Wall clock time and date at job start Mon Mar 30 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47251 * 2 1 4 4 C 1.34893 * 117.00112 * 179.97438 * 3 2 1 5 5 O 1.21601 * 119.99540 * 359.97438 * 4 3 2 6 6 C 1.46958 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.33279 * 126.19732 * 354.74446 * 6 4 3 8 8 C 1.32977 * 109.97450 * 179.97438 * 7 6 4 9 9 C 1.40706 * 131.36336 * 180.02562 * 8 7 6 10 10 C 1.36493 * 119.44831 * 180.02562 * 9 8 7 11 11 C 1.40126 * 119.68839 * 359.97438 * 10 9 8 12 12 C 1.35412 * 120.13965 * 359.97438 * 11 10 9 13 13 N 1.36146 * 120.64359 * 0.04692 * 12 11 10 14 14 C 1.38377 * 132.13467 * 179.97438 * 13 12 11 15 15 C 1.38891 * 127.00050 * 359.97438 * 14 13 12 16 16 H 1.07996 * 120.00093 * 142.29135 * 15 14 13 17 17 C 1.40471 * 119.99838 * 322.29669 * 15 14 13 18 18 N 1.30610 * 119.99997 * 342.38525 * 17 15 14 19 19 Si 1.86801 * 119.99976 * 162.39102 * 17 15 14 20 20 H 1.48501 * 109.47107 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47225 * 119.99709 * 19 17 15 22 22 H 1.48505 * 109.47138 * 239.99893 * 19 17 15 23 23 H 1.08999 * 109.46869 * 300.00270 * 1 2 3 24 24 H 1.08997 * 109.47055 * 59.99781 * 1 2 3 25 25 H 1.08994 * 109.47202 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46869 * 239.99730 * 2 1 3 27 27 H 1.09004 * 109.46757 * 119.99926 * 2 1 3 28 28 H 1.08004 * 120.27882 * 0.02562 * 9 8 7 29 29 H 1.08002 * 120.15613 * 180.25688 * 10 9 8 30 30 H 1.07992 * 119.92951 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.67611 * 180.02562 * 12 11 10 32 32 H 0.96999 * 120.00357 * 175.11833 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0920 0.5813 0.0015 6 6 3.9131 2.9037 0.0000 7 7 3.2243 4.0403 -0.0995 8 6 4.0541 5.0788 -0.0652 9 6 3.8141 6.4635 -0.1345 10 6 4.8665 7.3308 -0.0756 11 6 6.1699 6.8327 0.0534 12 6 6.3840 5.4972 0.1199 13 7 5.3414 4.6236 0.0616 14 6 5.2847 3.2417 0.1060 15 6 6.3546 2.3647 0.2284 16 1 6.2545 1.4708 0.8262 17 6 7.5671 2.6404 -0.4252 18 7 7.5997 3.5050 -1.4036 19 14 9.1328 1.7703 0.1049 20 1 8.8299 0.8463 1.2273 21 1 9.6811 0.9977 -1.0386 22 1 10.1321 2.7755 0.5477 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8056 6.8371 -0.2335 29 1 4.6951 8.3960 -0.1236 30 1 7.0054 7.5153 0.1000 31 1 7.3916 5.1215 0.2197 32 1 8.4472 3.7483 -1.8078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036220603.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:09 Heat of formation + Delta-G solvation = -17.125427 kcal Electronic energy + Delta-G solvation = -19054.484158 eV Core-core repulsion = 15980.857868 eV Total energy + Delta-G solvation = -3073.626291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.15100 -39.05909 -36.13203 -35.35554 -34.32526 -32.05949 -31.21048 -29.40118 -28.76945 -25.49635 -24.18708 -22.40311 -21.42795 -21.29038 -19.42740 -18.06182 -16.77956 -15.96595 -15.75063 -15.54976 -15.28646 -15.01763 -14.40813 -14.01027 -13.61490 -13.29239 -13.22471 -12.65024 -12.31529 -11.97888 -11.63559 -11.48803 -11.40785 -11.20241 -11.06421 -10.84459 -10.58466 -10.42844 -9.92514 -9.81601 -9.49798 -9.41729 -8.93045 -7.73641 -7.33286 -6.77329 -4.67622 1.67292 2.40280 2.83816 2.92741 3.00842 3.05841 3.45896 3.72088 3.96774 4.21603 4.67816 4.87930 5.26732 5.30263 5.38085 5.55479 5.62910 5.69434 5.84378 5.94077 6.07930 6.10514 6.23911 6.43616 6.57920 6.76237 6.82697 7.01137 7.07437 7.26945 7.36666 7.64478 8.00664 8.17455 8.31501 8.54544 8.88635 9.26662 9.77171 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.008883 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.186053 B = 3151.210070 C = 4845.667801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.555 3.445 5 O -0.523 6.523 6 C -0.133 4.133 7 N -0.442 5.442 8 C 0.156 3.844 9 C -0.081 4.081 10 C -0.124 4.124 11 C -0.211 4.211 12 C 0.142 3.858 13 N -0.395 5.395 14 C 0.256 3.744 15 C -0.422 4.422 16 H 0.114 0.886 17 C 0.071 3.929 18 N -0.790 5.790 19 Si 0.919 3.081 20 H -0.254 1.254 21 H -0.269 1.269 22 H -0.269 1.269 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 1.714 2.182 3.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.404 3.596 5 O -0.413 6.413 6 C -0.259 4.259 7 N -0.163 5.163 8 C -0.088 4.088 9 C -0.101 4.101 10 C -0.148 4.148 11 C -0.234 4.234 12 C 0.019 3.981 13 N -0.075 5.075 14 C 0.144 3.856 15 C -0.456 4.456 16 H 0.132 0.868 17 C -0.149 4.149 18 N -0.416 5.416 19 Si 0.742 3.258 20 H -0.177 1.177 21 H -0.194 1.194 22 H -0.193 1.193 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.506 1.354 1.895 3.421 hybrid contribution 1.693 -0.406 -0.052 1.742 sum -0.813 0.949 1.843 2.226 Atomic orbital electron populations 1.21753 0.93506 1.02005 1.03293 1.22799 0.94630 0.82025 1.01833 1.86692 1.24993 1.29946 1.85412 1.19477 0.79300 0.87896 0.72914 1.90774 1.60130 1.41534 1.48856 1.19081 0.89955 0.89458 1.27429 1.69949 1.31897 0.96553 1.17873 1.20153 0.80348 0.94342 1.14001 1.19966 0.99404 0.88228 1.02498 1.20615 0.92217 0.98755 1.03167 1.20380 0.97631 0.93503 1.11849 1.21490 0.92470 0.88916 0.95183 1.42694 1.06743 1.06394 1.51684 1.18322 0.93404 0.79640 0.94191 1.18809 0.93988 1.06600 1.26160 0.86843 1.26141 1.01403 0.94973 0.92405 1.69735 1.29419 1.27334 1.15152 0.86046 0.79322 0.80219 0.80235 1.17672 1.19405 1.19346 0.91765 0.91731 0.90998 0.91977 0.91991 0.85280 0.86164 0.85404 0.83510 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.29 37.16 0.38 -1.54 16 2 C 0.06 1.06 6.20 37.16 0.23 1.29 16 3 O -0.35 -7.93 10.23 -41.02 -0.42 -8.35 16 4 C 0.56 14.26 7.94 34.26 0.27 14.53 16 5 O -0.52 -13.87 15.26 -19.34 -0.30 -14.17 16 6 C -0.13 -3.62 7.10 -82.40 -0.58 -4.20 16 7 N -0.44 -11.70 11.26 -8.58 -0.10 -11.80 16 8 C 0.16 3.82 7.75 -155.73 -1.21 2.61 16 9 C -0.08 -1.60 10.11 -39.28 -0.40 -2.00 16 10 C -0.12 -2.15 10.07 -39.50 -0.40 -2.54 16 11 C -0.21 -3.80 10.00 -39.88 -0.40 -4.20 16 12 C 0.14 3.06 9.33 -16.64 -0.16 2.91 16 13 N -0.39 -9.84 2.89 -59.87 -0.17 -10.01 16 14 C 0.26 6.93 6.21 -83.36 -0.52 6.41 16 15 C -0.42 -11.03 8.27 -38.50 -0.32 -11.35 16 16 H 0.11 3.00 7.29 -52.49 -0.38 2.62 16 17 C 0.07 1.68 4.53 -17.23 -0.08 1.60 16 18 N -0.79 -18.99 10.91 55.58 0.61 -18.38 16 19 Si 0.92 17.66 29.60 -169.99 -5.03 12.63 16 20 H -0.25 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.15 3.09 6.31 -52.49 -0.33 2.76 16 32 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 LS Contribution 286.05 15.07 4.31 4.31 Total: -1.00 -30.51 286.05 -7.50 -38.01 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -3.23 Total: 4.24 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.17 Total: 3.53 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.34 Total: -40.19 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.71 Total: -22.52 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.51 -7.50 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036220603.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.880 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds