Wall clock time and date at job start Mon Mar 30 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47251 * 2 1 4 4 C 1.34893 * 117.00112 * 179.97438 * 3 2 1 5 5 O 1.21601 * 119.99540 * 359.97438 * 4 3 2 6 6 C 1.46958 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.33279 * 126.19732 * 354.74446 * 6 4 3 8 8 C 1.32977 * 109.97450 * 179.97438 * 7 6 4 9 9 C 1.40706 * 131.36336 * 180.02562 * 8 7 6 10 10 C 1.36493 * 119.44831 * 180.02562 * 9 8 7 11 11 C 1.40126 * 119.68839 * 359.97438 * 10 9 8 12 12 C 1.35412 * 120.13965 * 359.97438 * 11 10 9 13 13 N 1.36146 * 120.64359 * 0.04692 * 12 11 10 14 14 C 1.38377 * 132.13467 * 179.97438 * 13 12 11 15 15 C 1.38891 * 127.00050 * 359.97438 * 14 13 12 16 16 H 1.07996 * 120.00093 * 142.29135 * 15 14 13 17 17 C 1.40471 * 119.99838 * 322.29669 * 15 14 13 18 18 N 1.30610 * 119.99997 * 342.38525 * 17 15 14 19 19 Si 1.86801 * 119.99976 * 162.39102 * 17 15 14 20 20 H 1.48501 * 109.47107 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47225 * 119.99709 * 19 17 15 22 22 H 1.48505 * 109.47138 * 239.99893 * 19 17 15 23 23 H 1.08999 * 109.46869 * 300.00270 * 1 2 3 24 24 H 1.08997 * 109.47055 * 59.99781 * 1 2 3 25 25 H 1.08994 * 109.47202 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46869 * 239.99730 * 2 1 3 27 27 H 1.09004 * 109.46757 * 119.99926 * 2 1 3 28 28 H 1.08004 * 120.27882 * 0.02562 * 9 8 7 29 29 H 1.08002 * 120.15613 * 180.25688 * 10 9 8 30 30 H 1.07992 * 119.92951 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.67611 * 180.02562 * 12 11 10 32 32 H 0.96999 * 120.00357 * 175.11833 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0920 0.5813 0.0015 6 6 3.9131 2.9037 0.0000 7 7 3.2243 4.0403 -0.0995 8 6 4.0541 5.0788 -0.0652 9 6 3.8141 6.4635 -0.1345 10 6 4.8665 7.3308 -0.0756 11 6 6.1699 6.8327 0.0534 12 6 6.3840 5.4972 0.1199 13 7 5.3414 4.6236 0.0616 14 6 5.2847 3.2417 0.1060 15 6 6.3546 2.3647 0.2284 16 1 6.2545 1.4708 0.8262 17 6 7.5671 2.6404 -0.4252 18 7 7.5997 3.5050 -1.4036 19 14 9.1328 1.7703 0.1049 20 1 8.8299 0.8463 1.2273 21 1 9.6811 0.9977 -1.0386 22 1 10.1321 2.7755 0.5477 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8056 6.8371 -0.2335 29 1 4.6951 8.3960 -0.1236 30 1 7.0054 7.5153 0.1000 31 1 7.3916 5.1215 0.2197 32 1 8.4472 3.7483 -1.8078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036220603.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:09 Heat of formation + Delta-G solvation = -34.973363 kcal Electronic energy + Delta-G solvation = -19055.258103 eV Core-core repulsion = 15980.857868 eV Total energy + Delta-G solvation = -3074.400235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.94207 -40.88307 -37.79323 -37.16498 -36.13779 -33.77956 -32.55494 -31.16117 -30.47625 -27.31056 -25.85353 -23.84084 -23.13068 -22.97962 -21.26053 -19.85222 -18.59154 -17.71261 -17.44005 -17.24893 -16.94467 -16.66646 -16.16900 -15.58358 -15.26291 -14.87815 -14.85438 -14.17557 -13.70221 -13.56758 -13.31509 -13.02653 -12.87023 -12.81436 -12.44166 -12.37118 -12.29272 -11.98844 -11.63396 -11.42756 -11.41904 -11.11872 -10.80146 -9.52718 -9.10790 -8.55286 -6.56954 -0.00662 0.75048 1.11736 1.33743 1.39649 1.50350 1.77666 2.13130 2.23517 2.44713 2.92179 3.01968 3.62051 3.98412 4.02617 4.14626 4.26966 4.35092 4.35635 4.49035 4.64283 4.87177 4.92897 4.97392 4.99990 5.14673 5.20487 5.41073 5.49664 5.53663 5.60306 5.97455 6.15307 6.26019 6.46762 6.74118 7.03946 7.39196 8.03307 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.008883 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.186053 B = 3151.210070 C = 4845.667801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 O -0.361 6.361 4 C 0.550 3.450 5 O -0.548 6.548 6 C -0.177 4.177 7 N -0.481 5.481 8 C 0.154 3.846 9 C -0.110 4.110 10 C -0.089 4.089 11 C -0.184 4.184 12 C 0.099 3.901 13 N -0.401 5.401 14 C 0.226 3.774 15 C -0.453 4.453 16 H 0.094 0.906 17 C 0.042 3.958 18 N -0.811 5.811 19 Si 0.990 3.010 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.242 1.242 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.145 0.855 32 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 4.121 2.164 4.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 O -0.279 6.279 4 C 0.401 3.599 5 O -0.441 6.441 6 C -0.301 4.301 7 N -0.203 5.203 8 C -0.092 4.092 9 C -0.131 4.131 10 C -0.112 4.112 11 C -0.206 4.206 12 C -0.022 4.022 13 N -0.080 5.080 14 C 0.113 3.887 15 C -0.486 4.486 16 H 0.111 0.889 17 C -0.177 4.177 18 N -0.438 5.438 19 Si 0.808 3.192 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.165 1.165 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.127 0.873 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.195 0.805 30 H 0.193 0.807 31 H 0.163 0.837 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.552 3.774 1.872 4.490 hybrid contribution 1.373 -0.924 -0.074 1.656 sum -0.179 2.851 1.798 3.375 Atomic orbital electron populations 1.21782 0.89787 1.04474 1.03424 1.23286 0.97474 0.79668 1.02021 1.86666 1.23210 1.33151 1.84864 1.19509 0.80206 0.87517 0.72693 1.90717 1.60894 1.42060 1.50417 1.19498 0.90845 0.90423 1.29358 1.69897 1.32602 0.96877 1.20886 1.21109 0.80199 0.95986 1.11886 1.20428 1.01906 0.86263 1.04471 1.21297 0.90733 1.01101 0.98082 1.21073 0.99707 0.92441 1.07382 1.21891 0.91996 0.90143 0.98211 1.42809 1.07713 1.06016 1.51492 1.18616 0.93674 0.81103 0.95285 1.18823 0.95629 1.06566 1.27588 0.88856 1.26900 1.03547 0.95491 0.91727 1.69728 1.30980 1.27840 1.15256 0.85041 0.75415 0.79344 0.79375 1.18713 1.19024 1.16506 0.91501 0.91694 0.87253 0.92025 0.91681 0.82791 0.80543 0.80707 0.83745 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 10.29 71.98 0.74 -2.71 16 2 C 0.05 1.74 6.20 71.98 0.45 2.19 16 3 O -0.36 -17.17 10.23 -58.07 -0.59 -17.77 16 4 C 0.55 30.30 7.94 70.11 0.56 30.86 16 5 O -0.55 -31.21 15.26 19.51 0.30 -30.91 16 6 C -0.18 -10.30 7.10 42.05 0.30 -10.00 16 7 N -0.48 -26.64 11.26 -181.06 -2.04 -28.68 16 8 C 0.15 7.66 7.75 133.91 1.04 8.70 16 9 C -0.11 -4.13 10.11 22.47 0.23 -3.91 16 10 C -0.09 -2.62 10.07 22.32 0.22 -2.40 16 11 C -0.18 -5.83 10.00 22.08 0.22 -5.61 16 12 C 0.10 4.17 9.33 83.37 0.78 4.95 16 13 N -0.40 -20.36 2.89 -343.34 -0.99 -21.35 16 14 C 0.23 12.89 6.21 39.11 0.24 13.13 16 15 C -0.45 -25.01 8.27 22.97 0.19 -24.82 16 16 H 0.09 5.34 7.29 -2.91 -0.02 5.32 16 17 C 0.04 2.01 4.53 85.42 0.39 2.40 16 18 N -0.81 -39.25 10.91 21.92 0.24 -39.01 16 19 Si 0.99 36.35 29.60 68.60 2.03 38.38 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.24 -7.80 7.11 99.48 0.71 -7.09 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 25 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.15 6.00 6.31 -2.91 -0.02 5.98 16 32 H 0.30 12.78 8.30 -92.71 -0.77 12.01 16 Total: -1.00 -72.32 286.05 5.44 -66.88 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.14 Total: 19.69 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.35 Total: 12.78 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -2.79 Total: -89.05 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.30 Total: -48.68 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -72.32 5.44 -66.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036220603.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.908 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds