Wall clock time and date at job start Mon Mar 30 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86808 * 119.99820 * 2 1 4 4 H 1.48505 * 109.46877 * 275.30011 * 3 2 1 5 5 H 1.48496 * 109.47106 * 35.30097 * 3 2 1 6 6 H 1.48500 * 109.47129 * 155.30494 * 3 2 1 7 7 C 1.39901 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99829 * 346.78874 * 7 2 1 9 9 C 1.41160 * 120.00001 * 166.79215 * 7 2 1 10 10 C 1.40865 * 120.16438 * 151.22441 * 9 7 2 11 11 C 1.36369 * 119.83259 * 179.97438 * 10 9 7 12 12 C 1.39487 * 120.16649 * 359.97438 * 11 10 9 13 13 N 1.39239 * 119.83664 * 180.02562 * 12 11 10 14 14 C 1.34772 * 119.99664 * 33.56856 * 13 12 11 15 15 O 1.21278 * 120.00354 * 4.85679 * 14 13 12 16 16 C 1.50709 * 120.00000 * 184.85830 * 14 13 12 17 17 H 1.08995 * 109.87471 * 40.69647 * 16 14 13 18 18 C 1.54319 * 109.88510 * 279.67086 * 16 14 13 19 19 C 1.55402 * 102.89618 * 218.40495 * 18 16 14 20 20 C 1.54913 * 101.74093 * 35.47945 * 19 18 16 21 21 N 1.47442 * 109.88944 * 161.72904 * 16 14 13 22 22 C 1.39486 * 120.32883 * 0.29418 * 12 11 10 23 23 C 1.36367 * 120.17042 * 359.44240 * 22 12 11 24 24 H 0.97006 * 120.00479 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.08571 * 359.96135 * 10 9 7 26 26 H 1.07996 * 119.92205 * 180.02562 * 11 10 9 27 27 H 0.97002 * 120.00144 * 213.56947 * 13 12 11 28 28 H 1.09002 * 110.70422 * 336.68850 * 18 16 14 29 29 H 1.09000 * 110.70727 * 99.92737 * 18 16 14 30 30 H 1.08998 * 110.86945 * 277.39028 * 19 18 16 31 31 H 1.08996 * 111.05363 * 153.64896 * 19 18 16 32 32 H 1.08997 * 110.37341 * 204.18871 * 20 19 18 33 33 H 1.08997 * 110.46588 * 81.89615 * 20 19 18 34 34 H 1.00893 * 110.99748 * 240.68094 * 21 16 14 35 35 H 1.08001 * 119.91308 * 179.72399 * 22 12 11 36 36 H 1.08007 * 120.09079 * 180.24947 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3781 2.1112 -1.3942 5 1 1.5006 2.6178 0.8090 6 1 3.5918 1.4105 0.5849 7 6 2.0082 -1.2115 0.0005 8 1 1.4897 -2.1344 0.2147 9 6 3.3918 -1.2278 -0.2788 10 6 4.2139 -2.2291 0.2743 11 6 5.5496 -2.2386 -0.0004 12 6 6.1021 -1.2605 -0.8272 13 7 7.4667 -1.2771 -1.1036 14 6 8.1208 -2.4517 -1.1983 15 8 7.5064 -3.4951 -1.1306 16 6 9.6157 -2.4685 -1.3883 17 1 10.0771 -1.7022 -0.7655 18 6 9.9592 -2.2166 -2.8716 19 6 11.1617 -3.1701 -3.1159 20 6 10.7866 -4.3840 -2.2296 21 7 10.1518 -3.7948 -1.0314 22 6 5.2954 -0.2626 -1.3741 23 6 3.9572 -0.2432 -1.1127 24 1 -0.4851 0.8401 0.0004 25 1 3.7874 -2.9872 0.9146 26 1 6.1811 -3.0058 0.4225 27 1 7.9466 -0.4433 -1.2280 28 1 9.1192 -2.4843 -3.5125 29 1 10.2497 -1.1778 -3.0288 30 1 12.0931 -2.7144 -2.7801 31 1 11.2262 -3.4579 -4.1652 32 1 11.6811 -4.9407 -1.9502 33 1 10.0835 -5.0337 -2.7508 34 1 10.8106 -3.7256 -0.2703 35 1 5.7311 0.4940 -2.0098 36 1 3.3331 0.5278 -1.5400 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035053947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:58 Heat of formation + Delta-G solvation = -8.405192 kcal Electronic energy + Delta-G solvation = -18822.007274 eV Core-core repulsion = 15884.592215 eV Total energy + Delta-G solvation = -2937.415059 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05597 -38.28479 -36.97527 -34.38174 -33.06519 -30.34754 -30.22808 -29.87682 -28.87584 -24.94587 -22.78414 -21.82791 -21.43047 -20.50410 -19.52602 -17.55882 -17.25582 -16.96294 -16.27693 -15.25896 -15.08376 -14.47846 -14.02228 -13.78772 -13.60885 -13.19486 -12.92310 -12.69182 -12.47183 -12.28168 -12.11615 -11.93078 -11.53371 -11.40449 -11.11576 -10.86254 -10.76774 -10.50187 -10.09472 -9.71911 -9.46376 -9.09259 -9.03035 -8.48451 -7.75157 -7.11471 -6.91380 -4.40070 2.41413 2.75552 3.04566 3.17245 3.26013 3.33889 3.48608 3.98880 4.14467 4.39810 4.54175 4.61629 4.77152 4.94964 5.14545 5.24019 5.41958 5.46696 5.52485 5.59567 5.73343 5.95234 5.98782 6.12268 6.50221 6.56086 6.76467 6.80261 6.89846 7.16613 7.24055 7.33503 7.53467 7.70090 7.87627 8.14279 8.18970 8.36637 8.64396 8.80662 8.87201 10.11190 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.049782 B = 0.004318 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.314295 B = 6483.245607 C = 6815.111584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.079 3.921 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.241 1.241 7 C -0.440 4.440 8 H 0.091 0.909 9 C 0.086 3.914 10 C -0.197 4.197 11 C -0.069 4.069 12 C 0.000 4.000 13 N -0.659 5.659 14 C 0.504 3.496 15 O -0.506 6.506 16 C 0.063 3.937 17 H 0.081 0.919 18 C -0.129 4.129 19 C -0.153 4.153 20 C 0.052 3.948 21 N -0.662 5.662 22 C -0.092 4.092 23 C -0.227 4.227 24 H 0.285 0.715 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.393 0.607 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.342 0.658 35 H 0.095 0.905 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.943 0.542 -3.889 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.469 4.469 8 H 0.109 0.891 9 C 0.083 3.917 10 C -0.217 4.217 11 C -0.089 4.089 12 C -0.093 4.093 13 N -0.303 5.303 14 C 0.289 3.711 15 O -0.380 6.380 16 C -0.051 4.051 17 H 0.099 0.901 18 C -0.168 4.168 19 C -0.192 4.192 20 C -0.077 4.077 21 N -0.290 5.290 22 C -0.112 4.112 23 C -0.246 4.246 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.226 0.774 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.113 0.887 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.619 -0.530 -3.853 19.021 hybrid contribution 1.199 1.806 -0.222 2.179 sum 19.817 1.276 -4.075 20.272 Atomic orbital electron populations 1.69685 1.08015 1.30165 1.35895 1.26204 0.94839 1.01781 0.91033 0.86256 0.81258 0.79534 0.78539 1.19942 1.22232 1.16404 1.19506 0.91655 0.95674 1.40040 0.89117 1.17783 0.93377 0.91048 0.89490 1.20692 0.92653 1.02922 1.05449 1.20411 0.95476 0.97092 0.95901 1.17107 0.82039 1.02833 1.07280 1.43032 1.08497 1.07965 1.70836 1.20454 0.89024 0.83946 0.77653 1.90679 1.68090 1.31866 1.47339 1.22060 0.93709 0.92012 0.97313 0.90126 1.22788 0.98954 1.00344 0.94731 1.23206 0.97709 0.96855 1.01439 1.22893 0.97939 0.96332 0.90568 1.61005 1.39078 1.20627 1.08328 1.20090 0.93687 0.98105 0.99321 1.20512 0.94284 1.03786 1.06032 0.90491 0.87868 0.87315 0.77378 0.90227 0.90171 0.91282 0.90358 0.91246 0.90128 0.84102 0.88707 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.99 13.93 55.55 0.77 -21.22 16 2 C 0.08 2.11 5.47 -17.34 -0.09 2.02 16 3 Si 0.92 20.89 24.36 -169.99 -4.14 16.75 16 4 H -0.27 -6.01 6.77 56.52 0.38 -5.62 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.24 -5.56 6.48 56.52 0.37 -5.19 16 7 C -0.44 -12.17 9.60 -37.85 -0.36 -12.53 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.09 2.25 5.19 -106.80 -0.55 1.70 16 10 C -0.20 -4.88 9.74 -39.26 -0.38 -5.27 16 11 C -0.07 -1.61 8.58 -39.79 -0.34 -1.95 16 12 C 0.00 0.00 6.29 -83.57 -0.53 -0.53 16 13 N -0.66 -11.00 5.31 -9.73 -0.05 -11.05 16 14 C 0.50 8.53 6.68 -10.98 -0.07 8.46 16 15 O -0.51 -11.00 14.21 5.56 0.08 -10.92 16 16 C 0.06 0.74 3.76 -67.87 -0.25 0.48 16 17 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.13 -1.25 6.48 -24.77 -0.16 -1.41 16 19 C -0.15 -1.20 7.08 -24.45 -0.17 -1.38 16 20 C 0.05 0.49 7.58 -2.30 -0.02 0.48 16 21 N -0.66 -7.77 6.59 -105.02 -0.69 -8.47 16 22 C -0.09 -1.98 9.89 -39.79 -0.39 -2.38 16 23 C -0.23 -5.50 6.86 -39.26 -0.27 -5.77 16 24 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 25 H 0.10 2.44 8.06 -52.48 -0.42 2.02 16 26 H 0.11 2.52 6.39 -52.49 -0.34 2.19 16 27 H 0.39 5.01 8.81 -40.82 -0.36 4.65 16 28 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.34 3.17 8.91 -39.30 -0.35 2.82 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.10 2.40 4.21 -52.48 -0.22 2.18 16 LS Contribution 295.44 15.07 4.45 4.45 Total: -1.00 -31.85 295.44 -7.85 -39.71 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.67 Total: 8.82 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.60 Total: -18.07 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.03 Total: -40.73 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.14 Total: 16.75 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.85 -7.85 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035053947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.300 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds