Wall clock time and date at job start Mon Mar 30 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 119.99733 * 2 1 4 4 H 1.48503 * 109.46690 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47028 * 299.99944 * 3 2 1 6 6 H 1.48496 * 109.47104 * 60.00098 * 3 2 1 7 7 C 1.38946 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99998 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99431 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99891 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47118 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00388 * 179.97438 * 13 12 10 15 15 H 1.09004 * 115.55559 * 350.68798 * 14 13 12 16 16 C 1.53069 * 117.49653 * 136.39693 * 14 13 12 17 17 C 1.52995 * 117.49996 * 205.00050 * 14 13 12 18 18 H 1.08999 * 117.50445 * 0.02562 * 17 14 13 19 19 C 1.50706 * 117.49785 * 145.02160 * 17 14 13 20 20 C 1.38233 * 120.00109 * 59.63524 * 19 17 14 21 21 C 1.38237 * 119.99743 * 179.80918 * 20 19 17 22 22 C 1.38234 * 120.00105 * 0.42118 * 21 20 19 23 23 C 1.38237 * 120.00029 * 359.81331 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.97438 * 23 22 21 25 25 H 0.97002 * 120.00195 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00276 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47607 * 59.99345 * 12 10 9 28 28 H 1.08995 * 109.47287 * 299.99405 * 12 10 9 29 29 H 1.00905 * 110.99987 * 303.95169 * 13 12 10 30 30 H 1.08999 * 117.49542 * 0.02562 * 16 14 13 31 31 H 1.09005 * 117.51564 * 214.96818 * 16 14 13 32 32 H 1.08004 * 119.99934 * 0.02562 * 20 19 17 33 33 H 1.07998 * 119.99890 * 180.21171 * 21 20 19 34 34 H 1.08001 * 120.00332 * 179.78788 * 22 21 20 35 35 H 1.08000 * 120.00539 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1985 -5.9794 -0.0027 14 6 1.4982 -7.2708 -0.0026 15 1 0.4211 -7.2217 0.1569 16 6 2.0254 -8.3606 -0.9394 17 6 2.2429 -8.4782 0.5704 18 1 3.2523 -8.3144 0.9479 19 6 1.4310 -9.5086 1.3122 20 6 0.4028 -10.1722 0.6693 21 6 -0.3394 -11.1202 1.3486 22 6 -0.0590 -11.3983 2.6733 23 6 0.9661 -10.7313 3.3176 24 6 1.7111 -9.7865 2.6371 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0016 27 1 0.6175 -4.9205 -0.8923 28 1 0.6170 -4.9209 0.8875 29 1 2.8333 -5.9120 -0.7841 30 1 2.8918 -8.1191 -1.5551 31 1 1.2951 -9.0285 -1.3963 32 1 0.1816 -9.9524 -0.3648 33 1 -1.1405 -11.6410 0.8453 34 1 -0.6410 -12.1365 3.2050 35 1 1.1850 -10.9483 4.3527 36 1 2.5117 -9.2650 3.1406 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044677218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:13 Heat of formation + Delta-G solvation = 13.408406 kcal Electronic energy + Delta-G solvation = -17904.363256 eV Core-core repulsion = 14967.894106 eV Total energy + Delta-G solvation = -2936.469150 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.76267 -38.33626 -37.22208 -34.08455 -33.15272 -31.21824 -31.04912 -30.26795 -26.46689 -24.08984 -23.81275 -22.50744 -21.40658 -20.26570 -19.25806 -17.91426 -17.22064 -16.24988 -15.57696 -15.24203 -14.99941 -14.65587 -14.48699 -13.95366 -13.87568 -13.49756 -13.16296 -13.01067 -12.57362 -12.37697 -11.96195 -11.62980 -11.52557 -11.31891 -11.12219 -11.04835 -10.86348 -10.38123 -10.34062 -10.22283 -9.52407 -9.03788 -8.82535 -8.37277 -7.98196 -7.87843 -6.41925 -3.82782 1.21514 1.28850 3.16477 3.27073 3.34416 3.51576 3.89129 3.98660 4.05495 4.24981 4.67230 4.75831 4.85908 4.92794 4.99647 5.05838 5.16997 5.20019 5.29088 5.37598 5.50402 5.60317 5.74884 5.85322 5.89754 5.95537 5.97883 6.08175 6.27129 6.37536 6.39890 6.58079 6.89167 7.21852 7.55395 7.61126 8.06155 8.60731 9.17606 9.53773 10.04966 10.75870 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.041034 B = 0.003091 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.194380 B = 9057.839629 C = 9201.989343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.052 3.948 13 N -0.637 5.637 14 C 0.047 3.953 15 H 0.110 0.890 16 C -0.200 4.200 17 C -0.113 4.113 18 H 0.117 0.883 19 C -0.042 4.042 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.271 0.729 26 H 0.393 0.607 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.353 0.647 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -20.069 1.451 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.268 5.268 14 C -0.065 4.065 15 H 0.128 0.872 16 C -0.239 4.239 17 C -0.133 4.133 18 H 0.135 0.865 19 C -0.042 4.042 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.130 4.130 25 H 0.081 0.919 26 H 0.226 0.774 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.174 0.826 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.951 -19.837 2.122 20.045 hybrid contribution -0.602 0.778 -0.817 1.279 sum -2.553 -19.059 1.306 19.273 Atomic orbital electron populations 1.69621 1.05948 1.28074 1.50646 1.25269 0.95641 0.99744 0.97314 0.85796 0.79723 0.81102 0.77707 1.19199 1.20765 1.20719 1.19758 0.93411 0.82198 1.47474 0.87849 1.41865 1.09227 1.04589 1.64289 1.19781 0.88368 0.84707 0.84543 1.90525 1.13753 1.87067 1.55457 1.21720 0.94301 0.90602 1.01427 1.59710 1.18071 0.98673 1.50384 1.22553 0.96507 0.85676 1.01740 0.87233 1.23655 1.04070 1.03765 0.92426 1.21350 1.00423 0.97192 0.94293 0.86455 1.19222 0.95426 0.95721 0.93824 1.21079 0.95994 0.97041 1.00116 1.21104 0.99628 0.98116 0.94831 1.21119 0.98263 1.00439 0.95083 1.21142 0.96000 0.96657 0.99827 1.21040 1.00183 0.97876 0.93920 0.91908 0.77425 0.93490 0.89401 0.82557 0.88147 0.88453 0.86006 0.86265 0.86363 0.86143 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 10 C 0.44 10.52 7.82 -10.99 -0.09 10.43 16 11 O -0.58 -16.02 15.78 5.55 0.09 -15.94 16 12 C 0.05 0.93 6.02 -4.98 -0.03 0.90 16 13 N -0.64 -10.58 6.40 -107.96 -0.69 -11.27 16 14 C 0.05 0.61 5.95 -67.68 -0.40 0.21 16 15 H 0.11 1.38 7.90 -51.93 -0.41 0.97 16 16 C -0.20 -2.17 9.56 -26.70 -0.26 -2.42 16 17 C -0.11 -1.37 5.97 -91.77 -0.55 -1.91 16 18 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 19 C -0.04 -0.48 5.61 -104.62 -0.59 -1.07 16 20 C -0.12 -1.29 9.29 -39.58 -0.37 -1.66 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.11 -1.25 9.74 -39.58 -0.39 -1.63 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.35 5.94 8.22 -39.29 -0.32 5.62 16 30 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 31 H 0.10 0.90 6.19 -51.93 -0.32 0.58 16 32 H 0.12 1.10 6.03 -52.48 -0.32 0.78 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -31.35 313.11 -8.92 -40.27 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -4.58 Total: 14.36 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -4.10 Total: -9.89 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.03 Total: -49.62 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.35 -8.92 -40.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044677218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.678 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds