Wall clock time and date at job start Mon Mar 30 2020 04:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47309 * 335.16361 * 3 2 1 5 5 C 1.36883 * 119.99570 * 137.39389 * 4 3 2 6 6 H 1.07998 * 119.99488 * 227.54111 * 5 4 3 7 7 C 1.39041 * 119.99553 * 47.81830 * 5 4 3 8 8 N 1.31359 * 120.00617 * 358.69194 * 7 5 4 9 9 Si 1.86807 * 119.99686 * 178.69566 * 7 5 4 10 10 H 1.48504 * 109.46955 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46972 * 119.99790 * 9 7 5 12 12 H 1.48493 * 109.47209 * 239.99672 * 9 7 5 13 13 C 1.34773 * 120.00280 * 317.40267 * 4 3 2 14 14 O 1.21591 * 119.99904 * 174.31902 * 13 4 3 15 15 C 1.47756 * 119.99949 * 354.31494 * 13 4 3 16 16 C 1.39556 * 120.08035 * 346.79956 * 15 13 4 17 17 C 1.38703 * 119.91404 * 179.69742 * 16 15 13 18 18 N 1.39701 * 119.95740 * 180.29855 * 17 16 15 19 19 C 1.38871 * 120.08202 * 0.60153 * 17 16 15 20 20 C 1.38884 * 120.16611 * 359.67239 * 19 17 16 21 21 N 1.39695 * 119.96391 * 180.02562 * 20 19 17 22 22 C 1.38698 * 120.07645 * 0.02840 * 20 19 17 23 23 H 1.09001 * 109.46423 * 215.17221 * 3 2 1 24 24 H 1.08997 * 109.47039 * 95.17199 * 3 2 1 25 25 H 0.96993 * 120.00609 * 180.02562 * 8 7 5 26 26 H 1.07995 * 120.04587 * 0.02562 * 16 15 13 27 27 H 0.97003 * 119.99842 * 180.30174 * 18 17 16 28 28 H 0.97000 * 120.00368 * 0.29796 * 18 17 16 29 29 H 1.08000 * 119.92415 * 179.70210 * 19 17 16 30 30 H 0.96999 * 120.00357 * 179.97438 * 21 20 19 31 31 H 0.96998 * 120.00145 * 359.97438 * 21 20 19 32 32 H 1.07999 * 120.03664 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0970 -1.2526 0.5801 5 6 4.1481 -1.9107 0.0007 6 1 4.0858 -2.9736 -0.1804 7 6 5.2979 -1.2118 -0.3495 8 7 5.3658 0.0845 -0.1478 9 14 6.7464 -2.1163 -1.1069 10 1 6.4201 -3.5600 -1.2275 11 1 7.0292 -1.5579 -2.4536 12 1 7.9413 -1.9499 -0.2411 13 6 2.5119 -1.7575 1.6842 14 8 2.8479 -2.8473 2.1060 15 6 1.4620 -0.9868 2.3821 16 6 1.2646 0.3608 2.0779 17 6 0.2740 1.0793 2.7307 18 7 0.0714 2.4267 2.4224 19 6 -0.5126 0.4627 3.6948 20 6 -0.3153 -0.8768 4.0044 21 7 -1.1093 -1.4930 4.9746 22 6 0.6693 -1.6034 3.3513 23 1 2.9709 0.8409 0.5920 24 1 2.9713 0.0935 -1.0235 25 1 6.1678 0.5721 -0.3924 26 1 1.8788 0.8422 1.3314 27 1 -0.6183 2.9310 2.8816 28 1 0.6205 2.8581 1.7491 29 1 -1.2800 1.0259 4.2050 30 1 -0.9722 -2.4286 5.1909 31 1 -1.7977 -0.9853 5.4319 32 1 0.8225 -2.6448 3.5928 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040295838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:22 Heat of formation + Delta-G solvation = 86.421509 kcal Electronic energy + Delta-G solvation = -19354.020628 eV Core-core repulsion = 16317.177220 eV Total energy + Delta-G solvation = -3036.843408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20144 -37.92824 -36.51619 -34.93109 -34.52674 -32.80065 -31.75374 -29.08945 -28.16387 -27.00493 -25.25295 -22.69939 -21.50817 -19.66527 -17.81549 -17.41588 -16.85670 -16.33881 -16.22215 -15.65637 -14.94594 -14.64089 -14.39027 -13.93434 -13.73492 -13.34586 -13.00366 -12.78644 -12.49497 -11.95834 -11.89420 -11.48334 -11.43476 -11.14237 -11.01180 -10.82329 -10.74567 -10.38241 -10.16750 -9.15961 -8.99051 -8.61743 -7.64310 -7.51880 -6.78502 -6.49319 -4.22937 1.67623 2.19351 3.15078 3.23591 3.28060 3.38132 3.61675 3.89038 3.97574 4.12808 4.33376 4.56453 4.72042 4.83112 5.16691 5.42779 5.59076 5.78163 5.99305 6.10095 6.14467 6.27299 6.49907 6.68416 6.74174 7.01008 7.07411 7.45672 7.66687 7.90254 8.02631 8.06775 8.19776 8.27709 8.37317 9.03843 9.14634 9.82292 10.61033 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.006809 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.642057 B = 4111.035392 C = 4673.366189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.204 3.796 3 C 0.208 3.792 4 N -0.435 5.435 5 C -0.312 4.312 6 H 0.093 0.907 7 C 0.046 3.954 8 N -0.880 5.880 9 Si 0.928 3.072 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.513 3.487 14 O -0.559 6.559 15 C -0.029 4.029 16 C -0.257 4.257 17 C 0.254 3.746 18 N -0.876 5.876 19 C -0.262 4.262 20 C 0.241 3.759 21 N -0.881 5.881 22 C -0.196 4.196 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.273 0.727 26 H 0.166 0.834 27 H 0.393 0.607 28 H 0.396 0.604 29 H 0.111 0.889 30 H 0.396 0.604 31 H 0.392 0.608 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 5.524 4.302 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.110 4.110 3 C 0.082 3.918 4 N -0.156 5.156 5 C -0.440 4.440 6 H 0.111 0.889 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.754 3.246 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.302 3.698 14 O -0.441 6.441 15 C -0.035 4.035 16 C -0.281 4.281 17 C 0.148 3.852 18 N -0.415 5.415 19 C -0.290 4.290 20 C 0.136 3.864 21 N -0.421 5.421 22 C -0.221 4.221 23 H 0.128 0.872 24 H 0.134 0.866 25 H 0.083 0.917 26 H 0.182 0.818 27 H 0.220 0.780 28 H 0.224 0.776 29 H 0.129 0.871 30 H 0.224 0.776 31 H 0.219 0.781 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.585 5.088 4.395 10.904 hybrid contribution 0.867 0.065 -0.067 0.872 sum -7.718 5.152 4.327 10.239 Atomic orbital electron populations 1.81123 1.13195 1.06353 1.12348 1.29467 0.96391 0.94897 0.90296 1.19565 0.77938 0.91330 1.02969 1.43095 1.29610 1.20840 1.22092 1.19454 0.91216 0.94303 1.39044 0.88895 1.25621 0.98271 0.95712 0.96314 1.69742 1.29485 1.06865 1.45564 0.85840 0.80579 0.79993 0.78193 1.19029 1.20583 1.20463 1.18366 0.83678 0.86952 0.80808 1.90607 1.65774 1.21302 1.66379 1.19721 0.94956 0.93070 0.95739 1.22108 1.03761 0.95492 1.06731 1.17158 0.92288 0.84105 0.91620 1.42331 1.42940 1.08804 1.47427 1.19822 1.07498 0.94440 1.07220 1.17243 0.89907 0.91000 0.88236 1.42358 1.40958 1.14191 1.44579 1.20333 0.99493 1.00393 1.01902 0.87194 0.86626 0.91702 0.81803 0.78018 0.77639 0.87146 0.77583 0.78051 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.14 17.09 40.88 0.70 -8.45 16 2 C 0.20 4.01 10.19 -20.76 -0.21 3.80 16 3 C 0.21 4.21 4.19 -6.83 -0.03 4.18 16 4 N -0.44 -10.64 2.78 -127.83 -0.36 -10.99 16 5 C -0.31 -8.13 8.71 -15.00 -0.13 -8.26 16 6 H 0.09 2.53 7.81 -52.49 -0.41 2.12 16 7 C 0.05 1.14 5.29 -17.46 -0.09 1.04 16 8 N -0.88 -21.37 11.87 55.50 0.66 -20.71 16 9 Si 0.93 19.52 29.55 -169.99 -5.02 14.49 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.51 12.96 7.24 -12.37 -0.09 12.87 16 14 O -0.56 -15.78 16.37 5.29 0.09 -15.70 16 15 C -0.03 -0.64 5.06 -105.02 -0.53 -1.17 16 16 C -0.26 -4.91 5.43 -38.92 -0.21 -5.13 16 17 C 0.25 4.22 6.35 -83.87 -0.53 3.69 16 18 N -0.88 -11.11 9.09 32.37 0.29 -10.81 16 19 C -0.26 -4.19 9.72 -39.11 -0.38 -4.57 16 20 C 0.24 4.03 6.74 -83.87 -0.57 3.46 16 21 N -0.88 -10.93 9.09 32.37 0.29 -10.64 16 22 C -0.20 -3.92 9.43 -38.92 -0.37 -4.29 16 23 H 0.11 2.13 6.20 -51.93 -0.32 1.80 16 24 H 0.12 2.30 7.55 -51.93 -0.39 1.91 16 25 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 26 H 0.17 3.04 2.55 -74.24 -0.19 2.85 16 27 H 0.39 3.98 8.84 -40.82 -0.36 3.62 16 28 H 0.40 4.58 8.84 -40.82 -0.36 4.22 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.40 4.37 8.84 -40.82 -0.36 4.01 16 31 H 0.39 3.84 8.84 -40.82 -0.36 3.48 16 32 H 0.12 2.49 7.70 -52.49 -0.40 2.09 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -31.02 279.05 -5.00 -36.02 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -2.72 Total: 16.96 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -3.14 Total: 5.62 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 1.59 Total: -61.60 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.02 -5.00 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040295838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.444 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds