Wall clock time and date at job start Mon Mar 30 2020 04:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36625 * 119.96892 * 2 1 4 4 C 1.39874 * 119.94022 * 180.27307 * 3 2 1 5 5 C 1.47385 * 120.06497 * 179.74378 * 4 3 2 6 6 O 1.21525 * 119.99743 * 359.97438 * 5 4 3 7 7 O 1.34769 * 120.00381 * 179.97438 * 5 4 3 8 8 C 1.39914 * 119.87260 * 359.71932 * 4 3 2 9 9 C 1.36582 * 119.93880 * 0.02562 * 8 4 3 10 10 C 1.39350 * 119.97227 * 179.72120 * 2 1 3 11 11 N 1.38745 * 119.93709 * 359.97438 * 10 2 1 12 12 C 1.36774 * 119.99750 * 89.72572 * 11 10 2 13 13 H 1.08000 * 120.00165 * 188.20222 * 12 11 10 14 14 C 1.38890 * 119.99833 * 8.21025 * 12 11 10 15 15 N 1.31509 * 120.00273 * 13.38370 * 14 12 11 16 16 Si 1.86804 * 119.99705 * 193.38874 * 14 12 11 17 17 H 1.48497 * 109.47336 * 89.99623 * 16 14 12 18 18 H 1.48494 * 109.47068 * 209.99662 * 16 14 12 19 19 H 1.48499 * 109.47024 * 329.99652 * 16 14 12 20 20 C 1.46497 * 120.00252 * 269.73018 * 11 10 2 21 21 C 1.47199 * 109.47131 * 95.50153 * 20 11 10 22 22 N 4.13707 * 47.46542 * 140.79203 * 2 1 3 23 23 H 1.09006 * 109.46786 * 270.27944 * 1 2 3 24 24 H 1.08998 * 109.47566 * 30.27672 * 1 2 3 25 25 H 1.09004 * 109.47407 * 150.28461 * 1 2 3 26 26 H 1.08001 * 120.03118 * 359.97438 * 3 2 1 27 27 H 0.96695 * 117.00244 * 179.97438 * 7 5 4 28 28 H 1.07999 * 120.02981 * 179.97438 * 8 4 3 29 29 H 1.08005 * 119.96861 * 179.97438 * 9 8 4 30 30 H 0.96997 * 120.00080 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47125 * 335.50301 * 20 11 10 32 32 H 1.08999 * 109.47428 * 215.50076 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1836 0.0000 4 6 3.5882 1.1829 -0.0058 5 6 4.3271 2.4581 -0.0115 6 8 3.7212 3.5115 -0.0117 7 8 5.6748 2.4560 -0.0165 8 6 4.2844 -0.0307 -0.0056 9 6 3.5971 -1.2109 -0.0003 10 6 2.2031 -1.2071 0.0059 11 7 1.5075 -2.4076 0.0123 12 6 1.1593 -3.0024 -1.1691 13 1 0.5065 -3.8628 -1.1687 14 6 1.6454 -2.5001 -2.3693 15 7 2.6345 -1.6335 -2.3670 16 14 0.8939 -3.0554 -3.9869 17 1 -0.2269 -2.1507 -4.3484 18 1 1.9270 -3.0139 -5.0527 19 1 0.3840 -4.4429 -3.8453 20 6 1.1459 -3.0379 1.2843 21 6 -0.2285 -2.6563 1.6478 22 7 -1.2899 -2.3621 1.9271 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6494 2.1189 -0.0004 27 1 6.1152 3.3168 -0.0206 28 1 5.3644 -0.0342 -0.0105 29 1 4.1341 -2.1480 -0.0006 30 1 2.9737 -1.2824 -3.2051 31 1 1.8330 -2.7060 2.0626 32 1 1.2074 -4.1215 1.1833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050545765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:37 Heat of formation + Delta-G solvation = -26.859712 kcal Electronic energy + Delta-G solvation = -19259.244386 eV Core-core repulsion = 16185.195984 eV Total energy + Delta-G solvation = -3074.048401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26099 -40.16429 -37.73565 -36.94339 -36.44264 -33.62234 -33.27607 -31.23449 -28.60395 -27.78368 -26.23133 -23.82724 -22.48748 -21.57388 -19.48863 -18.76305 -18.53721 -17.85729 -17.09595 -16.47295 -16.25393 -15.94182 -15.61131 -15.02010 -14.84941 -14.33398 -14.26360 -13.96508 -13.76562 -13.53427 -13.21137 -13.07861 -12.84003 -12.68248 -12.63152 -12.42958 -12.22583 -11.98003 -11.92006 -11.81293 -11.46020 -10.92815 -9.53317 -9.28611 -9.16780 -7.67590 -5.37879 0.07170 0.92785 1.48101 1.54462 1.57835 1.79396 1.92310 2.07314 2.30601 2.54083 3.16033 3.28151 3.54563 3.58298 4.17272 4.27572 4.42392 4.51088 4.64460 4.73247 4.82867 4.89627 4.97901 5.16084 5.18137 5.52185 5.61292 5.63282 5.74339 5.77017 6.06939 6.17962 6.32504 6.84902 7.13332 7.17010 7.74077 8.03895 9.11095 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.008307 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.703142 B = 3369.858114 C = 4194.186407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.141 4.141 3 C -0.060 4.060 4 C -0.178 4.178 5 C 0.539 3.461 6 O -0.565 6.565 7 O -0.503 6.503 8 C -0.058 4.058 9 C -0.083 4.083 10 C 0.308 3.692 11 N -0.565 5.565 12 C -0.269 4.269 13 H 0.093 0.907 14 C -0.027 4.027 15 N -0.897 5.897 16 Si 0.951 3.049 17 H -0.302 1.302 18 H -0.298 1.298 19 H -0.267 1.267 20 C 0.230 3.770 21 C 0.215 3.785 22 N -0.505 5.505 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.112 0.888 27 H 0.427 0.573 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.251 0.749 31 H 0.128 0.872 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 0.142 5.774 8.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.144 4.144 3 C -0.080 4.080 4 C -0.180 4.180 5 C 0.387 3.613 6 O -0.459 6.459 7 O -0.316 6.316 8 C -0.078 4.078 9 C -0.104 4.104 10 C 0.213 3.787 11 N -0.281 5.281 12 C -0.397 4.397 13 H 0.110 0.890 14 C -0.225 4.225 15 N -0.540 5.540 16 Si 0.781 3.219 17 H -0.230 1.230 18 H -0.224 1.224 19 H -0.192 1.192 20 C 0.101 3.899 21 C -0.104 4.104 22 N -0.185 5.185 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.130 0.870 27 H 0.288 0.712 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.552 0.466 5.999 7.545 hybrid contribution 0.003 0.585 -1.619 1.721 sum 4.555 1.051 4.380 6.406 Atomic orbital electron populations 1.20435 0.91942 1.01471 1.00365 1.20015 0.96019 0.93403 1.04925 1.20478 0.92579 0.97278 0.97618 1.18793 0.92778 0.90785 1.15640 1.20946 0.80742 0.89030 0.70562 1.90813 1.70448 1.34897 1.49787 1.84561 1.19765 1.41917 1.85386 1.20896 0.99968 0.90649 0.96251 1.20952 0.93666 0.97515 0.98236 1.17245 0.90205 0.84987 0.86252 1.41446 1.63220 1.21144 1.02308 1.19461 1.24941 1.12443 0.82832 0.88961 1.25311 0.97715 0.99447 1.00019 1.69950 1.25246 1.33374 1.25449 0.85508 0.77158 0.78144 0.81065 1.23029 1.22444 1.19190 1.19071 0.82638 1.00591 0.87568 1.31759 0.96612 0.91325 0.90727 1.81041 1.14626 1.11289 1.11503 0.92854 0.93091 0.92610 0.87018 0.71161 0.84275 0.86083 0.93838 0.85422 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 8.62 71.23 0.61 -2.82 16 2 C -0.14 -5.79 5.85 -19.98 -0.12 -5.90 16 3 C -0.06 -2.41 9.18 22.29 0.20 -2.21 16 4 C -0.18 -6.64 5.88 -20.07 -0.12 -6.76 16 5 C 0.54 18.39 8.26 70.23 0.58 18.97 16 6 O -0.57 -22.08 17.12 19.75 0.34 -21.74 16 7 O -0.50 -12.62 12.67 -56.80 -0.72 -13.34 16 8 C -0.06 -2.04 9.56 22.29 0.21 -1.83 16 9 C -0.08 -3.11 8.00 22.16 0.18 -2.93 16 10 C 0.31 12.30 2.96 38.60 0.11 12.41 16 11 N -0.56 -21.70 1.65 -521.66 -0.86 -22.56 16 12 C -0.27 -11.85 9.05 84.08 0.76 -11.09 16 13 H 0.09 3.93 7.87 -2.91 -0.02 3.90 16 14 C -0.03 -1.28 5.32 84.90 0.45 -0.83 16 15 N -0.90 -44.20 9.59 21.66 0.21 -43.99 16 16 Si 0.95 40.81 29.57 68.60 2.03 42.84 16 17 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 C 0.23 6.50 6.14 84.57 0.52 7.02 16 21 C 0.22 7.16 13.82 89.44 1.24 8.39 16 22 N -0.50 -19.10 18.38 20.01 0.37 -18.73 16 23 H 0.05 2.05 7.54 -2.38 -0.02 2.03 16 24 H 0.05 1.95 8.08 -2.39 -0.02 1.94 16 25 H 0.05 2.48 6.61 -2.38 -0.02 2.47 16 26 H 0.11 4.43 7.64 -2.91 -0.02 4.41 16 27 H 0.43 6.18 9.11 -74.06 -0.67 5.51 16 28 H 0.14 4.16 7.60 -2.91 -0.02 4.13 16 29 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.25 12.69 8.31 -92.71 -0.77 11.92 16 31 H 0.13 2.81 8.00 -2.39 -0.02 2.79 16 32 H 0.13 3.03 8.08 -2.39 -0.02 3.01 16 Total: -1.00 -60.71 289.84 6.49 -54.22 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.49 Total: 10.88 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 4.64 Total: 12.42 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -0.28 Total: -85.28 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.38 Total: -35.08 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -60.71 6.49 -54.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050545765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.357 kcal (2) G-P(sol) polarization free energy of solvation -60.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds