Wall clock time and date at job start Mon Mar 30 2020 04:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47309 * 335.16361 * 3 2 1 5 5 C 1.36883 * 119.99570 * 137.39389 * 4 3 2 6 6 H 1.07998 * 119.99488 * 227.54111 * 5 4 3 7 7 C 1.39041 * 119.99553 * 47.81830 * 5 4 3 8 8 N 1.31359 * 120.00617 * 358.69194 * 7 5 4 9 9 Si 1.86807 * 119.99686 * 178.69566 * 7 5 4 10 10 H 1.48504 * 109.46955 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46972 * 119.99790 * 9 7 5 12 12 H 1.48493 * 109.47209 * 239.99672 * 9 7 5 13 13 C 1.34773 * 120.00280 * 317.40267 * 4 3 2 14 14 O 1.21591 * 119.99904 * 174.31902 * 13 4 3 15 15 C 1.47756 * 119.99949 * 354.31494 * 13 4 3 16 16 C 1.39556 * 120.08035 * 346.79956 * 15 13 4 17 17 C 1.38703 * 119.91404 * 179.69742 * 16 15 13 18 18 N 1.39701 * 119.95740 * 180.29855 * 17 16 15 19 19 C 1.38871 * 120.08202 * 0.60153 * 17 16 15 20 20 C 1.38884 * 120.16611 * 359.67239 * 19 17 16 21 21 N 1.39695 * 119.96391 * 180.02562 * 20 19 17 22 22 C 1.38698 * 120.07645 * 0.02840 * 20 19 17 23 23 H 1.09001 * 109.46423 * 215.17221 * 3 2 1 24 24 H 1.08997 * 109.47039 * 95.17199 * 3 2 1 25 25 H 0.96993 * 120.00609 * 180.02562 * 8 7 5 26 26 H 1.07995 * 120.04587 * 0.02562 * 16 15 13 27 27 H 0.97003 * 119.99842 * 180.30174 * 18 17 16 28 28 H 0.97000 * 120.00368 * 0.29796 * 18 17 16 29 29 H 1.08000 * 119.92415 * 179.70210 * 19 17 16 30 30 H 0.96999 * 120.00357 * 179.97438 * 21 20 19 31 31 H 0.96998 * 120.00145 * 359.97438 * 21 20 19 32 32 H 1.07999 * 120.03664 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0970 -1.2526 0.5801 5 6 4.1481 -1.9107 0.0007 6 1 4.0858 -2.9736 -0.1804 7 6 5.2979 -1.2118 -0.3495 8 7 5.3658 0.0845 -0.1478 9 14 6.7464 -2.1163 -1.1069 10 1 6.4201 -3.5600 -1.2275 11 1 7.0292 -1.5579 -2.4536 12 1 7.9413 -1.9499 -0.2411 13 6 2.5119 -1.7575 1.6842 14 8 2.8479 -2.8473 2.1060 15 6 1.4620 -0.9868 2.3821 16 6 1.2646 0.3608 2.0779 17 6 0.2740 1.0793 2.7307 18 7 0.0714 2.4267 2.4224 19 6 -0.5126 0.4627 3.6948 20 6 -0.3153 -0.8768 4.0044 21 7 -1.1093 -1.4930 4.9746 22 6 0.6693 -1.6034 3.3513 23 1 2.9709 0.8409 0.5920 24 1 2.9713 0.0935 -1.0235 25 1 6.1678 0.5721 -0.3924 26 1 1.8788 0.8422 1.3314 27 1 -0.6183 2.9310 2.8816 28 1 0.6205 2.8581 1.7491 29 1 -1.2800 1.0259 4.2050 30 1 -0.9722 -2.4286 5.1909 31 1 -1.7977 -0.9853 5.4319 32 1 0.8225 -2.6448 3.5928 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040295838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:21 Heat of formation + Delta-G solvation = 62.619130 kcal Electronic energy + Delta-G solvation = -19355.052776 eV Core-core repulsion = 16317.177220 eV Total energy + Delta-G solvation = -3037.875556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.80268 -39.49952 -38.19019 -36.37763 -36.13648 -34.29397 -33.49967 -30.48049 -29.70579 -28.47899 -27.08360 -24.30106 -22.85300 -21.31318 -19.62020 -18.94103 -18.16816 -17.84298 -17.68571 -16.89423 -16.79926 -16.17121 -15.89503 -15.55178 -15.42713 -14.76599 -14.55354 -14.38548 -13.93935 -13.63350 -13.60688 -13.16311 -13.01958 -12.79831 -12.63104 -12.45092 -12.11581 -12.04910 -11.75621 -10.84812 -10.62693 -10.50620 -9.52495 -8.76291 -8.39243 -8.08519 -6.20479 0.16576 0.81021 1.47539 1.50740 1.60940 1.73390 2.03878 2.19404 2.36724 2.79182 2.93027 3.03814 3.13338 3.24811 3.41833 3.91586 4.19526 4.36219 4.56206 4.61162 4.77919 4.82028 4.91445 5.31858 5.37936 5.48546 5.57204 5.72791 6.24748 6.46805 6.55299 6.68400 6.69050 7.06215 7.10701 7.12346 7.23213 7.91595 8.71175 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.006809 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.642057 B = 4111.035392 C = 4673.366189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.219 3.781 3 C 0.218 3.782 4 N -0.442 5.442 5 C -0.349 4.349 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.886 5.886 9 Si 0.987 3.013 10 H -0.276 1.276 11 H -0.260 1.260 12 H -0.277 1.277 13 C 0.496 3.504 14 O -0.609 6.609 15 C -0.052 4.052 16 C -0.270 4.270 17 C 0.260 3.740 18 N -0.858 5.858 19 C -0.262 4.262 20 C 0.251 3.749 21 N -0.863 5.863 22 C -0.225 4.225 23 H 0.124 0.876 24 H 0.119 0.881 25 H 0.282 0.718 26 H 0.167 0.833 27 H 0.409 0.591 28 H 0.403 0.597 29 H 0.146 0.854 30 H 0.404 0.596 31 H 0.409 0.591 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 7.708 4.657 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.096 4.096 3 C 0.093 3.907 4 N -0.162 5.162 5 C -0.477 4.477 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.522 5.522 9 Si 0.810 3.190 10 H -0.201 1.201 11 H -0.185 1.185 12 H -0.203 1.203 13 C 0.287 3.713 14 O -0.495 6.495 15 C -0.058 4.058 16 C -0.294 4.294 17 C 0.152 3.848 18 N -0.398 5.398 19 C -0.290 4.290 20 C 0.144 3.856 21 N -0.403 5.403 22 C -0.251 4.251 23 H 0.141 0.859 24 H 0.137 0.863 25 H 0.092 0.908 26 H 0.183 0.817 27 H 0.239 0.761 28 H 0.232 0.768 29 H 0.164 0.836 30 H 0.233 0.767 31 H 0.240 0.760 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.605 7.345 4.751 12.992 hybrid contribution 1.100 -0.552 -0.100 1.235 sum -8.506 6.793 4.650 11.837 Atomic orbital electron populations 1.81107 1.13216 1.06444 1.12923 1.29098 0.95934 0.94674 0.89859 1.19539 0.78331 0.89842 1.03005 1.43253 1.29331 1.21681 1.21890 1.19391 0.93272 0.93853 1.41200 0.91511 1.26214 0.99629 0.96479 0.96093 1.69758 1.30301 1.07270 1.44837 0.84980 0.77370 0.78378 0.78239 1.20114 1.18504 1.20304 1.19087 0.84470 0.86848 0.80935 1.90540 1.67670 1.23489 1.67796 1.19509 0.95198 0.94098 0.96970 1.22021 1.05066 0.94624 1.07726 1.17232 0.91172 0.85431 0.90936 1.42280 1.43048 1.07286 1.47141 1.20187 1.07830 0.94164 1.06832 1.17260 0.89003 0.91317 0.88067 1.42303 1.40221 1.14727 1.43090 1.20310 1.01386 1.00161 1.03220 0.85900 0.86337 0.90822 0.81713 0.76061 0.76763 0.83588 0.76733 0.76012 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.11 17.09 15.96 0.27 -17.84 16 2 C 0.22 8.51 10.19 89.44 0.91 9.43 16 3 C 0.22 8.88 4.19 84.57 0.35 9.23 16 4 N -0.44 -22.38 2.78 -676.59 -1.88 -24.26 16 5 C -0.35 -18.91 8.71 84.10 0.73 -18.18 16 6 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 7 C 0.02 1.03 5.29 84.96 0.45 1.48 16 8 N -0.89 -42.50 11.87 21.68 0.26 -42.24 16 9 Si 0.99 40.02 29.55 68.60 2.03 42.05 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 12 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.50 26.30 7.24 86.76 0.63 26.93 16 14 O -0.61 -36.74 16.37 -4.00 -0.07 -36.81 16 15 C -0.05 -2.33 5.06 -20.12 -0.10 -2.43 16 16 C -0.27 -10.13 5.43 22.70 0.12 -10.01 16 17 C 0.26 7.99 6.35 38.15 0.24 8.23 16 18 N -0.86 -18.71 9.09 -51.50 -0.47 -19.18 16 19 C -0.26 -7.52 9.72 22.58 0.22 -7.30 16 20 C 0.25 7.95 6.74 38.15 0.26 8.21 16 21 N -0.86 -19.28 9.09 -51.50 -0.47 -19.75 16 22 C -0.23 -9.17 9.43 22.70 0.21 -8.96 16 23 H 0.12 4.70 6.20 -2.39 -0.01 4.69 16 24 H 0.12 4.72 7.55 -2.39 -0.02 4.70 16 25 H 0.28 12.51 8.31 -92.71 -0.77 11.74 16 26 H 0.17 5.98 2.55 -23.35 -0.06 5.92 16 27 H 0.41 6.50 8.84 -92.71 -0.82 5.68 16 28 H 0.40 8.00 8.84 -92.71 -0.82 7.18 16 29 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.40 8.23 8.84 -92.71 -0.82 7.41 16 31 H 0.41 6.52 8.84 -92.71 -0.82 5.70 16 32 H 0.11 4.54 7.70 -2.91 -0.02 4.52 16 Total: -1.00 -68.89 279.05 1.62 -67.27 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -2.09 Total: 34.13 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 4.03 Total: 16.63 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -2.29 Total: -123.26 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.07 Total: -36.81 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -68.89 1.62 -67.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040295838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.889 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds