Wall clock time and date at job start Mon Mar 30 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 119.99733 * 2 1 4 4 H 1.48503 * 109.46690 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47028 * 299.99944 * 3 2 1 6 6 H 1.48496 * 109.47104 * 60.00098 * 3 2 1 7 7 C 1.38946 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99998 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99431 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99891 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47118 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00388 * 179.97438 * 13 12 10 15 15 H 1.09004 * 115.55559 * 350.68798 * 14 13 12 16 16 C 1.53069 * 117.49653 * 136.39693 * 14 13 12 17 17 C 1.52995 * 117.49996 * 205.00050 * 14 13 12 18 18 H 1.08999 * 117.50445 * 0.02562 * 17 14 13 19 19 C 1.50706 * 117.49785 * 145.02160 * 17 14 13 20 20 C 1.38233 * 120.00109 * 59.63524 * 19 17 14 21 21 C 1.38237 * 119.99743 * 179.80918 * 20 19 17 22 22 C 1.38234 * 120.00105 * 0.42118 * 21 20 19 23 23 C 1.38237 * 120.00029 * 359.81331 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.97438 * 23 22 21 25 25 H 0.97002 * 120.00195 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00276 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47607 * 59.99345 * 12 10 9 28 28 H 1.08995 * 109.47287 * 299.99405 * 12 10 9 29 29 H 1.00905 * 110.99987 * 303.95169 * 13 12 10 30 30 H 1.08999 * 117.49542 * 0.02562 * 16 14 13 31 31 H 1.09005 * 117.51564 * 214.96818 * 16 14 13 32 32 H 1.08004 * 119.99934 * 0.02562 * 20 19 17 33 33 H 1.07998 * 119.99890 * 180.21171 * 21 20 19 34 34 H 1.08001 * 120.00332 * 179.78788 * 22 21 20 35 35 H 1.08000 * 120.00539 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1985 -5.9794 -0.0027 14 6 1.4982 -7.2708 -0.0026 15 1 0.4211 -7.2217 0.1569 16 6 2.0254 -8.3606 -0.9394 17 6 2.2429 -8.4782 0.5704 18 1 3.2523 -8.3144 0.9479 19 6 1.4310 -9.5086 1.3122 20 6 0.4028 -10.1722 0.6693 21 6 -0.3394 -11.1202 1.3486 22 6 -0.0590 -11.3983 2.6733 23 6 0.9661 -10.7313 3.3176 24 6 1.7111 -9.7865 2.6371 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0016 27 1 0.6175 -4.9205 -0.8923 28 1 0.6170 -4.9209 0.8875 29 1 2.8333 -5.9120 -0.7841 30 1 2.8918 -8.1191 -1.5551 31 1 1.2951 -9.0285 -1.3963 32 1 0.1816 -9.9524 -0.3648 33 1 -1.1405 -11.6410 0.8453 34 1 -0.6410 -12.1365 3.2050 35 1 1.1850 -10.9483 4.3527 36 1 2.5117 -9.2650 3.1406 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044677218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:12 Heat of formation + Delta-G solvation = -7.050265 kcal Electronic energy + Delta-G solvation = -17905.250410 eV Core-core repulsion = 14967.894106 eV Total energy + Delta-G solvation = -2937.356304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64410 -40.08484 -38.29906 -36.04103 -34.50554 -33.25629 -31.78936 -31.14334 -28.16256 -25.83704 -24.67339 -23.27567 -22.42554 -21.26105 -20.98529 -19.93701 -18.05604 -17.84795 -16.87170 -16.54874 -16.36917 -15.89743 -15.81045 -15.40164 -15.29900 -14.47161 -14.27515 -14.18123 -13.83010 -13.67782 -13.50865 -13.09605 -12.88633 -12.73677 -12.42220 -12.13837 -12.10514 -11.97172 -11.76879 -11.53008 -11.28169 -10.39419 -10.03473 -9.78615 -9.64081 -9.02523 -8.48108 -5.97146 0.44545 0.53915 1.36107 1.41627 1.55988 2.02095 2.27821 2.65106 2.84952 3.15206 3.18980 3.44493 3.82995 3.96258 4.04557 4.09117 4.19373 4.25169 4.30528 4.35374 4.48036 4.57493 4.64725 4.73762 4.76427 4.93120 5.12243 5.21890 5.23252 5.40044 5.62912 5.66547 5.77774 5.89173 6.08970 6.16297 6.32742 6.57979 7.10747 7.53556 8.08635 8.69514 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.041034 B = 0.003091 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.194380 B = 9057.839629 C = 9201.989343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.068 3.932 13 N -0.654 5.654 14 C 0.033 3.967 15 H 0.118 0.882 16 C -0.179 4.179 17 C -0.113 4.113 18 H 0.102 0.898 19 C -0.059 4.059 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.126 4.126 24 C -0.133 4.133 25 H 0.278 0.722 26 H 0.397 0.603 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.348 0.652 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -21.134 1.248 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.511 6.511 12 C -0.064 4.064 13 N -0.285 5.285 14 C -0.078 4.078 15 H 0.136 0.864 16 C -0.217 4.217 17 C -0.133 4.133 18 H 0.121 0.879 19 C -0.060 4.060 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.151 4.151 25 H 0.088 0.912 26 H 0.231 0.769 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.169 0.831 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.298 -20.925 1.923 21.271 hybrid contribution -0.203 1.012 -0.724 1.261 sum -3.501 -19.913 1.199 20.254 Atomic orbital electron populations 1.69676 1.06837 1.29312 1.50230 1.26055 0.96562 1.02441 0.96177 0.84861 0.78011 0.77014 0.78389 1.19820 1.19454 1.19572 1.19707 0.92707 0.84004 1.49986 0.90349 1.41927 1.09372 1.04683 1.64880 1.20826 0.88222 0.86149 0.82334 1.90491 1.15877 1.87967 1.56772 1.21558 0.93913 0.87723 1.03240 1.59694 1.18444 0.99768 1.50615 1.22582 0.96734 0.84413 1.04068 0.86385 1.23715 1.04160 1.02124 0.91742 1.21287 0.99692 0.96849 0.95453 0.87940 1.19278 0.96279 0.96285 0.94121 1.21282 0.95678 0.97113 1.00851 1.21452 0.99879 0.97720 0.95043 1.21480 0.97961 1.00453 0.95301 1.21411 0.95963 0.96244 1.00748 1.21197 1.00818 0.98803 0.94259 0.91230 0.76895 0.90915 0.87973 0.83130 0.87972 0.86256 0.84690 0.83904 0.83985 0.84458 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.70 5.29 -306.99 -1.62 -31.33 16 10 C 0.44 21.19 7.82 87.65 0.69 21.88 16 11 O -0.62 -35.30 15.78 -3.06 -0.05 -35.35 16 12 C 0.07 2.38 6.02 85.55 0.51 2.90 16 13 N -0.65 -21.51 6.40 -495.48 -3.17 -24.68 16 14 C 0.03 0.81 5.95 44.94 0.27 1.08 16 15 H 0.12 2.75 7.90 -2.38 -0.02 2.73 16 16 C -0.18 -3.57 9.56 30.62 0.29 -3.28 16 17 C -0.11 -2.67 5.97 -11.54 -0.07 -2.74 16 18 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 19 C -0.06 -1.32 5.61 -19.86 -0.11 -1.43 16 20 C -0.13 -2.46 9.29 22.27 0.21 -2.25 16 21 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 23 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 24 C -0.13 -2.90 9.74 22.27 0.22 -2.68 16 25 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 26 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 29 H 0.35 11.78 8.22 -89.69 -0.74 11.05 16 30 H 0.10 2.02 8.09 -2.39 -0.02 2.00 16 31 H 0.12 1.86 6.19 -2.38 -0.01 1.84 16 32 H 0.14 2.05 6.03 -2.91 -0.02 2.04 16 33 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -67.84 313.11 1.06 -66.78 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.36 Total: 39.84 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 3.96 Total: -10.91 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.51 Total: -105.54 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.05 Total: -35.35 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.84 1.06 -66.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044677218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.730 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds