3.94 -66.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031943583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.214 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds