Wall clock time and date at job start Mon Mar 30 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36625 * 119.96892 * 2 1 4 4 C 1.39874 * 119.94022 * 180.27307 * 3 2 1 5 5 C 1.47385 * 120.06497 * 179.74378 * 4 3 2 6 6 O 1.21525 * 119.99743 * 359.97438 * 5 4 3 7 7 O 1.34769 * 120.00381 * 179.97438 * 5 4 3 8 8 C 1.39914 * 119.87260 * 359.71932 * 4 3 2 9 9 C 1.36582 * 119.93880 * 0.02562 * 8 4 3 10 10 C 1.39350 * 119.97227 * 179.72120 * 2 1 3 11 11 N 1.38745 * 119.93709 * 359.97438 * 10 2 1 12 12 C 1.36774 * 119.99750 * 89.72572 * 11 10 2 13 13 H 1.08000 * 120.00165 * 188.20222 * 12 11 10 14 14 C 1.38890 * 119.99833 * 8.21025 * 12 11 10 15 15 N 1.31509 * 120.00273 * 13.38370 * 14 12 11 16 16 Si 1.86804 * 119.99705 * 193.38874 * 14 12 11 17 17 H 1.48497 * 109.47336 * 89.99623 * 16 14 12 18 18 H 1.48494 * 109.47068 * 209.99662 * 16 14 12 19 19 H 1.48499 * 109.47024 * 329.99652 * 16 14 12 20 20 C 1.46497 * 120.00252 * 269.73018 * 11 10 2 21 21 C 1.47199 * 109.47131 * 95.50153 * 20 11 10 22 22 N 4.13707 * 47.46542 * 140.79203 * 2 1 3 23 23 H 1.09006 * 109.46786 * 270.27944 * 1 2 3 24 24 H 1.08998 * 109.47566 * 30.27672 * 1 2 3 25 25 H 1.09004 * 109.47407 * 150.28461 * 1 2 3 26 26 H 1.08001 * 120.03118 * 359.97438 * 3 2 1 27 27 H 0.96695 * 117.00244 * 179.97438 * 7 5 4 28 28 H 1.07999 * 120.02981 * 179.97438 * 8 4 3 29 29 H 1.08005 * 119.96861 * 179.97438 * 9 8 4 30 30 H 0.96997 * 120.00080 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47125 * 335.50301 * 20 11 10 32 32 H 1.08999 * 109.47428 * 215.50076 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1836 0.0000 4 6 3.5882 1.1829 -0.0058 5 6 4.3271 2.4581 -0.0115 6 8 3.7212 3.5115 -0.0117 7 8 5.6748 2.4560 -0.0165 8 6 4.2844 -0.0307 -0.0056 9 6 3.5971 -1.2109 -0.0003 10 6 2.2031 -1.2071 0.0059 11 7 1.5075 -2.4076 0.0123 12 6 1.1593 -3.0024 -1.1691 13 1 0.5065 -3.8628 -1.1687 14 6 1.6454 -2.5001 -2.3693 15 7 2.6345 -1.6335 -2.3670 16 14 0.8939 -3.0554 -3.9869 17 1 -0.2269 -2.1507 -4.3484 18 1 1.9270 -3.0139 -5.0527 19 1 0.3840 -4.4429 -3.8453 20 6 1.1459 -3.0379 1.2843 21 6 -0.2285 -2.6563 1.6478 22 7 -1.2899 -2.3621 1.9271 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6494 2.1189 -0.0004 27 1 6.1152 3.3168 -0.0206 28 1 5.3644 -0.0342 -0.0105 29 1 4.1341 -2.1480 -0.0006 30 1 2.9737 -1.2824 -3.2051 31 1 1.8330 -2.7060 2.0626 32 1 1.2074 -4.1215 1.1833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050545765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:38 Heat of formation + Delta-G solvation = -10.912943 kcal Electronic energy + Delta-G solvation = -19258.552882 eV Core-core repulsion = 16185.195984 eV Total energy + Delta-G solvation = -3073.356897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84428 -38.68806 -36.28930 -35.62380 -34.91247 -32.00623 -31.65370 -29.74828 -27.10427 -26.19844 -24.66378 -22.29984 -20.96811 -20.11365 -17.89300 -17.38908 -17.10916 -16.43575 -15.58362 -15.10633 -14.58740 -14.40282 -14.00934 -13.54695 -13.45126 -12.82879 -12.70758 -12.46898 -12.31976 -12.01967 -11.68044 -11.39756 -11.32302 -11.11501 -10.98939 -10.97991 -10.72586 -10.39575 -10.35607 -10.17060 -9.97736 -9.20331 -7.98123 -7.70348 -7.53506 -5.92005 -3.62245 1.55204 2.46656 3.21725 3.22641 3.29053 3.32616 3.39709 3.44198 3.56765 4.25578 4.70170 4.75044 5.02300 5.21253 5.65296 5.77275 5.80728 5.81913 6.04390 6.09143 6.27784 6.38359 6.50390 6.67580 6.77953 6.82959 7.09879 7.20645 7.25106 7.44286 7.64967 7.72059 7.98149 8.22494 8.37391 8.90323 9.36552 9.74346 10.92456 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.008307 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.703142 B = 3369.858114 C = 4194.186407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.125 4.125 3 C -0.049 4.049 4 C -0.170 4.170 5 C 0.531 3.469 6 O -0.539 6.539 7 O -0.517 6.517 8 C -0.066 4.066 9 C -0.081 4.081 10 C 0.319 3.681 11 N -0.556 5.556 12 C -0.282 4.282 13 H 0.089 0.911 14 C 0.014 3.986 15 N -0.881 5.881 16 Si 0.912 3.088 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.234 3.766 21 C 0.198 3.802 22 N -0.467 5.467 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.402 0.598 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.263 0.737 31 H 0.094 0.906 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 0.611 5.023 7.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.069 4.069 4 C -0.172 4.172 5 C 0.379 3.621 6 O -0.431 6.431 7 O -0.328 6.328 8 C -0.086 4.086 9 C -0.101 4.101 10 C 0.224 3.776 11 N -0.272 5.272 12 C -0.408 4.408 13 H 0.106 0.894 14 C -0.186 4.186 15 N -0.521 5.521 16 Si 0.741 3.259 17 H -0.212 1.212 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.104 3.896 21 C -0.122 4.122 22 N -0.147 5.147 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.133 0.867 27 H 0.259 0.741 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.321 0.947 5.218 6.257 hybrid contribution 0.332 0.419 -1.443 1.538 sum 3.653 1.366 3.776 5.428 Atomic orbital electron populations 1.20592 0.91854 1.02576 1.00464 1.19897 0.95919 0.92853 1.04071 1.20418 0.91799 0.97532 0.97106 1.18590 0.92838 0.89605 1.16133 1.21222 0.79690 0.90040 0.71152 1.90817 1.69536 1.34219 1.48529 1.84638 1.21912 1.39848 1.86365 1.20685 0.98878 0.91379 0.97652 1.20874 0.94010 0.96911 0.98324 1.17101 0.89644 0.84922 0.85915 1.41344 1.63152 1.21209 1.01524 1.19268 1.26377 1.13192 0.81942 0.89354 1.24893 0.96845 0.98505 0.98372 1.69816 1.24114 1.31984 1.26225 0.86137 0.78582 0.78399 0.82817 1.21169 1.21434 1.20226 1.18571 0.83404 0.99128 0.88502 1.31477 0.96570 0.92423 0.91725 1.81022 1.13383 1.10010 1.10266 0.93276 0.93390 0.90288 0.86743 0.74104 0.86568 0.86589 0.92517 0.88783 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 8.62 36.00 0.31 -1.67 16 2 C -0.12 -2.60 5.85 -104.79 -0.61 -3.21 16 3 C -0.05 -1.00 9.18 -39.55 -0.36 -1.36 16 4 C -0.17 -3.29 5.88 -104.94 -0.62 -3.91 16 5 C 0.53 9.57 8.26 34.45 0.28 9.86 16 6 O -0.54 -10.87 17.12 -19.29 -0.33 -11.20 16 7 O -0.52 -7.29 12.67 -40.68 -0.52 -7.80 16 8 C -0.07 -1.23 9.56 -39.55 -0.38 -1.61 16 9 C -0.08 -1.58 8.00 -39.75 -0.32 -1.90 16 10 C 0.32 6.59 2.96 -83.89 -0.25 6.34 16 11 N -0.56 -11.18 1.65 -116.23 -0.19 -11.37 16 12 C -0.28 -6.40 9.05 -15.11 -0.14 -6.53 16 13 H 0.09 1.96 7.87 -52.49 -0.41 1.55 16 14 C 0.01 0.35 5.32 -17.45 -0.09 0.25 16 15 N -0.88 -21.89 9.59 55.49 0.53 -21.36 16 16 Si 0.91 19.94 29.57 -169.99 -5.03 14.91 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.23 3.63 6.14 -6.83 -0.04 3.59 16 21 C 0.20 3.47 13.82 -20.75 -0.29 3.18 16 22 N -0.47 -9.06 18.38 42.16 0.77 -8.29 16 23 H 0.05 0.95 7.54 -51.93 -0.39 0.56 16 24 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.08 1.76 6.61 -51.93 -0.34 1.42 16 26 H 0.11 2.26 7.64 -52.49 -0.40 1.86 16 27 H 0.40 3.60 9.11 45.56 0.42 4.01 16 28 H 0.12 1.92 7.60 -52.49 -0.40 1.52 16 29 H 0.12 2.22 8.06 -52.48 -0.42 1.79 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.09 1.20 8.00 -51.93 -0.42 0.78 16 32 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -28.86 289.84 -5.23 -34.10 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.34 Total: 3.61 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.50 Total: 3.03 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 1.12 Total: -41.01 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.85 Total: -19.00 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.86 -5.23 -34.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050545765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.185 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds